Wall clock time and date at job start Tue Mar 31 2020 17:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34649 * 125.80725 * 2 1 4 4 H 0.97007 * 124.85113 * 359.94897 * 3 2 1 5 5 C 1.36444 * 110.30375 * 179.97438 * 3 2 1 6 6 C 1.34488 * 108.85216 * 359.70714 * 5 3 2 7 7 C 1.36767 * 125.79529 * 179.97438 * 2 1 3 8 8 C 1.47259 * 126.94799 * 0.02928 * 7 2 1 9 9 O 1.21636 * 119.99843 * 359.97438 * 8 7 2 10 10 N 1.34771 * 120.00618 * 179.97438 * 8 7 2 11 11 C 1.46503 * 120.00443 * 179.97438 * 10 8 7 12 12 H 1.09002 * 115.51464 * 350.58842 * 11 10 8 13 13 C 1.52999 * 117.44544 * 205.16600 * 11 10 8 14 14 H 1.09001 * 119.52544 * 5.68798 * 13 11 10 15 15 C 1.54377 * 118.12648 * 160.73121 * 13 11 10 16 16 N 1.48563 * 104.59920 * 87.23046 * 15 13 11 17 17 C 1.46891 * 111.00249 * 200.95980 * 16 15 13 18 18 C 1.50696 * 109.47274 * 170.00136 * 17 16 15 19 19 O 1.21295 * 119.99873 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00261 * 180.02562 * 18 17 16 21 21 C 1.37092 * 120.00188 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00157 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99987 * 179.97438 * 21 20 18 24 24 N 1.31401 * 120.00105 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99636 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47343 * 60.00273 * 25 23 21 27 27 H 1.48507 * 109.46754 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47242 * 299.99579 * 25 23 21 29 29 C 1.48565 * 104.21676 * 320.51624 * 16 15 13 30 30 C 1.53002 * 117.44339 * 136.00508 * 11 10 8 31 31 H 1.09001 * 119.52495 * 355.87427 * 30 11 10 32 32 H 1.09003 * 109.47218 * 270.03428 * 1 2 3 33 33 H 1.08999 * 109.47080 * 30.02464 * 1 2 3 34 34 H 1.08996 * 109.47560 * 150.02692 * 1 2 3 35 35 H 1.07991 * 125.57777 * 179.97438 * 5 3 2 36 36 H 1.07996 * 126.83481 * 180.26936 * 6 5 3 37 37 H 0.97006 * 119.99751 * 0.02562 * 10 8 7 38 38 H 1.09001 * 110.41153 * 206.00927 * 15 13 11 39 39 H 1.08997 * 110.41183 * 328.44827 * 15 13 11 40 40 H 1.08998 * 109.47308 * 290.00119 * 17 16 15 41 41 H 1.09002 * 109.47132 * 49.99802 * 17 16 15 42 42 H 0.97001 * 119.99502 * 359.97438 * 20 18 17 43 43 H 0.97004 * 120.00107 * 180.02562 * 24 23 21 44 44 H 1.08999 * 110.40602 * 158.25894 * 29 16 15 45 45 H 1.08995 * 110.41077 * 280.58700 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0920 0.0000 4 1 1.9735 2.0073 -0.0007 5 6 3.6096 0.7273 0.0006 6 6 3.6881 -0.6153 0.0075 7 6 2.3069 -1.1093 0.0005 8 6 1.8701 -2.5156 0.0005 9 8 0.6837 -2.7839 0.0005 10 7 2.7847 -3.5055 0.0005 11 6 2.3500 -4.9046 0.0011 12 1 1.2840 -5.0650 0.1624 13 6 3.3146 -5.9424 0.5785 14 1 4.2396 -5.6118 1.0509 15 6 2.7406 -7.3095 1.0085 16 7 2.7744 -8.1349 -0.2262 17 6 1.8353 -9.2605 -0.1329 18 6 1.7140 -9.9266 -1.4792 19 8 2.3473 -9.5047 -2.4237 20 7 0.9011 -10.9904 -1.6340 21 6 0.7904 -11.5960 -2.8590 22 1 1.3543 -11.2203 -3.7001 23 6 -0.0473 -12.6930 -3.0184 24 7 -0.7330 -13.1504 -1.9951 25 14 -0.1986 -13.5177 -4.6878 26 1 1.1326 -14.0177 -5.1154 27 1 -1.1474 -14.6562 -4.5932 28 1 -0.7011 -12.5352 -5.6815 29 6 2.3734 -7.1950 -1.3046 30 6 3.0734 -5.8681 -0.9420 31 1 3.8305 -5.4837 -1.6254 32 1 -0.3634 0.0006 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5134 35 1 4.4498 1.4057 0.0003 36 1 4.5888 -1.2111 0.0137 37 1 3.7309 -3.2916 0.0009 38 1 3.3643 -7.7572 1.7823 39 1 1.7160 -7.1971 1.3628 40 1 2.2034 -9.9813 0.5972 41 1 0.8579 -8.8933 0.1802 42 1 0.3944 -11.3275 -0.8787 43 1 -1.3175 -13.9165 -2.1063 44 1 2.7207 -7.5565 -2.2724 45 1 1.2912 -7.0663 -1.3136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114105760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:36 Heat of formation + Delta-G solvation = 18.767000 kcal Electronic energy + Delta-G solvation = -27209.624163 eV Core-core repulsion = 23229.014368 eV Total energy + Delta-G solvation = -3980.609795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.58650 -40.19129 -38.83666 -37.82573 -35.00123 -33.85807 -32.66479 -31.85047 -31.26245 -31.04714 -28.13814 -27.59114 -26.65521 -24.72245 -23.41124 -21.83268 -21.11775 -20.73773 -20.16704 -19.55116 -19.09201 -18.03980 -17.79503 -16.82840 -16.19424 -15.79131 -15.39012 -15.08413 -14.88304 -14.49660 -14.30255 -14.25622 -13.91782 -13.68557 -13.43007 -13.40490 -13.27555 -13.03981 -12.86527 -12.81327 -12.28908 -11.98332 -11.89295 -11.77491 -11.50915 -11.21839 -11.16153 -10.91430 -10.71479 -10.40941 -10.19068 -9.98841 -9.91476 -9.45482 -9.25137 -8.78236 -8.49389 -8.35008 -7.98744 -7.87930 -6.38818 -3.79566 1.46375 2.05874 2.67197 3.11431 3.22683 3.27988 3.28262 3.32761 3.82137 3.92722 4.13050 4.31879 4.46276 4.59828 4.71993 4.78114 4.82503 4.84920 4.96426 5.09735 5.17135 5.27013 5.29207 5.31864 5.45358 5.48257 5.60236 5.68619 5.80007 5.81493 5.84646 5.95378 6.00213 6.14619 6.25374 6.30454 6.36990 6.48506 6.58066 6.71341 7.03969 7.20442 7.31837 7.47201 7.57974 8.08659 8.22458 8.64493 9.20607 9.56701 10.08464 10.78796 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022804 B = 0.001921 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.543084 B =14570.515919 C =15042.768706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.109 3.891 3 N -0.554 5.554 4 H 0.416 0.584 5 C -0.017 4.017 6 C -0.168 4.168 7 C -0.237 4.237 8 C 0.596 3.404 9 O -0.547 6.547 10 N -0.695 5.695 11 C 0.107 3.893 12 H 0.133 0.867 13 C -0.171 4.171 14 H 0.117 0.883 15 C 0.060 3.940 16 N -0.487 5.487 17 C 0.034 3.966 18 C 0.442 3.558 19 O -0.581 6.581 20 N -0.561 5.561 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.066 3.934 30 C -0.163 4.163 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.103 0.897 35 H 0.170 0.830 36 H 0.145 0.855 37 H 0.401 0.599 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.393 0.607 43 H 0.272 0.728 44 H 0.121 0.879 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 27.738 8.918 29.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.009 4.009 3 N -0.149 5.149 4 H 0.253 0.747 5 C -0.144 4.144 6 C -0.192 4.192 7 C -0.247 4.247 8 C 0.385 3.615 9 O -0.425 6.425 10 N -0.343 5.343 11 C 0.000 4.000 12 H 0.150 0.850 13 C -0.191 4.191 14 H 0.135 0.865 15 C -0.068 4.068 16 N -0.211 5.211 17 C -0.098 4.098 18 C 0.228 3.772 19 O -0.466 6.466 20 N -0.198 5.198 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.061 4.061 30 C -0.184 4.184 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.187 0.813 36 H 0.163 0.837 37 H 0.235 0.765 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.701 27.529 8.197 29.494 hybrid contribution -0.609 0.154 -0.070 0.632 sum 6.092 27.683 8.127 29.488 Atomic orbital electron populations 1.20608 0.86844 1.04410 1.03602 1.20376 0.93825 0.85592 1.01138 1.41616 1.06293 1.08458 1.58560 0.74728 1.21726 0.85684 0.96464 1.10569 1.22040 0.95734 0.93745 1.07696 1.20072 0.93323 0.91855 1.19403 1.17302 0.85211 0.83904 0.75069 1.90752 1.16603 1.84305 1.50873 1.45027 1.09650 1.04386 1.75234 1.21771 0.97953 0.77971 1.02256 0.84971 1.23788 1.01390 0.96140 0.97792 0.86532 1.22683 0.99517 0.90653 0.93971 1.65411 1.46718 1.06793 1.02222 1.22095 0.94815 0.94643 0.98258 1.19696 0.84197 0.83831 0.89475 1.90446 1.48626 1.65596 1.41895 1.41838 1.39101 1.26649 1.12180 1.19652 1.24460 1.10243 0.88518 0.87928 1.25265 0.96297 0.97194 0.99189 1.69603 1.28241 1.25861 1.30551 0.85913 0.78169 0.78496 0.81606 1.19896 1.21003 1.19913 1.22835 0.97086 0.87546 0.98645 1.24094 1.03504 0.97992 0.92784 0.86591 0.90314 0.91791 0.87818 0.81304 0.83713 0.76472 0.89576 0.93664 0.89012 0.93177 0.77425 0.91821 0.86093 0.94192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 9.88 36.00 0.36 -0.41 16 2 C 0.11 0.96 7.17 -81.89 -0.59 0.38 16 3 N -0.55 -3.20 5.90 -9.11 -0.05 -3.25 16 4 H 0.42 1.03 8.96 -40.82 -0.37 0.66 16 5 C -0.02 -0.10 11.89 -16.82 -0.20 -0.30 16 6 C -0.17 -1.31 10.56 -37.50 -0.40 -1.70 16 7 C -0.24 -2.50 6.29 -103.35 -0.65 -3.15 16 8 C 0.60 7.72 7.81 -12.60 -0.10 7.62 16 9 O -0.55 -8.79 14.38 5.25 0.08 -8.71 16 10 N -0.69 -7.78 5.56 -54.93 -0.31 -8.09 16 11 C 0.11 1.38 5.98 -67.93 -0.41 0.98 16 12 H 0.13 1.97 7.40 -51.93 -0.38 1.59 16 13 C -0.17 -2.08 7.05 -89.31 -0.63 -2.71 16 14 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.06 0.81 6.30 -2.18 -0.01 0.80 16 16 N -0.49 -8.50 5.33 -231.44 -1.23 -9.74 16 17 C 0.03 0.62 5.55 -4.98 -0.03 0.60 16 18 C 0.44 10.60 7.50 -10.99 -0.08 10.52 16 19 O -0.58 -15.61 13.24 5.54 0.07 -15.54 16 20 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 21 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 22 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 25 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 29 C 0.07 1.17 5.12 -2.20 -0.01 1.16 16 30 C -0.16 -2.28 7.04 -89.33 -0.63 -2.91 16 31 H 0.12 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.10 1.08 6.46 -51.93 -0.34 0.74 16 35 H 0.17 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.15 0.83 7.69 -52.49 -0.40 0.43 16 37 H 0.40 3.42 7.95 -40.82 -0.32 3.09 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.05 0.60 7.82 -51.93 -0.41 0.19 16 40 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.05 0.86 7.88 -51.93 -0.41 0.45 16 42 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.12 2.53 6.05 -51.93 -0.31 2.21 16 45 H 0.04 0.74 7.99 -51.93 -0.42 0.32 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -34.70 375.41 -9.91 -44.61 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -6.15 Total: 14.51 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -3.62 Total: 2.82 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.93 Total: -59.62 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.15 Total: -24.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.70 -9.91 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114105760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.378 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds