Wall clock time and date at job start Tue Mar 31 2020 16:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38596 * 119.54580 * 2 1 4 4 C 1.38586 * 119.35127 * 180.02562 * 3 2 1 5 5 C 1.38634 * 118.48520 * 359.97438 * 4 3 2 6 6 C 1.39263 * 119.06353 * 0.02562 * 5 4 3 7 7 C 1.48164 * 119.72499 * 180.02562 * 6 5 4 8 8 O 1.21518 * 120.00280 * 8.82196 * 7 6 5 9 9 N 1.34783 * 120.00097 * 188.83024 * 7 6 5 10 10 C 1.47079 * 120.87981 * 7.54164 * 9 7 6 11 11 C 1.53238 * 108.51778 * 128.84005 * 10 9 7 12 12 N 1.46899 * 109.34082 * 53.83426 * 11 10 9 13 13 C 1.46896 * 111.00234 * 172.74708 * 12 11 10 14 14 C 1.50702 * 109.47258 * 64.64394 * 13 12 11 15 15 O 1.21285 * 120.00111 * 354.38769 * 14 13 12 16 16 N 1.34781 * 119.99817 * 174.38944 * 14 13 12 17 17 C 1.37103 * 119.99866 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99501 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99897 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99902 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00082 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47194 * 89.99802 * 21 19 17 23 23 H 1.48500 * 109.46947 * 209.99781 * 21 19 17 24 24 H 1.48507 * 109.47145 * 329.99653 * 21 19 17 25 25 C 1.46905 * 111.26664 * 296.89154 * 12 11 10 26 26 C 1.47084 * 120.88127 * 187.56914 * 9 7 6 27 27 N 1.31494 * 119.54736 * 180.29473 * 2 1 3 28 28 H 1.08997 * 109.47010 * 90.00138 * 1 2 3 29 29 H 1.08997 * 109.46725 * 209.99802 * 1 2 3 30 30 H 1.08996 * 109.47326 * 330.00120 * 1 2 3 31 31 H 1.08000 * 120.33159 * 0.04169 * 3 2 1 32 32 H 1.07994 * 120.76243 * 179.97438 * 4 3 2 33 33 H 1.08006 * 120.46937 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.62971 * 9.13272 * 10 9 7 35 35 H 1.08998 * 109.62736 * 248.54958 * 10 9 7 36 36 H 1.09006 * 109.49195 * 173.78577 * 11 10 9 37 37 H 1.08998 * 109.49427 * 293.86999 * 11 10 9 38 38 H 1.08997 * 109.47626 * 184.64458 * 13 12 11 39 39 H 1.09000 * 109.46843 * 304.64366 * 13 12 11 40 40 H 0.96995 * 119.99965 * 359.97438 * 16 14 13 41 41 H 0.96998 * 120.00107 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.49456 * 183.06428 * 25 12 11 43 43 H 1.09004 * 109.49216 * 303.14532 * 25 12 11 44 44 H 1.09002 * 109.62769 * 111.44770 * 26 9 7 45 45 H 1.08996 * 109.62574 * 350.87360 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5764 1.2010 -0.0005 5 6 4.2334 -0.0197 -0.0005 6 6 3.4822 -1.1924 -0.0005 7 6 4.1693 -2.5050 0.0001 8 8 5.3723 -2.5611 0.1620 9 7 3.4600 -3.6371 -0.1791 10 6 2.0350 -3.5859 -0.5397 11 6 1.8104 -4.4801 -1.7638 12 7 2.3331 -5.8247 -1.4865 13 6 1.9848 -6.7578 -2.5662 14 6 2.6686 -6.3307 -3.8395 15 8 3.2931 -5.2916 -3.8732 16 7 2.5860 -7.1035 -4.9406 17 6 3.2076 -6.7146 -6.0991 18 1 3.7638 -5.7893 -6.1291 19 6 3.1230 -7.5116 -7.2342 20 7 3.7192 -7.1391 -8.3445 21 14 2.1617 -9.1123 -7.1820 22 1 0.7492 -8.8541 -7.5609 23 1 2.7608 -10.0808 -8.1351 24 1 2.2109 -9.6747 -5.8084 25 6 3.7847 -5.7964 -1.2630 26 6 4.0903 -4.9563 -0.0185 27 7 2.1555 -1.1439 -0.0059 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6485 2.1399 0.0007 32 1 4.1319 2.1271 -0.0010 33 1 5.3127 -0.0608 -0.0013 34 1 1.7545 -2.5602 -0.7792 35 1 1.4332 -3.9481 0.2937 36 1 0.7434 -4.5418 -1.9783 37 1 2.3308 -4.0576 -2.6233 38 1 2.3116 -7.7624 -2.2978 39 1 0.9050 -6.7546 -2.7150 40 1 2.0869 -7.9347 -4.9135 41 1 3.6599 -7.6952 -9.1370 42 1 4.1497 -6.8127 -1.1144 43 1 4.2777 -5.3556 -2.1295 44 1 3.6860 -5.4501 0.8651 45 1 5.1685 -4.8364 0.0868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112619989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:23 Heat of formation + Delta-G solvation = 5.988449 kcal Electronic energy + Delta-G solvation = -28776.973924 eV Core-core repulsion = 24795.810009 eV Total energy + Delta-G solvation = -3981.163915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03922 -39.66167 -38.74667 -37.03105 -34.59167 -33.74756 -33.27708 -32.78679 -31.75250 -30.74863 -28.91287 -28.00428 -25.99662 -24.69105 -23.59336 -23.38083 -22.35974 -21.11179 -19.59925 -19.31982 -18.31676 -17.42912 -16.85429 -16.23572 -16.02850 -15.82569 -15.56047 -15.00416 -14.97661 -14.60977 -14.45669 -14.34312 -14.07229 -13.98435 -13.59504 -13.39728 -13.25986 -12.94838 -12.64002 -12.53572 -12.33323 -12.25447 -11.97797 -11.68951 -11.50020 -11.31576 -11.12663 -10.81364 -10.69480 -10.61425 -10.27914 -10.15757 -10.04925 -9.55164 -9.34516 -9.25181 -9.07441 -8.52743 -8.22440 -7.50326 -6.36895 -3.88211 0.44721 0.90951 2.66758 2.97996 2.99247 3.03402 3.11993 3.62053 3.63841 3.78242 4.05475 4.29300 4.36590 4.47406 4.64595 4.69241 4.79556 4.99994 5.15240 5.23019 5.25851 5.29205 5.31719 5.35358 5.46129 5.59483 5.69972 5.72699 5.76291 5.80140 5.84212 5.88387 5.90397 5.91401 6.04057 6.14580 6.42379 6.53396 6.66311 6.74304 7.16726 7.34575 7.42635 7.51115 7.57321 8.09565 8.17028 8.52342 8.88978 9.36545 9.75309 10.76002 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.002812 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.007383 B = 9954.160282 C =10226.483376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.121 3.879 3 C -0.153 4.153 4 C -0.076 4.076 5 C -0.118 4.118 6 C 0.092 3.908 7 C 0.569 3.431 8 O -0.540 6.540 9 N -0.584 5.584 10 C 0.088 3.912 11 C 0.021 3.979 12 N -0.513 5.513 13 C 0.039 3.961 14 C 0.414 3.586 15 O -0.575 6.575 16 N -0.584 5.584 17 C -0.308 4.308 18 H 0.118 0.882 19 C 0.042 3.958 20 N -0.879 5.879 21 Si 0.881 3.119 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.268 1.268 25 C 0.024 3.976 26 C 0.119 3.881 27 N -0.449 5.449 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.371 0.629 41 H 0.274 0.726 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.945 11.648 18.982 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.018 4.018 3 C -0.173 4.173 4 C -0.102 4.102 5 C -0.139 4.139 6 C -0.045 4.045 7 C 0.355 3.645 8 O -0.418 6.418 9 N -0.315 5.315 10 C -0.035 4.035 11 C -0.108 4.108 12 N -0.236 5.236 13 C -0.093 4.093 14 C 0.200 3.800 15 O -0.460 6.460 16 N -0.222 5.222 17 C -0.437 4.437 18 H 0.136 0.864 19 C -0.161 4.161 20 N -0.518 5.518 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.105 4.105 26 C -0.004 4.004 27 N -0.162 5.162 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.204 0.796 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.496 11.289 19.249 23.541 hybrid contribution 0.076 -0.462 -1.092 1.188 sum -7.420 10.827 18.157 22.404 Atomic orbital electron populations 1.20766 0.88144 1.03793 1.03614 1.21524 0.97420 0.88239 0.94653 1.22165 0.95015 0.99395 1.00695 1.21635 0.94455 0.98293 0.95794 1.22103 1.02376 0.91697 0.97728 1.21197 0.89584 0.94313 0.99439 1.17871 0.86045 0.83128 0.77424 1.90762 1.13359 1.86446 1.51213 1.47941 1.11937 1.05223 1.66359 1.23028 0.79464 1.04317 0.96676 1.22790 1.00227 0.89127 0.98617 1.62503 1.13134 1.08761 1.39225 1.22112 1.00868 0.97426 0.88943 1.21074 0.86649 0.86592 0.85689 1.90472 1.46151 1.25195 1.84134 1.42405 1.47554 1.21108 1.11116 1.19450 1.29388 1.08877 0.85944 0.86422 1.25080 0.97508 0.98355 0.95188 1.69628 1.42361 1.38445 1.01385 0.86653 0.80690 0.83491 0.78471 1.19557 1.20125 1.19374 1.22678 0.89206 1.00060 0.98518 1.21773 0.99085 0.81578 0.97950 1.67513 1.08480 1.28180 1.12027 0.89921 0.90060 0.90518 0.84309 0.83993 0.83391 0.84125 0.91707 0.90712 0.90451 0.89250 0.89058 0.79598 0.91537 0.90492 0.90170 0.91146 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.17 36.01 0.37 -0.30 16 2 C 0.12 1.13 6.78 -82.60 -0.56 0.57 16 3 C -0.15 -1.18 9.75 -39.32 -0.38 -1.56 16 4 C -0.08 -0.63 10.17 -39.31 -0.40 -1.03 16 5 C -0.12 -1.35 9.63 -39.05 -0.38 -1.73 16 6 C 0.09 1.27 6.59 -83.01 -0.55 0.72 16 7 C 0.57 9.35 7.67 -12.18 -0.09 9.26 16 8 O -0.54 -10.10 15.82 5.35 0.08 -10.02 16 9 N -0.58 -9.20 3.01 -173.45 -0.52 -9.72 16 10 C 0.09 1.24 6.00 -3.60 -0.02 1.22 16 11 C 0.02 0.34 5.20 -3.70 -0.02 0.32 16 12 N -0.51 -8.26 4.83 -235.76 -1.14 -9.40 16 13 C 0.04 0.63 5.84 -4.98 -0.03 0.61 16 14 C 0.41 9.13 7.18 -10.98 -0.08 9.06 16 15 O -0.57 -14.79 11.25 5.55 0.06 -14.73 16 16 N -0.58 -13.71 5.09 -10.96 -0.06 -13.77 16 17 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 18 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 20 N -0.88 -25.65 13.96 55.50 0.77 -24.88 16 21 Si 0.88 19.25 27.74 -169.99 -4.71 14.53 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 25 C 0.02 0.40 5.12 -3.70 -0.02 0.38 16 26 C 0.12 1.79 6.62 -3.60 -0.02 1.77 16 27 N -0.45 -5.46 6.04 -6.06 -0.04 -5.49 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.15 1.65 7.67 -52.48 -0.40 1.25 16 34 H 0.14 1.95 4.16 -79.51 -0.33 1.62 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.08 8.06 -51.93 -0.42 0.66 16 37 H 0.08 1.58 5.74 -51.93 -0.30 1.28 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 40 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.08 1.17 8.11 -51.93 -0.42 0.75 16 43 H 0.08 1.70 5.73 -51.93 -0.30 1.40 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.43 7.04 -51.93 -0.37 1.07 16 LS Contribution 361.77 15.07 5.45 5.45 Total: -1.00 -34.63 361.77 -8.65 -43.28 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -6.12 Total: 13.21 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -2.43 Total: 11.53 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.98 Total: -63.26 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.15 Total: -24.75 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.63 -8.65 -43.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112619989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.268 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds