Wall clock time and date at job start Tue Mar 31 2020 16:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38596 * 119.54580 * 2 1 4 4 C 1.38586 * 119.35127 * 180.02562 * 3 2 1 5 5 C 1.38634 * 118.48520 * 359.97438 * 4 3 2 6 6 C 1.39263 * 119.06353 * 0.02562 * 5 4 3 7 7 C 1.48164 * 119.72499 * 180.02562 * 6 5 4 8 8 O 1.21518 * 120.00280 * 8.82196 * 7 6 5 9 9 N 1.34783 * 120.00097 * 188.83024 * 7 6 5 10 10 C 1.47079 * 120.87981 * 7.54164 * 9 7 6 11 11 C 1.53238 * 108.51778 * 128.84005 * 10 9 7 12 12 N 1.46899 * 109.34082 * 53.83426 * 11 10 9 13 13 C 1.46896 * 111.00234 * 172.74708 * 12 11 10 14 14 C 1.50702 * 109.47258 * 64.64394 * 13 12 11 15 15 O 1.21285 * 120.00111 * 354.38769 * 14 13 12 16 16 N 1.34781 * 119.99817 * 174.38944 * 14 13 12 17 17 C 1.37103 * 119.99866 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99501 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99897 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99902 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 120.00082 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47194 * 89.99802 * 21 19 17 23 23 H 1.48500 * 109.46947 * 209.99781 * 21 19 17 24 24 H 1.48507 * 109.47145 * 329.99653 * 21 19 17 25 25 C 1.46905 * 111.26664 * 296.89154 * 12 11 10 26 26 C 1.47084 * 120.88127 * 187.56914 * 9 7 6 27 27 N 1.31494 * 119.54736 * 180.29473 * 2 1 3 28 28 H 1.08997 * 109.47010 * 90.00138 * 1 2 3 29 29 H 1.08997 * 109.46725 * 209.99802 * 1 2 3 30 30 H 1.08996 * 109.47326 * 330.00120 * 1 2 3 31 31 H 1.08000 * 120.33159 * 0.04169 * 3 2 1 32 32 H 1.07994 * 120.76243 * 179.97438 * 4 3 2 33 33 H 1.08006 * 120.46937 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.62971 * 9.13272 * 10 9 7 35 35 H 1.08998 * 109.62736 * 248.54958 * 10 9 7 36 36 H 1.09006 * 109.49195 * 173.78577 * 11 10 9 37 37 H 1.08998 * 109.49427 * 293.86999 * 11 10 9 38 38 H 1.08997 * 109.47626 * 184.64458 * 13 12 11 39 39 H 1.09000 * 109.46843 * 304.64366 * 13 12 11 40 40 H 0.96995 * 119.99965 * 359.97438 * 16 14 13 41 41 H 0.96998 * 120.00107 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.49456 * 183.06428 * 25 12 11 43 43 H 1.09004 * 109.49216 * 303.14532 * 25 12 11 44 44 H 1.09002 * 109.62769 * 111.44770 * 26 9 7 45 45 H 1.08996 * 109.62574 * 350.87360 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.2057 0.0000 4 6 3.5764 1.2010 -0.0005 5 6 4.2334 -0.0197 -0.0005 6 6 3.4822 -1.1924 -0.0005 7 6 4.1693 -2.5050 0.0001 8 8 5.3723 -2.5611 0.1620 9 7 3.4600 -3.6371 -0.1791 10 6 2.0350 -3.5859 -0.5397 11 6 1.8104 -4.4801 -1.7638 12 7 2.3331 -5.8247 -1.4865 13 6 1.9848 -6.7578 -2.5662 14 6 2.6686 -6.3307 -3.8395 15 8 3.2931 -5.2916 -3.8732 16 7 2.5860 -7.1035 -4.9406 17 6 3.2076 -6.7146 -6.0991 18 1 3.7638 -5.7893 -6.1291 19 6 3.1230 -7.5116 -7.2342 20 7 3.7192 -7.1391 -8.3445 21 14 2.1617 -9.1123 -7.1820 22 1 0.7492 -8.8541 -7.5609 23 1 2.7608 -10.0808 -8.1351 24 1 2.2109 -9.6747 -5.8084 25 6 3.7847 -5.7964 -1.2630 26 6 4.0903 -4.9563 -0.0185 27 7 2.1555 -1.1439 -0.0059 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6485 2.1399 0.0007 32 1 4.1319 2.1271 -0.0010 33 1 5.3127 -0.0608 -0.0013 34 1 1.7545 -2.5602 -0.7792 35 1 1.4332 -3.9481 0.2937 36 1 0.7434 -4.5418 -1.9783 37 1 2.3308 -4.0576 -2.6233 38 1 2.3116 -7.7624 -2.2978 39 1 0.9050 -6.7546 -2.7150 40 1 2.0869 -7.9347 -4.9135 41 1 3.6599 -7.6952 -9.1370 42 1 4.1497 -6.8127 -1.1144 43 1 4.2777 -5.3556 -2.1295 44 1 3.6860 -5.4501 0.8651 45 1 5.1685 -4.8364 0.0868 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112619989.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:23 Heat of formation + Delta-G solvation = -21.238227 kcal Electronic energy + Delta-G solvation = -28778.154562 eV Core-core repulsion = 24795.810009 eV Total energy + Delta-G solvation = -3982.344552 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.02464 -41.02538 -40.11058 -38.51200 -36.23147 -35.38350 -34.00903 -33.83192 -33.65111 -31.96839 -30.30620 -28.69597 -27.53566 -25.99871 -24.96642 -24.59856 -23.17432 -22.32695 -21.37236 -20.74761 -20.04868 -18.62736 -17.85375 -17.71759 -17.09980 -16.97326 -16.72151 -16.66768 -16.28291 -15.92660 -15.76586 -15.56733 -15.31690 -15.25051 -14.94669 -14.67732 -14.46413 -14.29628 -14.15880 -13.36268 -13.29857 -13.15808 -13.06938 -13.00928 -12.90123 -12.72673 -12.46362 -12.26795 -12.11259 -12.08404 -12.01455 -11.47096 -11.42655 -11.08942 -10.93633 -10.25959 -10.09008 -10.01472 -9.76457 -9.06667 -8.45771 -6.06767 -0.41355 0.17997 1.28263 1.33112 1.42765 1.59788 1.85438 1.89046 2.20114 2.72373 2.82492 2.94023 3.04721 3.11383 3.52405 3.82116 3.96128 3.98941 4.03568 4.08266 4.15752 4.18002 4.33733 4.37365 4.53968 4.55975 4.58007 4.62850 4.66994 4.75472 4.79055 4.87519 5.05709 5.08336 5.11361 5.12870 5.24080 5.29991 5.46682 5.49118 5.74111 5.80824 5.93315 5.97615 6.28366 6.53968 6.65183 6.84306 6.98453 7.34903 7.92344 8.72136 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.002812 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.007383 B = 9954.160282 C =10226.483376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.110 3.890 3 C -0.137 4.137 4 C -0.071 4.071 5 C -0.132 4.132 6 C 0.058 3.942 7 C 0.558 3.442 8 O -0.579 6.579 9 N -0.591 5.591 10 C 0.095 3.905 11 C 0.023 3.977 12 N -0.496 5.496 13 C 0.046 3.954 14 C 0.415 3.585 15 O -0.616 6.616 16 N -0.587 5.587 17 C -0.330 4.330 18 H 0.049 0.951 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.255 1.255 23 H -0.276 1.276 24 H -0.229 1.229 25 C 0.029 3.971 26 C 0.121 3.879 27 N -0.465 5.465 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.027 0.973 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.096 0.904 43 H 0.027 0.973 44 H 0.099 0.901 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 11.051 21.288 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.030 4.030 3 C -0.156 4.156 4 C -0.096 4.096 5 C -0.154 4.154 6 C -0.078 4.078 7 C 0.346 3.654 8 O -0.460 6.460 9 N -0.321 5.321 10 C -0.027 4.027 11 C -0.105 4.105 12 N -0.218 5.218 13 C -0.085 4.085 14 C 0.203 3.797 15 O -0.502 6.502 16 N -0.228 5.228 17 C -0.459 4.459 18 H 0.067 0.933 19 C -0.215 4.215 20 N -0.576 5.576 21 Si 0.787 3.213 22 H -0.179 1.179 23 H -0.201 1.201 24 H -0.152 1.152 25 C -0.100 4.100 26 C -0.001 4.001 27 N -0.178 5.178 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.199 0.801 32 H 0.195 0.805 33 H 0.157 0.843 34 H 0.164 0.836 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.046 0.954 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.117 0.883 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.284 10.692 21.591 26.605 hybrid contribution 1.273 -0.029 -1.775 2.185 sum -10.011 10.663 19.815 24.629 Atomic orbital electron populations 1.20876 0.85727 1.05149 1.04290 1.22198 0.99012 0.88095 0.93724 1.22669 0.94791 1.00457 0.97718 1.22047 0.95179 0.98128 0.94286 1.22211 1.02159 0.92578 0.98403 1.20902 0.90661 0.93360 1.02897 1.18458 0.85894 0.84434 0.76614 1.90712 1.14943 1.87217 1.53113 1.48132 1.12618 1.05303 1.66065 1.23096 0.78797 1.04437 0.96346 1.22777 1.00833 0.89214 0.97703 1.62612 1.12248 1.08702 1.38251 1.22354 1.02256 0.98739 0.85171 1.22415 0.85037 0.85311 0.86977 1.90508 1.47471 1.27166 1.85099 1.42228 1.48195 1.22312 1.10050 1.18977 1.30649 1.07478 0.88809 0.93296 1.26188 0.98353 1.03172 0.93761 1.69817 1.44410 1.40776 1.02584 0.85328 0.78782 0.76640 0.80533 1.17915 1.20138 1.15226 1.22587 0.89354 1.00925 0.97130 1.21761 0.98672 0.81605 0.98112 1.67322 1.07604 1.30011 1.12887 0.89413 0.90332 0.87605 0.80125 0.80543 0.84340 0.83632 0.89634 0.88323 0.95427 0.85857 0.85440 0.77378 0.91114 0.88558 0.95429 0.88341 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.17 71.24 0.72 -0.25 16 2 C 0.11 1.82 6.78 42.70 0.29 2.11 16 3 C -0.14 -1.67 9.75 22.44 0.22 -1.45 16 4 C -0.07 -1.05 10.17 22.45 0.23 -0.82 16 5 C -0.13 -3.12 9.63 22.61 0.22 -2.90 16 6 C 0.06 1.64 6.59 41.89 0.28 1.92 16 7 C 0.56 19.58 7.67 86.88 0.67 20.25 16 8 O -0.58 -23.52 15.82 -3.77 -0.06 -23.58 16 9 N -0.59 -19.26 3.01 -820.97 -2.47 -21.73 16 10 C 0.10 2.66 6.00 86.35 0.52 3.18 16 11 C 0.02 0.75 5.20 86.38 0.45 1.20 16 12 N -0.50 -15.18 4.83 -899.82 -4.35 -19.52 16 13 C 0.05 1.40 5.84 85.56 0.50 1.90 16 14 C 0.41 18.48 7.18 87.66 0.63 19.11 16 15 O -0.62 -33.78 11.25 -3.04 -0.03 -33.81 16 16 N -0.59 -27.56 5.09 -306.98 -1.56 -29.13 16 17 C -0.33 -19.51 10.16 84.04 0.85 -18.65 16 18 H 0.05 3.49 7.39 -2.91 -0.02 3.47 16 19 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 20 N -0.94 -57.11 13.96 21.66 0.30 -56.81 16 21 Si 0.97 38.82 27.74 68.60 1.90 40.73 16 22 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 25 C 0.03 0.98 5.12 86.38 0.44 1.42 16 26 C 0.12 3.73 6.62 86.35 0.57 4.30 16 27 N -0.46 -11.11 6.04 -173.08 -1.05 -12.16 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 0.39 8.08 -2.39 -0.02 0.37 16 31 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 32 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.14 3.38 7.67 -2.91 -0.02 3.36 16 34 H 0.15 4.03 4.16 -56.85 -0.24 3.80 16 35 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.10 2.64 8.06 -2.38 -0.02 2.63 16 37 H 0.03 1.18 5.74 -2.39 -0.01 1.17 16 38 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.13 3.05 8.07 -2.39 -0.02 3.03 16 40 H 0.39 15.07 5.76 -92.71 -0.53 14.53 16 41 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.10 2.84 8.11 -2.39 -0.02 2.82 16 43 H 0.03 1.25 5.73 -2.38 -0.01 1.23 16 44 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.08 2.60 7.04 -2.39 -0.02 2.59 16 Total: -1.00 -86.67 361.77 -0.05 -86.72 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: 0.21 Total: 38.43 kcal Atomic # 6 Polarization: 23.82 SS G_CDS: 7.05 Total: 30.88 kcal Atomic # 7 Polarization: -130.23 SS G_CDS: -9.12 Total: -139.35 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -0.09 Total: -57.40 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.90 Total: 40.73 kcal Total: -86.67 -0.05 -86.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112619989.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.479 kcal (2) G-P(sol) polarization free energy of solvation -86.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds