Wall clock time and date at job start Tue Mar 31 2020 17:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38630 * 120.47023 * 2 1 4 4 C 1.38580 * 118.48877 * 180.25612 * 3 2 1 5 5 C 1.38606 * 119.34830 * 359.42964 * 4 3 2 6 6 N 1.31491 * 120.90227 * 0.57984 * 5 4 3 7 7 C 1.32743 * 121.64540 * 359.72158 * 6 5 4 8 8 C 1.48165 * 119.72830 * 179.97438 * 7 6 5 9 9 O 1.21520 * 120.00154 * 255.64931 * 8 7 6 10 10 N 1.34775 * 120.00108 * 75.64548 * 8 7 6 11 11 C 1.47079 * 120.87846 * 4.79458 * 10 8 7 12 12 C 1.53694 * 108.27694 * 128.75427 * 11 10 8 13 13 N 1.46896 * 109.25696 * 54.08122 * 12 11 10 14 14 C 1.46910 * 110.99861 * 172.60774 * 13 12 11 15 15 C 1.50699 * 109.46983 * 294.29897 * 14 13 12 16 16 O 1.21285 * 119.99943 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99649 * 180.02562 * 15 14 13 18 18 C 1.37104 * 120.00171 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99350 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00416 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99856 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99993 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47353 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47062 * 120.00490 * 22 20 18 25 25 H 1.48499 * 109.47292 * 239.99852 * 22 20 18 26 26 C 1.46895 * 111.26874 * 296.75248 * 13 12 11 27 27 C 1.47077 * 120.88188 * 185.06800 * 10 8 7 28 28 H 1.09000 * 109.47027 * 85.22741 * 1 2 3 29 29 H 1.08993 * 109.47058 * 205.23007 * 1 2 3 30 30 H 1.09004 * 109.47102 * 325.22870 * 1 2 3 31 31 H 1.07996 * 120.75513 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.32929 * 179.70206 * 4 3 2 33 33 H 1.08005 * 119.54692 * 180.30243 * 5 4 3 34 34 H 1.09004 * 109.62879 * 248.51940 * 11 10 8 35 35 H 1.08999 * 109.63211 * 9.09755 * 11 10 8 36 36 H 1.08995 * 109.64983 * 294.07212 * 12 11 10 37 37 H 1.09003 * 109.42045 * 173.94715 * 12 11 10 38 38 H 1.09003 * 109.46859 * 54.30316 * 14 13 12 39 39 H 1.08998 * 109.46737 * 174.29848 * 14 13 12 40 40 H 0.97004 * 120.00498 * 359.97438 * 17 15 14 41 41 H 0.97004 * 119.99968 * 179.97438 * 21 20 18 42 42 H 1.08995 * 109.49647 * 303.14940 * 26 13 12 43 43 H 1.09001 * 109.49502 * 183.06563 * 26 13 12 44 44 H 1.08995 * 109.63123 * 350.89647 * 27 10 8 45 45 H 1.09001 * 109.62928 * 111.47908 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1469 -0.0054 5 6 4.2322 -0.0840 0.0013 6 7 3.5407 -1.2024 0.0014 7 6 2.2132 -1.2004 0.0005 8 6 1.4766 -2.4860 0.0001 9 8 0.9489 -2.8836 -1.0198 10 7 1.3919 -3.2146 1.1308 11 6 1.9323 -2.7041 2.3999 12 6 0.8371 -2.8212 3.4719 13 7 0.3498 -4.2062 3.5173 14 6 -0.5714 -4.4035 4.6446 15 6 0.1785 -4.2368 5.9411 16 8 1.3635 -3.9786 5.9274 17 7 -0.4677 -4.3746 7.1157 18 6 0.2146 -4.2236 8.2953 19 1 1.2697 -3.9937 8.2831 20 6 -0.4517 -4.3651 9.5064 21 7 -1.7358 -4.6444 9.5211 22 14 0.4778 -4.1586 11.1134 23 1 1.9013 -3.8491 10.8257 24 1 -0.1224 -3.0461 11.8929 25 1 0.3931 -5.4156 11.8994 26 6 -0.2818 -4.5908 2.2480 27 6 0.7621 -4.5436 1.1271 28 1 -0.3633 0.0855 -1.0241 29 1 -0.3633 -0.9296 0.4380 30 1 -0.3633 0.8442 0.5861 31 1 1.6902 2.1414 -0.0004 32 1 4.1722 2.0597 -0.0104 33 1 5.3114 -0.1250 0.0021 34 1 2.8000 -3.2953 2.6926 35 1 2.2204 -1.6596 2.2815 36 1 0.0116 -2.1529 3.2270 37 1 1.2501 -2.5489 4.4432 38 1 -1.3735 -3.6673 4.5914 39 1 -0.9951 -5.4065 4.5962 40 1 -1.4155 -4.5808 7.1267 41 1 -2.2008 -4.7436 10.3666 42 1 -1.0917 -3.8979 2.0201 43 1 -0.6803 -5.6019 2.3316 44 1 0.2761 -4.7159 0.1668 45 1 1.5195 -5.3083 1.2997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112757922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:31 Heat of formation + Delta-G solvation = -15.991241 kcal Electronic energy + Delta-G solvation = -28495.119071 eV Core-core repulsion = 24513.002045 eV Total energy + Delta-G solvation = -3982.117026 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10592 -39.61972 -38.55989 -37.24188 -34.55584 -33.98320 -33.80761 -32.46065 -31.29599 -31.00703 -28.94518 -27.76188 -25.99504 -24.81778 -23.79991 -23.53989 -22.56281 -21.32898 -19.52250 -19.25099 -17.97286 -17.68163 -17.08973 -16.63020 -16.06767 -15.83839 -15.16169 -15.09104 -14.91441 -14.73993 -14.54280 -14.37939 -13.95386 -13.87753 -13.65952 -13.64009 -13.44412 -13.07321 -12.92250 -12.76373 -12.45133 -12.08167 -11.98396 -11.64236 -11.55263 -11.29172 -11.19335 -11.16050 -10.86999 -10.38294 -10.36337 -10.25522 -10.12714 -9.69896 -9.51874 -9.22718 -8.91356 -8.41264 -8.01910 -7.92187 -6.44964 -3.85854 0.57170 0.89735 2.31674 2.75176 3.13906 3.24975 3.31801 3.37831 3.82995 3.88795 3.99977 4.20398 4.29477 4.42171 4.60183 4.62224 4.82949 4.95601 4.99548 5.04598 5.13738 5.20963 5.23411 5.28294 5.28496 5.33746 5.40013 5.49889 5.66869 5.68931 5.73965 5.78074 5.82736 5.85104 5.87459 6.11660 6.14431 6.22342 6.26231 6.42286 7.07839 7.26021 7.29434 7.52450 7.52709 7.91822 8.03160 8.57884 9.14831 9.50862 10.02012 10.72762 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.002618 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.868718 B =10692.265564 C =11497.752621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.100 4.100 3 C -0.077 4.077 4 C -0.156 4.156 5 C 0.096 3.904 6 N -0.453 5.453 7 C 0.096 3.904 8 C 0.582 3.418 9 O -0.534 6.534 10 N -0.597 5.597 11 C 0.122 3.878 12 C 0.040 3.960 13 N -0.514 5.514 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.578 6.578 17 N -0.563 5.563 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.041 3.959 27 C 0.118 3.882 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.027 0.973 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.036 0.964 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 9.902 -18.185 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.103 4.103 3 C -0.103 4.103 4 C -0.176 4.176 5 C -0.063 4.063 6 N -0.163 5.163 7 C -0.043 4.043 8 C 0.367 3.633 9 O -0.410 6.410 10 N -0.330 5.330 11 C -0.001 4.001 12 C -0.088 4.088 13 N -0.239 5.239 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.462 6.462 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.088 4.088 27 C -0.004 4.004 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.180 0.820 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.134 0.866 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.618 8.692 -18.490 20.947 hybrid contribution -1.265 1.338 0.853 2.029 sum 3.353 10.030 -17.637 20.565 Atomic orbital electron populations 1.20806 0.89637 1.03458 1.03293 1.20827 0.97800 0.92705 0.98953 1.21473 0.94216 0.97908 0.96688 1.22334 0.95219 0.99875 1.00155 1.22840 1.00533 0.87231 0.95676 1.67646 1.06427 1.31813 1.10373 1.20882 0.90456 0.93244 0.99740 1.17892 0.79302 0.82704 0.83376 1.90782 1.47393 1.70535 1.32301 1.48155 1.57753 1.18271 1.08790 1.21936 0.97315 0.99287 0.81529 1.22729 0.96479 0.88292 1.01302 1.61496 1.37642 1.23320 1.01434 1.21859 0.93645 1.02017 0.90949 1.19708 0.88252 0.84738 0.84445 1.90479 1.15522 1.53406 1.86822 1.41883 1.11717 1.61804 1.04578 1.19745 0.95737 1.45047 0.82261 0.87820 1.25265 0.95749 0.97234 0.99695 1.69622 1.08304 1.48619 1.27724 0.85806 0.79659 0.77820 0.81104 1.19192 1.20788 1.20732 1.22516 0.95181 1.01588 0.89540 1.21788 0.96125 0.83181 0.99302 0.90052 0.91326 0.90514 0.84105 0.84182 0.81964 0.89623 0.90535 0.95487 0.86552 0.93426 0.89087 0.77488 0.91903 0.94628 0.89248 0.88609 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.71 36.01 0.35 -0.71 16 2 C -0.10 -1.07 5.93 -104.09 -0.62 -1.68 16 3 C -0.08 -0.62 9.87 -39.31 -0.39 -1.01 16 4 C -0.16 -1.15 10.11 -39.32 -0.40 -1.55 16 5 C 0.10 0.89 11.18 -17.56 -0.20 0.69 16 6 N -0.45 -5.79 10.29 -9.80 -0.10 -5.89 16 7 C 0.10 1.26 4.51 -83.01 -0.37 0.89 16 8 C 0.58 8.58 5.72 -12.18 -0.07 8.51 16 9 O -0.53 -9.11 16.56 5.35 0.09 -9.02 16 10 N -0.60 -8.29 3.00 -173.17 -0.52 -8.81 16 11 C 0.12 1.72 6.51 -3.37 -0.02 1.69 16 12 C 0.04 0.63 5.27 -3.47 -0.02 0.61 16 13 N -0.51 -8.20 4.37 -235.47 -1.03 -9.23 16 14 C 0.05 0.79 5.45 -4.97 -0.03 0.76 16 15 C 0.44 10.01 7.44 -10.99 -0.08 9.93 16 16 O -0.58 -14.83 13.91 5.55 0.08 -14.75 16 17 N -0.56 -13.83 5.29 -10.97 -0.06 -13.89 16 18 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.12 13.05 55.50 0.72 -23.39 16 22 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.04 0.52 5.62 -3.70 -0.02 0.50 16 27 C 0.12 1.51 6.61 -3.60 -0.02 1.48 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.74 6.91 -51.93 -0.36 0.39 16 30 H 0.08 0.55 8.12 -51.93 -0.42 0.12 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 32 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 33 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.01 6.45 -51.93 -0.33 0.67 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.12 2.17 5.76 -51.93 -0.30 1.87 16 38 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 39 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 40 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 41 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.99 7.99 -51.93 -0.41 0.57 16 44 H 0.10 1.18 7.04 -51.93 -0.37 0.82 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -33.28 373.08 -8.59 -41.88 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.25 Total: 9.50 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -2.13 Total: 12.35 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.98 Total: -61.22 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.17 Total: -23.77 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.28 -8.59 -41.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112757922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.884 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds