Wall clock time and date at job start Tue Mar 31 2020 17:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38630 * 120.47023 * 2 1 4 4 C 1.38580 * 118.48877 * 180.25612 * 3 2 1 5 5 C 1.38606 * 119.34830 * 359.42964 * 4 3 2 6 6 N 1.31491 * 120.90227 * 0.57984 * 5 4 3 7 7 C 1.32743 * 121.64540 * 359.72158 * 6 5 4 8 8 C 1.48165 * 119.72830 * 179.97438 * 7 6 5 9 9 O 1.21520 * 120.00154 * 255.64931 * 8 7 6 10 10 N 1.34775 * 120.00108 * 75.64548 * 8 7 6 11 11 C 1.47079 * 120.87846 * 4.79458 * 10 8 7 12 12 C 1.53694 * 108.27694 * 128.75427 * 11 10 8 13 13 N 1.46896 * 109.25696 * 54.08122 * 12 11 10 14 14 C 1.46910 * 110.99861 * 172.60774 * 13 12 11 15 15 C 1.50699 * 109.46983 * 294.29897 * 14 13 12 16 16 O 1.21285 * 119.99943 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99649 * 180.02562 * 15 14 13 18 18 C 1.37104 * 120.00171 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99350 * 0.02562 * 18 17 15 20 20 C 1.38945 * 120.00416 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99856 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99993 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47353 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47062 * 120.00490 * 22 20 18 25 25 H 1.48499 * 109.47292 * 239.99852 * 22 20 18 26 26 C 1.46895 * 111.26874 * 296.75248 * 13 12 11 27 27 C 1.47077 * 120.88188 * 185.06800 * 10 8 7 28 28 H 1.09000 * 109.47027 * 85.22741 * 1 2 3 29 29 H 1.08993 * 109.47058 * 205.23007 * 1 2 3 30 30 H 1.09004 * 109.47102 * 325.22870 * 1 2 3 31 31 H 1.07996 * 120.75513 * 359.97438 * 3 2 1 32 32 H 1.07994 * 120.32929 * 179.70206 * 4 3 2 33 33 H 1.08005 * 119.54692 * 180.30243 * 5 4 3 34 34 H 1.09004 * 109.62879 * 248.51940 * 11 10 8 35 35 H 1.08999 * 109.63211 * 9.09755 * 11 10 8 36 36 H 1.08995 * 109.64983 * 294.07212 * 12 11 10 37 37 H 1.09003 * 109.42045 * 173.94715 * 12 11 10 38 38 H 1.09003 * 109.46859 * 54.30316 * 14 13 12 39 39 H 1.08998 * 109.46737 * 174.29848 * 14 13 12 40 40 H 0.97004 * 120.00498 * 359.97438 * 17 15 14 41 41 H 0.97004 * 119.99968 * 179.97438 * 21 20 18 42 42 H 1.08995 * 109.49647 * 303.14940 * 26 13 12 43 43 H 1.09001 * 109.49502 * 183.06563 * 26 13 12 44 44 H 1.08995 * 109.63123 * 350.89647 * 27 10 8 45 45 H 1.09001 * 109.62928 * 111.47908 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5950 1.1469 -0.0054 5 6 4.2322 -0.0840 0.0013 6 7 3.5407 -1.2024 0.0014 7 6 2.2132 -1.2004 0.0005 8 6 1.4766 -2.4860 0.0001 9 8 0.9489 -2.8836 -1.0198 10 7 1.3919 -3.2146 1.1308 11 6 1.9323 -2.7041 2.3999 12 6 0.8371 -2.8212 3.4719 13 7 0.3498 -4.2062 3.5173 14 6 -0.5714 -4.4035 4.6446 15 6 0.1785 -4.2368 5.9411 16 8 1.3635 -3.9786 5.9274 17 7 -0.4677 -4.3746 7.1157 18 6 0.2146 -4.2236 8.2953 19 1 1.2697 -3.9937 8.2831 20 6 -0.4517 -4.3651 9.5064 21 7 -1.7358 -4.6444 9.5211 22 14 0.4778 -4.1586 11.1134 23 1 1.9013 -3.8491 10.8257 24 1 -0.1224 -3.0461 11.8929 25 1 0.3931 -5.4156 11.8994 26 6 -0.2818 -4.5908 2.2480 27 6 0.7621 -4.5436 1.1271 28 1 -0.3633 0.0855 -1.0241 29 1 -0.3633 -0.9296 0.4380 30 1 -0.3633 0.8442 0.5861 31 1 1.6902 2.1414 -0.0004 32 1 4.1722 2.0597 -0.0104 33 1 5.3114 -0.1250 0.0021 34 1 2.8000 -3.2953 2.6926 35 1 2.2204 -1.6596 2.2815 36 1 0.0116 -2.1529 3.2270 37 1 1.2501 -2.5489 4.4432 38 1 -1.3735 -3.6673 4.5914 39 1 -0.9951 -5.4065 4.5962 40 1 -1.4155 -4.5808 7.1267 41 1 -2.2008 -4.7436 10.3666 42 1 -1.0917 -3.8979 2.0201 43 1 -0.6803 -5.6019 2.3316 44 1 0.2761 -4.7159 0.1668 45 1 1.5195 -5.3083 1.2997 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112757922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:30 Heat of formation + Delta-G solvation = -40.523822 kcal Electronic energy + Delta-G solvation = -28496.182883 eV Core-core repulsion = 24513.002045 eV Total energy + Delta-G solvation = -3983.180838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.01956 -40.73483 -40.03292 -38.64218 -36.08443 -35.47571 -34.71410 -33.27989 -33.22508 -32.09970 -30.26356 -28.55616 -27.46111 -26.05192 -25.16175 -24.64969 -23.30684 -22.37895 -21.07130 -20.50309 -19.86841 -18.78581 -17.94040 -17.82618 -17.52785 -16.66794 -16.56981 -16.41096 -16.23094 -16.04734 -15.64802 -15.45821 -15.31775 -15.25833 -15.13202 -14.71529 -14.23473 -14.04609 -13.93387 -13.77923 -13.52477 -13.51092 -13.24824 -13.00283 -12.82924 -12.78067 -12.44661 -12.40132 -12.30954 -12.22750 -12.09411 -11.46155 -11.39765 -10.81263 -10.51184 -10.35974 -9.99586 -9.97791 -9.88307 -9.25718 -8.44938 -5.93029 -0.16828 0.22454 1.24886 1.37557 1.43263 1.56921 1.72003 2.07354 2.29074 2.65215 2.67642 3.04079 3.22383 3.35076 3.57815 3.76357 3.78843 3.90083 3.93975 4.02667 4.08154 4.11961 4.23479 4.32544 4.40567 4.45455 4.47181 4.51674 4.59480 4.60280 4.67205 4.68189 4.77239 4.84833 4.96813 5.02185 5.10316 5.16175 5.27804 5.43464 5.62680 5.78744 6.02496 6.07985 6.16972 6.62542 6.74959 6.85828 7.15337 7.59029 8.14335 8.72694 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016957 B = 0.002618 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.868718 B =10692.265564 C =11497.752621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.110 4.110 3 C -0.076 4.076 4 C -0.140 4.140 5 C 0.084 3.916 6 N -0.488 5.488 7 C 0.061 3.939 8 C 0.582 3.418 9 O -0.566 6.566 10 N -0.597 5.597 11 C 0.137 3.863 12 C 0.048 3.952 13 N -0.531 5.531 14 C 0.059 3.941 15 C 0.443 3.557 16 O -0.612 6.612 17 N -0.575 5.575 18 C -0.328 4.328 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.273 1.273 26 C 0.047 3.953 27 C 0.116 3.884 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.100 0.900 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.187 0.813 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.043 0.957 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 11.508 -18.584 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.113 4.113 3 C -0.101 4.101 4 C -0.160 4.160 5 C -0.075 4.075 6 N -0.198 5.198 7 C -0.076 4.076 8 C 0.369 3.631 9 O -0.445 6.445 10 N -0.329 5.329 11 C 0.014 3.986 12 C -0.081 4.081 13 N -0.256 5.256 14 C -0.072 4.072 15 C 0.230 3.770 16 O -0.498 6.498 17 N -0.212 5.212 18 C -0.458 4.458 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.563 5.563 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.081 4.081 27 C -0.006 4.006 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.193 0.807 32 H 0.197 0.803 33 H 0.204 0.796 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.415 10.287 -18.897 21.964 hybrid contribution -1.127 0.899 0.896 1.697 sum 3.289 11.187 -18.001 21.448 Atomic orbital electron populations 1.20813 0.89081 1.03301 1.03710 1.21061 0.98424 0.92886 0.98929 1.21917 0.94706 0.98185 0.95300 1.22778 0.95283 1.00538 0.97376 1.23392 1.01707 0.87258 0.95187 1.67558 1.06571 1.33942 1.11750 1.20733 0.90951 0.93077 1.02883 1.18261 0.78784 0.83259 0.82825 1.90740 1.48905 1.71584 1.33221 1.48207 1.57541 1.18566 1.08557 1.21704 0.96162 0.99519 0.81243 1.22545 0.97011 0.88609 0.99924 1.61452 1.38226 1.23472 1.02484 1.21736 0.93262 1.04016 0.88187 1.20698 0.88094 0.82470 0.85705 1.90464 1.17412 1.54262 1.87646 1.41941 1.11839 1.62741 1.04678 1.19682 0.95163 1.46945 0.84019 0.90218 1.26002 0.96584 0.96468 1.02235 1.69680 1.09140 1.48705 1.28759 0.84899 0.78113 0.78211 0.77309 1.19723 1.19700 1.19820 1.22555 0.94992 1.02963 0.87553 1.21861 0.96243 0.82809 0.99642 0.89764 0.93463 0.88142 0.80745 0.80280 0.79589 0.91133 0.89755 0.94446 0.89848 0.91442 0.86645 0.77056 0.91396 0.93834 0.86994 0.88114 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 9.71 71.24 0.69 -1.26 16 2 C -0.11 -2.22 5.93 -19.52 -0.12 -2.33 16 3 C -0.08 -1.00 9.87 22.45 0.22 -0.78 16 4 C -0.14 -1.62 10.11 22.44 0.23 -1.40 16 5 C 0.08 1.41 11.18 84.83 0.95 2.36 16 6 N -0.49 -12.39 10.29 -184.91 -1.90 -14.29 16 7 C 0.06 1.61 4.51 41.89 0.19 1.80 16 8 C 0.58 17.50 5.72 86.88 0.50 18.00 16 9 O -0.57 -19.81 16.56 -3.78 -0.06 -19.87 16 10 N -0.60 -16.77 3.00 -820.09 -2.46 -19.24 16 11 C 0.14 3.93 6.51 86.50 0.56 4.49 16 12 C 0.05 1.50 5.27 86.54 0.46 1.96 16 13 N -0.53 -16.56 4.37 -898.88 -3.93 -20.49 16 14 C 0.06 1.94 5.45 85.55 0.47 2.40 16 15 C 0.44 20.24 7.44 87.66 0.65 20.89 16 16 O -0.61 -32.32 13.91 -3.05 -0.04 -32.36 16 17 N -0.57 -28.63 5.29 -307.00 -1.62 -30.25 16 18 C -0.33 -18.24 9.68 84.04 0.81 -17.42 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 21 N -0.92 -49.06 13.05 21.66 0.28 -48.77 16 22 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.05 1.13 5.62 86.39 0.49 1.62 16 27 C 0.12 2.92 6.61 86.35 0.57 3.50 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.02 6.91 -2.39 -0.02 1.00 16 30 H 0.10 1.21 8.12 -2.39 -0.02 1.19 16 31 H 0.18 1.07 8.06 -2.91 -0.02 1.04 16 32 H 0.18 0.64 8.06 -2.91 -0.02 0.61 16 33 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 35 H 0.08 2.28 6.45 -2.39 -0.02 2.26 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 37 H 0.08 3.22 5.76 -2.39 -0.01 3.21 16 38 H 0.07 1.99 8.12 -2.39 -0.02 1.97 16 39 H 0.12 3.27 7.97 -2.39 -0.02 3.25 16 40 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 41 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 42 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 2.19 7.99 -2.39 -0.02 2.17 16 44 H 0.10 2.46 7.04 -2.39 -0.02 2.45 16 45 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -74.53 373.08 -0.29 -74.82 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.29 Total: 32.51 kcal Atomic # 6 Polarization: 26.45 SS G_CDS: 7.13 Total: 33.58 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -9.63 Total: -133.04 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.10 Total: -52.23 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -74.53 -0.29 -74.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112757922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.296 kcal (2) G-P(sol) polarization free energy of solvation -74.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds