Wall clock time and date at job start Tue Mar 31 2020 16:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38167 * 119.55453 * 2 1 4 4 C 1.39796 * 119.00071 * 180.02562 * 3 2 1 5 5 C 1.48151 * 120.92218 * 179.97438 * 4 3 2 6 6 O 1.21521 * 119.99588 * 217.86968 * 5 4 3 7 7 N 1.34774 * 120.00311 * 37.86416 * 5 4 3 8 8 C 1.47085 * 120.88032 * 5.57434 * 7 5 4 9 9 C 1.53694 * 108.27456 * 128.75480 * 8 7 5 10 10 N 1.46897 * 109.25840 * 54.08361 * 9 8 7 11 11 C 1.46895 * 111.00296 * 172.60610 * 10 9 8 12 12 C 1.50705 * 109.47244 * 294.30491 * 11 10 9 13 13 O 1.21293 * 119.99736 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00021 * 180.02562 * 12 11 10 15 15 C 1.37095 * 119.99585 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00671 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99858 * 179.97438 * 15 14 12 18 18 N 1.31417 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00204 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47186 * 59.99964 * 19 17 15 21 21 H 1.48502 * 109.47335 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47247 * 300.00126 * 19 17 15 23 23 C 1.46906 * 111.26911 * 296.75744 * 10 9 8 24 24 C 1.47079 * 120.87991 * 185.85357 * 7 5 4 25 25 C 1.39837 * 118.15524 * 0.02562 * 4 3 2 26 26 C 1.38119 * 119.00278 * 0.02562 * 25 4 3 27 27 N 1.31798 * 119.55067 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47038 * 269.97796 * 1 2 3 29 29 H 1.09001 * 109.46664 * 29.97348 * 1 2 3 30 30 H 1.08998 * 109.47527 * 149.97623 * 1 2 3 31 31 H 1.08006 * 120.50107 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.62729 * 248.52525 * 8 7 5 33 33 H 1.08995 * 109.62414 * 9.10622 * 8 7 5 34 34 H 1.09005 * 109.64745 * 294.07867 * 9 8 7 35 35 H 1.08999 * 109.41983 * 173.94448 * 9 8 7 36 36 H 1.08999 * 109.47016 * 54.30053 * 11 10 9 37 37 H 1.08996 * 109.47475 * 174.30342 * 11 10 9 38 38 H 0.96999 * 120.00236 * 359.97438 * 14 12 11 39 39 H 0.96996 * 119.99974 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.49081 * 303.14096 * 23 10 9 41 41 H 1.08996 * 109.51198 * 183.07915 * 23 10 9 42 42 H 1.08995 * 109.62900 * 350.89676 * 24 7 5 43 43 H 1.09002 * 109.62492 * 111.47988 * 24 7 5 44 44 H 1.08002 * 120.49751 * 180.02562 * 25 4 3 45 45 H 1.08002 * 119.55443 * 180.25291 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3600 2.4519 -0.0011 6 8 5.3855 2.5361 -0.6476 7 7 3.9263 3.5079 0.7152 8 6 2.7567 3.3913 1.5993 9 6 3.1459 3.9266 2.9865 10 7 3.6856 5.2857 2.8475 11 6 3.9070 5.9014 4.1627 12 6 2.5823 6.1025 4.8526 13 8 1.5549 5.7665 4.3025 14 7 2.5393 6.6567 6.0804 15 6 1.3341 6.8401 6.7077 16 1 0.4193 6.5402 6.2183 17 6 1.2897 7.4110 7.9737 18 7 2.4030 7.7746 8.5700 19 14 -0.3522 7.6603 8.8289 20 1 -1.0237 6.3473 9.0037 21 1 -0.1284 8.2821 10.1588 22 1 -1.2099 8.5490 8.0044 23 6 4.9191 5.2902 2.0497 24 6 4.6064 4.8092 0.6288 25 6 4.2343 -0.0508 -0.0016 26 6 3.4741 -1.2040 -0.0026 27 7 2.1570 -1.1465 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6494 2.1378 -0.0004 32 1 1.9321 3.9784 1.1951 33 1 2.4607 2.3453 1.6788 34 1 3.9017 3.2787 3.4305 35 1 2.2640 3.9492 3.6267 36 1 4.5364 5.2490 4.7679 37 1 4.3998 6.8650 4.0345 38 1 3.3609 6.9258 6.5201 39 1 2.3720 8.1734 9.4536 40 1 5.6503 4.6234 2.5068 41 1 5.3237 6.3015 2.0106 42 1 5.5338 4.7010 0.0664 43 1 3.9561 5.5300 0.1331 44 1 5.3129 -0.1054 -0.0017 45 1 3.9652 -2.1658 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113443896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:30 Heat of formation + Delta-G solvation = -11.505016 kcal Electronic energy + Delta-G solvation = -28234.210143 eV Core-core repulsion = 24252.287655 eV Total energy + Delta-G solvation = -3981.922488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13981 -39.74932 -38.66033 -37.32717 -34.75683 -33.89490 -33.35116 -32.85406 -31.32328 -30.97438 -28.97801 -27.93905 -26.12815 -24.71301 -24.03359 -23.69305 -22.77533 -21.11542 -19.43455 -19.20529 -17.96746 -17.61382 -17.04679 -16.40175 -16.20389 -15.90590 -15.46876 -15.16110 -15.02170 -14.84737 -14.66011 -14.53044 -13.99582 -13.93556 -13.75631 -13.67874 -13.58013 -13.02766 -12.71667 -12.56453 -12.47036 -12.03159 -12.01119 -11.71038 -11.57496 -11.38363 -11.22997 -11.18435 -10.89914 -10.49873 -10.47812 -10.26581 -10.08693 -9.67308 -9.52306 -9.25171 -9.00386 -8.46475 -8.05228 -7.96391 -6.46901 -3.88096 0.50671 0.74444 2.47641 2.69020 3.15952 3.22589 3.26249 3.44207 3.81263 3.87018 3.95674 4.03347 4.17889 4.41365 4.60367 4.71643 4.77839 4.90657 4.97012 5.10589 5.13534 5.17455 5.18838 5.27271 5.32210 5.33526 5.34635 5.39410 5.59973 5.62863 5.70385 5.72888 5.76274 5.77165 5.82877 6.02646 6.08675 6.19237 6.28494 6.34978 7.01326 7.19299 7.23062 7.49875 7.61757 7.82979 8.00108 8.55268 9.12145 9.48159 9.99078 10.70618 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.002633 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.604964 B =10631.269897 C =11948.095249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.127 3.873 3 C -0.143 4.143 4 C -0.077 4.077 5 C 0.559 3.441 6 O -0.536 6.536 7 N -0.602 5.602 8 C 0.104 3.896 9 C 0.039 3.961 10 N -0.514 5.514 11 C 0.046 3.954 12 C 0.443 3.557 13 O -0.579 6.579 14 N -0.562 5.562 15 C -0.301 4.301 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.901 5.901 19 Si 0.931 3.069 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.040 3.960 24 C 0.119 3.881 25 C -0.130 4.130 26 C 0.103 3.897 27 N -0.473 5.473 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.028 0.972 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.392 0.608 39 H 0.273 0.727 40 H 0.036 0.964 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 -12.152 -14.823 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.011 4.011 3 C -0.164 4.164 4 C -0.088 4.088 5 C 0.347 3.653 6 O -0.413 6.413 7 N -0.334 5.334 8 C -0.018 4.018 9 C -0.089 4.089 10 N -0.239 5.239 11 C -0.085 4.085 12 C 0.228 3.772 13 O -0.464 6.464 14 N -0.198 5.198 15 C -0.430 4.430 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.089 4.089 24 C -0.003 4.003 25 C -0.151 4.151 26 C -0.055 4.055 27 N -0.183 5.183 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.046 0.954 35 H 0.136 0.864 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.225 0.775 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.161 0.839 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.705 -12.695 -15.573 20.273 hybrid contribution 0.970 0.756 1.358 1.832 sum 3.675 -11.939 -14.216 18.925 Atomic orbital electron populations 1.20771 0.88120 1.03771 1.03717 1.21317 0.97398 0.87740 0.94613 1.22361 0.93390 1.00384 1.00238 1.20315 0.93995 0.94248 1.00249 1.18265 0.84397 0.83018 0.79601 1.90774 1.23904 1.83115 1.43556 1.48159 1.31236 1.10548 1.43499 1.22413 0.87637 1.01932 0.89814 1.22740 1.01808 0.87870 0.96528 1.61515 1.27153 1.19737 1.15497 1.21858 0.97248 0.99993 0.89402 1.19687 0.89912 0.84584 0.83020 1.90468 1.34994 1.55215 1.65729 1.41866 1.09759 1.53760 1.14419 1.19644 0.86617 1.37986 0.98761 0.87901 1.25272 0.98822 0.96929 0.96840 1.69602 1.26781 1.41911 1.15927 0.85919 0.81402 0.78780 0.78133 1.19886 1.20970 1.19842 1.22509 0.91311 1.01552 0.93521 1.21778 0.98603 0.82979 0.96989 1.22211 1.02069 0.91739 0.99042 1.22750 0.89128 0.98378 0.95194 1.67411 1.10270 1.29476 1.11166 0.89797 0.90349 0.90236 0.83572 0.89552 0.89093 0.95424 0.86436 0.93424 0.89104 0.77471 0.91755 0.94612 0.89262 0.88624 0.90137 0.83920 0.81973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.17 36.01 0.37 -0.41 16 2 C 0.13 1.25 6.78 -82.63 -0.56 0.69 16 3 C -0.14 -1.43 7.14 -39.03 -0.28 -1.71 16 4 C -0.08 -0.88 5.22 -104.65 -0.55 -1.42 16 5 C 0.56 7.39 7.41 -12.19 -0.09 7.30 16 6 O -0.54 -8.49 16.39 5.35 0.09 -8.40 16 7 N -0.60 -7.47 3.00 -173.18 -0.52 -7.99 16 8 C 0.10 1.27 5.03 -3.36 -0.02 1.25 16 9 C 0.04 0.58 5.27 -3.47 -0.02 0.56 16 10 N -0.51 -7.91 4.37 -235.47 -1.03 -8.94 16 11 C 0.05 0.77 5.45 -4.98 -0.03 0.75 16 12 C 0.44 9.83 7.44 -10.98 -0.08 9.75 16 13 O -0.58 -14.50 13.91 5.55 0.08 -14.42 16 14 N -0.56 -13.66 5.29 -10.96 -0.06 -13.72 16 15 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 16 H 0.10 2.88 7.16 -52.49 -0.38 2.51 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -23.97 13.05 55.50 0.72 -23.25 16 19 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 C 0.04 0.49 5.62 -3.70 -0.02 0.47 16 24 C 0.12 1.40 6.61 -3.60 -0.02 1.38 16 25 C -0.13 -1.32 9.75 -39.03 -0.38 -1.70 16 26 C 0.10 0.95 11.17 -17.60 -0.20 0.76 16 27 N -0.47 -5.09 10.25 -9.52 -0.10 -5.18 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.15 1.27 6.40 -52.48 -0.34 0.93 16 32 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 33 H 0.09 0.99 4.80 -51.93 -0.25 0.74 16 34 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.12 2.10 5.77 -51.93 -0.30 1.80 16 36 H 0.05 0.75 8.12 -51.93 -0.42 0.32 16 37 H 0.09 1.37 7.97 -51.93 -0.41 0.95 16 38 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.96 7.99 -51.93 -0.41 0.54 16 42 H 0.10 1.11 7.04 -51.93 -0.37 0.75 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -32.43 369.78 -8.51 -40.94 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -6.13 Total: 9.96 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -2.12 Total: 9.94 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.98 Total: -59.07 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.16 Total: -22.82 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.43 -8.51 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113443896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.437 kcal (2) G-P(sol) polarization free energy of solvation -32.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds