Wall clock time and date at job start Tue Mar 31 2020 16:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86795 * 120.00123 * 2 1 4 4 H 1.48504 * 109.46983 * 270.00145 * 3 2 1 5 5 H 1.48498 * 109.47330 * 29.99873 * 3 2 1 6 6 H 1.48492 * 109.47238 * 150.00018 * 3 2 1 7 7 C 1.38960 * 119.99534 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99419 * 179.72630 * 7 2 1 9 9 N 1.37090 * 120.00304 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00132 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99757 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00116 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.46879 * 180.02562 * 12 10 9 14 14 C 1.50653 * 110.99847 * 69.10817 * 13 12 10 15 15 H 1.08998 * 115.87723 * 296.64505 * 14 13 12 16 16 C 1.55853 * 101.02649 * 170.23749 * 14 13 12 17 17 C 1.54834 * 103.51769 * 327.00660 * 16 14 13 18 18 C 1.50647 * 110.99845 * 177.19614 * 13 12 10 19 19 H 1.08999 * 115.87959 * 63.35050 * 18 13 12 20 20 C 1.55850 * 101.02834 * 297.65184 * 18 13 12 21 21 H 1.08999 * 110.61224 * 208.49564 * 20 18 13 22 22 N 1.46499 * 110.61359 * 85.67497 * 20 18 13 23 23 C 1.34775 * 120.00271 * 163.58912 * 22 20 18 24 24 O 1.21626 * 119.99995 * 359.97438 * 23 22 20 25 25 C 1.47260 * 119.99904 * 179.97438 * 23 22 20 26 26 C 1.46693 * 126.94080 * 179.97438 * 25 23 22 27 27 C 1.34490 * 106.33423 * 179.97438 * 26 25 23 28 28 N 1.36451 * 108.85385 * 359.97438 * 27 26 25 29 29 H 0.96993 * 124.84873 * 180.02562 * 28 27 26 30 30 C 1.34662 * 110.30115 * 359.74834 * 28 27 26 31 31 C 1.54830 * 103.51857 * 327.00652 * 20 18 13 32 32 H 0.97001 * 119.99964 * 359.97438 * 1 2 3 33 33 H 0.97006 * 120.00171 * 0.02562 * 9 7 2 34 34 H 1.09002 * 109.46903 * 300.00166 * 12 10 9 35 35 H 1.08998 * 109.47249 * 60.00536 * 12 10 9 36 36 H 1.09001 * 110.61505 * 85.50778 * 16 14 13 37 37 H 1.08998 * 110.61389 * 208.34138 * 16 14 13 38 38 H 1.09001 * 110.60963 * 241.49401 * 17 16 14 39 39 H 1.09001 * 110.61489 * 118.50986 * 17 16 14 40 40 H 0.96999 * 119.99880 * 343.58217 * 22 20 18 41 41 H 1.07997 * 126.83298 * 359.95228 * 26 25 23 42 42 H 1.07992 * 125.57554 * 179.97438 * 27 26 25 43 43 H 1.07993 * 125.80489 * 180.29542 * 30 28 27 44 44 H 1.09001 * 110.61086 * 118.50950 * 31 20 18 45 45 H 1.08999 * 110.61418 * 241.49091 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2035 -0.0005 8 1 3.0889 -1.2035 -0.0050 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5580 -0.0016 11 8 3.2102 -3.5580 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1983 -5.9796 -0.0027 14 6 2.9303 -6.0646 1.3113 15 1 3.5598 -5.2106 1.5613 16 6 3.6592 -7.4337 1.1585 17 6 2.6739 -8.2756 0.3113 18 6 1.4814 -7.3028 0.0655 19 1 0.8359 -7.5383 -0.7806 20 6 0.7661 -7.1835 1.4450 21 1 0.6227 -8.1685 1.8893 22 7 -0.5176 -6.4922 1.3023 23 6 -1.4380 -6.5703 2.2838 24 8 -1.2030 -7.2153 3.2878 25 6 -2.7281 -5.8749 2.1405 26 6 -3.8321 -5.8572 3.1062 27 6 -4.8008 -5.1013 2.5595 28 7 -4.3780 -4.6565 1.3407 29 1 -4.8962 -4.0914 0.7466 30 6 -3.1362 -5.1092 1.0832 31 6 1.7514 -6.3416 2.2921 32 1 -0.4850 0.8401 0.0004 33 1 0.3533 -2.3907 -0.0005 34 1 0.6174 -4.9213 0.8880 35 1 0.6168 -4.9202 -0.8920 36 1 4.6061 -7.3078 0.6333 37 1 3.8206 -7.8934 2.1335 38 1 2.3444 -9.1540 0.8663 39 1 3.1324 -8.5671 -0.6336 40 1 -0.7051 -5.9780 0.5014 41 1 -3.8613 -6.3528 4.0653 42 1 -5.7569 -4.8821 3.0111 43 1 -2.5613 -4.9047 0.1922 44 1 1.2859 -5.4073 2.6062 45 1 2.0964 -6.9091 3.1563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110585103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:24 Heat of formation + Delta-G solvation = -10.397845 kcal Electronic energy + Delta-G solvation = -29417.561225 eV Core-core repulsion = 25435.686747 eV Total energy + Delta-G solvation = -3981.874478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51879 -41.83559 -39.89426 -39.46236 -35.95909 -35.33538 -33.43151 -32.92150 -32.02719 -30.78380 -30.44467 -29.14435 -28.03656 -25.94278 -24.46037 -22.56732 -21.77381 -21.55224 -21.46056 -20.47817 -20.29360 -19.70184 -19.46248 -17.85467 -17.50417 -17.26609 -16.95748 -16.45392 -16.21759 -15.79452 -15.69227 -15.49507 -15.06632 -14.75034 -14.65332 -14.47726 -14.35452 -13.78215 -13.64628 -13.54579 -13.24815 -13.08994 -13.02615 -12.99206 -12.83308 -12.54889 -12.41017 -12.29702 -12.14098 -12.06529 -11.69795 -11.46719 -11.33498 -10.88004 -10.29974 -10.16258 -9.98546 -9.72217 -9.45399 -9.28462 -8.46440 -5.93396 0.77723 1.36688 1.40708 1.52447 1.56624 2.07112 2.16913 2.28113 2.49437 2.58238 2.72858 3.20339 3.27673 3.62411 3.69940 3.78295 4.03243 4.09864 4.11466 4.18492 4.22939 4.31929 4.39746 4.43967 4.47846 4.52084 4.55005 4.59485 4.73465 4.78190 4.95573 5.01526 5.08195 5.11459 5.22503 5.27722 5.34076 5.41632 5.50489 5.72664 5.75892 5.86788 5.96971 6.08553 6.54885 6.62176 6.69844 7.14591 7.30776 7.57861 8.14743 8.70824 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008111 B = 0.004864 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.277038 B = 5754.888503 C = 8644.321176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.010 4.010 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.277 1.277 7 C -0.331 4.331 8 H 0.075 0.925 9 N -0.572 5.572 10 C 0.442 3.558 11 O -0.617 6.617 12 C 0.018 3.982 13 N -0.482 5.482 14 C 0.048 3.952 15 H 0.084 0.916 16 C -0.111 4.111 17 C -0.100 4.100 18 C 0.046 3.954 19 H 0.145 0.855 20 C 0.122 3.878 21 H 0.097 0.903 22 N -0.715 5.715 23 C 0.585 3.415 24 O -0.591 6.591 25 C -0.273 4.273 26 C -0.182 4.182 27 C -0.003 4.003 28 N -0.535 5.535 29 H 0.436 0.564 30 C 0.064 3.936 31 C -0.157 4.157 32 H 0.277 0.723 33 H 0.396 0.604 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.408 0.592 41 H 0.135 0.865 42 H 0.205 0.795 43 H 0.196 0.804 44 H 0.040 0.960 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.780 -13.964 -0.690 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.812 3.188 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.460 4.460 8 H 0.093 0.907 9 N -0.210 5.210 10 C 0.230 3.770 11 O -0.503 6.503 12 C -0.114 4.114 13 N -0.204 5.204 14 C -0.061 4.061 15 H 0.102 0.898 16 C -0.149 4.149 17 C -0.138 4.138 18 C -0.063 4.063 19 H 0.163 0.837 20 C 0.016 3.984 21 H 0.115 0.885 22 N -0.368 5.368 23 C 0.377 3.623 24 O -0.473 6.473 25 C -0.283 4.283 26 C -0.207 4.207 27 C -0.132 4.132 28 N -0.130 5.130 29 H 0.277 0.723 30 C -0.075 4.075 31 C -0.197 4.197 32 H 0.086 0.914 33 H 0.229 0.771 34 H 0.100 0.900 35 H 0.133 0.867 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.247 0.753 41 H 0.153 0.847 42 H 0.222 0.778 43 H 0.213 0.787 44 H 0.059 0.941 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.689 -14.064 -0.606 17.090 hybrid contribution -0.721 1.704 0.511 1.920 sum -10.410 -12.360 -0.094 16.160 Atomic orbital electron populations 1.69647 1.06552 1.29080 1.50496 1.25925 0.96557 1.02027 0.96447 0.85008 0.77876 0.77309 0.78653 1.19528 1.19608 1.20195 1.19598 0.92555 0.84103 1.49779 0.90714 1.41854 1.09154 1.04520 1.65429 1.20749 0.88300 0.85934 0.82036 1.90484 1.15838 1.87869 1.56131 1.22404 0.95480 0.89583 1.03898 1.67531 1.19872 1.00506 1.32531 1.24379 0.95415 0.98624 0.87666 0.89765 1.22594 0.98586 0.92877 1.00804 1.22528 0.93658 0.96528 1.01124 1.25011 0.95463 0.90694 0.95129 0.83728 1.22765 0.81991 0.96007 0.97623 0.88531 1.46196 1.15794 1.53292 1.21497 1.17847 0.83316 0.79001 0.82181 1.90703 1.80668 1.44647 1.31235 1.20515 0.96643 1.11129 1.00050 1.22076 0.93495 1.04833 1.00246 1.22261 1.01644 1.01933 0.87336 1.41681 1.13758 1.40442 1.17160 0.72333 1.22298 0.87637 0.97468 1.00066 1.23682 0.97127 0.99328 0.99606 0.91408 0.77072 0.90020 0.86717 0.91550 0.89924 0.88856 0.89419 0.75345 0.84673 0.77832 0.78697 0.94073 0.90035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.97 13.05 21.67 0.28 -47.69 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.33 -18.65 9.68 84.04 0.81 -17.83 16 8 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 9 N -0.57 -28.78 5.29 -306.97 -1.62 -30.40 16 10 C 0.44 20.91 7.58 87.66 0.66 21.58 16 11 O -0.62 -34.25 14.37 -3.08 -0.04 -34.29 16 12 C 0.02 0.61 4.05 85.56 0.35 0.96 16 13 N -0.48 -15.08 5.31 -808.84 -4.30 -19.38 16 14 C 0.05 1.56 4.26 46.14 0.20 1.76 16 15 H 0.08 3.49 6.87 -2.39 -0.02 3.47 16 16 C -0.11 -2.69 6.43 32.21 0.21 -2.48 16 17 C -0.10 -1.91 6.43 32.21 0.21 -1.70 16 18 C 0.05 1.00 4.62 46.15 0.21 1.21 16 19 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 20 C 0.12 3.07 2.46 46.60 0.11 3.18 16 21 H 0.10 2.44 7.49 -2.39 -0.02 2.42 16 22 N -0.71 -17.82 3.75 -438.35 -1.64 -19.47 16 23 C 0.59 17.94 7.77 86.62 0.67 18.61 16 24 O -0.59 -22.64 16.76 -4.11 -0.07 -22.71 16 25 C -0.27 -7.18 6.29 -19.04 -0.12 -7.30 16 26 C -0.18 -4.47 10.97 23.62 0.26 -4.21 16 27 C 0.00 -0.06 11.89 83.12 0.99 0.93 16 28 N -0.54 -7.68 5.90 -194.55 -1.15 -8.83 16 29 H 0.44 3.22 8.96 -92.71 -0.83 2.39 16 30 C 0.06 1.20 11.40 83.92 0.96 2.16 16 31 C -0.16 -4.81 5.46 32.20 0.18 -4.64 16 32 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 33 H 0.40 18.55 7.90 -92.70 -0.73 17.82 16 34 H 0.08 2.62 3.56 -2.39 -0.01 2.61 16 35 H 0.11 3.11 8.03 -2.39 -0.02 3.09 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.73 7.82 -2.39 -0.02 1.71 16 38 H 0.09 1.40 7.82 -2.39 -0.02 1.38 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.41 8.39 5.44 -92.71 -0.50 7.89 16 41 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.20 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.20 2.54 7.45 -2.91 -0.02 2.52 16 44 H 0.04 1.50 7.07 -2.39 -0.02 1.48 16 45 H 0.08 2.36 7.82 -2.39 -0.02 2.34 16 Total: -1.00 -79.83 362.34 -1.35 -81.18 By element: Atomic # 1 Polarization: 45.62 SS G_CDS: -1.00 Total: 44.62 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 6.16 Total: 12.18 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -8.43 Total: -125.77 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -0.11 Total: -57.00 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -79.83 -1.35 -81.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110585103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.781 kcal (2) G-P(sol) polarization free energy of solvation -79.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds