Wall clock time and date at job start Tue Mar 31 2020 16:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38167 * 119.55453 * 2 1 4 4 C 1.39796 * 119.00071 * 180.02562 * 3 2 1 5 5 C 1.48151 * 120.92218 * 179.97438 * 4 3 2 6 6 O 1.21521 * 119.99588 * 217.86968 * 5 4 3 7 7 N 1.34774 * 120.00311 * 37.86416 * 5 4 3 8 8 C 1.47085 * 120.88032 * 5.57434 * 7 5 4 9 9 C 1.53694 * 108.27456 * 128.75480 * 8 7 5 10 10 N 1.46897 * 109.25840 * 54.08361 * 9 8 7 11 11 C 1.46895 * 111.00296 * 172.60610 * 10 9 8 12 12 C 1.50705 * 109.47244 * 294.30491 * 11 10 9 13 13 O 1.21293 * 119.99736 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00021 * 180.02562 * 12 11 10 15 15 C 1.37095 * 119.99585 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00671 * 0.02562 * 15 14 12 17 17 C 1.38951 * 119.99858 * 179.97438 * 15 14 12 18 18 N 1.31417 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00204 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47186 * 59.99964 * 19 17 15 21 21 H 1.48502 * 109.47335 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47247 * 300.00126 * 19 17 15 23 23 C 1.46906 * 111.26911 * 296.75744 * 10 9 8 24 24 C 1.47079 * 120.87991 * 185.85357 * 7 5 4 25 25 C 1.39837 * 118.15524 * 0.02562 * 4 3 2 26 26 C 1.38119 * 119.00278 * 0.02562 * 25 4 3 27 27 N 1.31798 * 119.55067 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.47038 * 269.97796 * 1 2 3 29 29 H 1.09001 * 109.46664 * 29.97348 * 1 2 3 30 30 H 1.08998 * 109.47527 * 149.97623 * 1 2 3 31 31 H 1.08006 * 120.50107 * 359.97438 * 3 2 1 32 32 H 1.08994 * 109.62729 * 248.52525 * 8 7 5 33 33 H 1.08995 * 109.62414 * 9.10622 * 8 7 5 34 34 H 1.09005 * 109.64745 * 294.07867 * 9 8 7 35 35 H 1.08999 * 109.41983 * 173.94448 * 9 8 7 36 36 H 1.08999 * 109.47016 * 54.30053 * 11 10 9 37 37 H 1.08996 * 109.47475 * 174.30342 * 11 10 9 38 38 H 0.96999 * 120.00236 * 359.97438 * 14 12 11 39 39 H 0.96996 * 119.99974 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.49081 * 303.14096 * 23 10 9 41 41 H 1.08996 * 109.51198 * 183.07915 * 23 10 9 42 42 H 1.08995 * 109.62900 * 350.89676 * 24 7 5 43 43 H 1.09002 * 109.62492 * 111.47988 * 24 7 5 44 44 H 1.08002 * 120.49751 * 180.02562 * 25 4 3 45 45 H 1.08002 * 119.55443 * 180.25291 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3600 2.4519 -0.0011 6 8 5.3855 2.5361 -0.6476 7 7 3.9263 3.5079 0.7152 8 6 2.7567 3.3913 1.5993 9 6 3.1459 3.9266 2.9865 10 7 3.6856 5.2857 2.8475 11 6 3.9070 5.9014 4.1627 12 6 2.5823 6.1025 4.8526 13 8 1.5549 5.7665 4.3025 14 7 2.5393 6.6567 6.0804 15 6 1.3341 6.8401 6.7077 16 1 0.4193 6.5402 6.2183 17 6 1.2897 7.4110 7.9737 18 7 2.4030 7.7746 8.5700 19 14 -0.3522 7.6603 8.8289 20 1 -1.0237 6.3473 9.0037 21 1 -0.1284 8.2821 10.1588 22 1 -1.2099 8.5490 8.0044 23 6 4.9191 5.2902 2.0497 24 6 4.6064 4.8092 0.6288 25 6 4.2343 -0.0508 -0.0016 26 6 3.4741 -1.2040 -0.0026 27 7 2.1570 -1.1465 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6494 2.1378 -0.0004 32 1 1.9321 3.9784 1.1951 33 1 2.4607 2.3453 1.6788 34 1 3.9017 3.2787 3.4305 35 1 2.2640 3.9492 3.6267 36 1 4.5364 5.2490 4.7679 37 1 4.3998 6.8650 4.0345 38 1 3.3609 6.9258 6.5201 39 1 2.3720 8.1734 9.4536 40 1 5.6503 4.6234 2.5068 41 1 5.3237 6.3015 2.0106 42 1 5.5338 4.7010 0.0664 43 1 3.9561 5.5300 0.1331 44 1 5.3129 -0.1054 -0.0017 45 1 3.9652 -2.1658 0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113443896.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:30 Heat of formation + Delta-G solvation = -34.621458 kcal Electronic energy + Delta-G solvation = -28235.212548 eV Core-core repulsion = 24252.287655 eV Total energy + Delta-G solvation = -3982.924893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.03671 -40.77204 -40.12273 -38.67876 -36.12738 -35.58209 -34.13271 -33.66663 -33.25289 -31.99716 -30.25892 -28.62324 -27.56692 -26.06626 -25.03903 -24.89220 -23.64749 -22.12270 -21.06353 -20.28754 -19.85451 -18.60887 -17.96416 -17.73884 -17.22579 -16.90210 -16.61764 -16.50290 -16.34478 -16.08923 -15.80693 -15.49104 -15.31274 -15.30076 -15.25118 -14.72029 -14.38134 -14.23204 -13.92042 -13.50744 -13.32819 -13.24063 -13.10557 -12.98332 -12.81969 -12.75354 -12.47029 -12.41708 -12.27086 -12.22183 -12.10708 -11.50769 -11.41015 -10.92210 -10.50391 -10.35572 -10.00213 -9.97469 -9.87722 -9.27297 -8.44579 -5.92850 -0.32623 0.00918 1.41145 1.43452 1.49636 1.53751 1.72440 2.07376 2.29162 2.64424 2.71988 3.10867 3.22741 3.30601 3.36021 3.68252 3.77103 3.88809 3.91462 3.99775 4.09405 4.15609 4.23029 4.36412 4.40714 4.44509 4.48259 4.52511 4.58859 4.64843 4.67413 4.76778 4.80371 4.86124 4.96102 4.96573 4.98619 5.18916 5.29032 5.43141 5.59228 5.77704 6.02258 6.08147 6.17157 6.62284 6.81903 6.87862 7.14977 7.58968 8.13666 8.72626 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015159 B = 0.002633 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.604964 B =10631.269897 C =11948.095249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.120 3.880 3 C -0.145 4.145 4 C -0.094 4.094 5 C 0.561 3.439 6 O -0.566 6.566 7 N -0.600 5.600 8 C 0.116 3.884 9 C 0.042 3.958 10 N -0.527 5.527 11 C 0.057 3.943 12 C 0.444 3.556 13 O -0.609 6.609 14 N -0.575 5.575 15 C -0.330 4.330 16 H 0.082 0.918 17 C -0.014 4.014 18 N -0.923 5.923 19 Si 0.991 3.009 20 H -0.271 1.271 21 H -0.274 1.274 22 H -0.271 1.271 23 C 0.045 3.955 24 C 0.118 3.882 25 C -0.135 4.135 26 C 0.104 3.896 27 N -0.491 5.491 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.157 0.843 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.029 0.971 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.395 0.605 39 H 0.277 0.723 40 H 0.037 0.963 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.150 0.850 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -12.542 -15.249 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.017 4.017 3 C -0.165 4.165 4 C -0.105 4.105 5 C 0.350 3.650 6 O -0.446 6.446 7 N -0.332 5.332 8 C -0.007 4.007 9 C -0.087 4.087 10 N -0.252 5.252 11 C -0.074 4.074 12 C 0.231 3.769 13 O -0.495 6.495 14 N -0.212 5.212 15 C -0.459 4.459 16 H 0.100 0.900 17 C -0.213 4.213 18 N -0.564 5.564 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.197 1.197 23 C -0.083 4.083 24 C -0.004 4.004 25 C -0.156 4.156 26 C -0.052 4.052 27 N -0.201 5.201 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.175 0.825 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.047 0.953 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.132 0.868 38 H 0.229 0.771 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.167 0.833 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.776 -13.084 -16.005 20.858 hybrid contribution 0.971 0.824 1.418 1.906 sum 3.747 -12.260 -14.586 19.419 Atomic orbital electron populations 1.20851 0.86468 1.04692 1.04297 1.21723 0.98596 0.87482 0.93933 1.22458 0.92877 1.01020 1.00118 1.20334 0.94581 0.93878 1.01732 1.18506 0.84021 0.83496 0.78970 1.90752 1.25303 1.83675 1.44895 1.48195 1.31117 1.10726 1.43130 1.22317 0.87451 1.02636 0.88268 1.22618 1.00476 0.88036 0.97571 1.61502 1.29014 1.19869 1.14865 1.21735 0.93897 1.01783 0.89944 1.20654 0.91673 0.82397 0.82196 1.90451 1.36969 1.55809 1.66279 1.41941 1.09127 1.54855 1.15310 1.19628 0.87042 1.39513 0.99735 0.89987 1.26018 1.02105 0.96245 0.96965 1.69669 1.28253 1.42183 1.16274 0.85018 0.77519 0.78687 0.77321 1.19617 1.19846 1.19659 1.22565 0.89871 1.02929 0.92970 1.21837 0.98927 0.82826 0.96765 1.22377 1.02589 0.91652 0.98982 1.23216 0.88778 0.99327 0.93915 1.67492 1.10975 1.29948 1.11720 0.89270 0.88848 0.89945 0.82536 0.89364 0.87749 0.95280 0.89605 0.91889 0.86776 0.77142 0.91410 0.94464 0.87185 0.88286 0.89466 0.83254 0.79116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.17 71.24 0.72 -0.65 16 2 C 0.12 2.21 6.78 42.55 0.29 2.50 16 3 C -0.14 -2.72 7.14 22.63 0.16 -2.56 16 4 C -0.09 -2.06 5.22 -19.88 -0.10 -2.16 16 5 C 0.56 14.33 7.41 86.88 0.64 14.97 16 6 O -0.57 -17.60 16.39 -3.78 -0.06 -17.66 16 7 N -0.60 -14.15 3.00 -820.12 -2.46 -16.61 16 8 C 0.12 2.70 5.03 86.50 0.44 3.13 16 9 C 0.04 1.22 5.27 86.54 0.46 1.67 16 10 N -0.53 -15.50 4.37 -898.90 -3.93 -19.42 16 11 C 0.06 1.85 5.45 85.56 0.47 2.31 16 12 C 0.44 19.77 7.44 87.66 0.65 20.43 16 13 O -0.61 -30.98 13.91 -3.07 -0.04 -31.02 16 14 N -0.57 -28.28 5.29 -306.99 -1.62 -29.91 16 15 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 16 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 17 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 18 N -0.92 -48.95 13.05 21.66 0.28 -48.66 16 19 Si 0.99 41.86 29.55 68.60 2.03 43.89 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 23 C 0.04 1.00 5.62 86.38 0.49 1.49 16 24 C 0.12 2.59 6.61 86.35 0.57 3.16 16 25 C -0.14 -2.60 9.75 22.63 0.22 -2.38 16 26 C 0.10 1.78 11.17 84.66 0.95 2.72 16 27 N -0.49 -9.86 10.25 -184.05 -1.89 -11.74 16 28 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.16 2.50 6.40 -2.91 -0.02 2.48 16 32 H 0.09 2.05 8.05 -2.39 -0.02 2.04 16 33 H 0.10 2.16 4.80 -2.39 -0.01 2.15 16 34 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.09 3.11 5.77 -2.39 -0.01 3.09 16 36 H 0.06 1.87 8.12 -2.39 -0.02 1.85 16 37 H 0.11 3.17 7.97 -2.39 -0.02 3.15 16 38 H 0.39 18.61 7.90 -92.71 -0.73 17.88 16 39 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 40 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.11 2.03 7.99 -2.39 -0.02 2.01 16 42 H 0.10 2.16 7.04 -2.39 -0.02 2.14 16 43 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 45 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -69.84 369.78 -0.17 -70.01 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: 0.30 Total: 33.98 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 7.23 Total: 27.15 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -9.62 Total: -126.35 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -0.10 Total: -48.68 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -69.84 -0.17 -70.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113443896.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.392 kcal (2) G-P(sol) polarization free energy of solvation -69.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds