Wall clock time and date at job start Tue Mar 31 2020 17:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34649 * 125.80725 * 2 1 4 4 H 0.97007 * 124.85113 * 359.94897 * 3 2 1 5 5 C 1.36444 * 110.30375 * 179.97438 * 3 2 1 6 6 C 1.34488 * 108.85216 * 359.70714 * 5 3 2 7 7 C 1.36767 * 125.79529 * 179.97438 * 2 1 3 8 8 C 1.47259 * 126.94799 * 0.02928 * 7 2 1 9 9 O 1.21636 * 119.99843 * 359.97438 * 8 7 2 10 10 N 1.34771 * 120.00618 * 179.97438 * 8 7 2 11 11 C 1.46503 * 120.00443 * 179.97438 * 10 8 7 12 12 H 1.09002 * 115.51464 * 350.58842 * 11 10 8 13 13 C 1.52999 * 117.44544 * 205.16600 * 11 10 8 14 14 H 1.09001 * 119.52544 * 5.68798 * 13 11 10 15 15 C 1.54377 * 118.12648 * 160.73121 * 13 11 10 16 16 N 1.48563 * 104.59920 * 87.23046 * 15 13 11 17 17 C 1.46891 * 111.00249 * 200.95980 * 16 15 13 18 18 C 1.50696 * 109.47274 * 170.00136 * 17 16 15 19 19 O 1.21295 * 119.99873 * 359.97438 * 18 17 16 20 20 N 1.34779 * 120.00261 * 180.02562 * 18 17 16 21 21 C 1.37092 * 120.00188 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00157 * 359.97438 * 21 20 18 23 23 C 1.38948 * 119.99987 * 179.97438 * 21 20 18 24 24 N 1.31401 * 120.00105 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99636 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47343 * 60.00273 * 25 23 21 27 27 H 1.48507 * 109.46754 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47242 * 299.99579 * 25 23 21 29 29 C 1.48565 * 104.21676 * 320.51624 * 16 15 13 30 30 C 1.53002 * 117.44339 * 136.00508 * 11 10 8 31 31 H 1.09001 * 119.52495 * 355.87427 * 30 11 10 32 32 H 1.09003 * 109.47218 * 270.03428 * 1 2 3 33 33 H 1.08999 * 109.47080 * 30.02464 * 1 2 3 34 34 H 1.08996 * 109.47560 * 150.02692 * 1 2 3 35 35 H 1.07991 * 125.57777 * 179.97438 * 5 3 2 36 36 H 1.07996 * 126.83481 * 180.26936 * 6 5 3 37 37 H 0.97006 * 119.99751 * 0.02562 * 10 8 7 38 38 H 1.09001 * 110.41153 * 206.00927 * 15 13 11 39 39 H 1.08997 * 110.41183 * 328.44827 * 15 13 11 40 40 H 1.08998 * 109.47308 * 290.00119 * 17 16 15 41 41 H 1.09002 * 109.47132 * 49.99802 * 17 16 15 42 42 H 0.97001 * 119.99502 * 359.97438 * 20 18 17 43 43 H 0.97004 * 120.00107 * 180.02562 * 24 23 21 44 44 H 1.08999 * 110.40602 * 158.25894 * 29 16 15 45 45 H 1.08995 * 110.41077 * 280.58700 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0920 0.0000 4 1 1.9735 2.0073 -0.0007 5 6 3.6096 0.7273 0.0006 6 6 3.6881 -0.6153 0.0075 7 6 2.3069 -1.1093 0.0005 8 6 1.8701 -2.5156 0.0005 9 8 0.6837 -2.7839 0.0005 10 7 2.7847 -3.5055 0.0005 11 6 2.3500 -4.9046 0.0011 12 1 1.2840 -5.0650 0.1624 13 6 3.3146 -5.9424 0.5785 14 1 4.2396 -5.6118 1.0509 15 6 2.7406 -7.3095 1.0085 16 7 2.7744 -8.1349 -0.2262 17 6 1.8353 -9.2605 -0.1329 18 6 1.7140 -9.9266 -1.4792 19 8 2.3473 -9.5047 -2.4237 20 7 0.9011 -10.9904 -1.6340 21 6 0.7904 -11.5960 -2.8590 22 1 1.3543 -11.2203 -3.7001 23 6 -0.0473 -12.6930 -3.0184 24 7 -0.7330 -13.1504 -1.9951 25 14 -0.1986 -13.5177 -4.6878 26 1 1.1326 -14.0177 -5.1154 27 1 -1.1474 -14.6562 -4.5932 28 1 -0.7011 -12.5352 -5.6815 29 6 2.3734 -7.1950 -1.3046 30 6 3.0734 -5.8681 -0.9420 31 1 3.8305 -5.4837 -1.6254 32 1 -0.3634 0.0006 1.0277 33 1 -0.3633 0.8898 -0.5142 34 1 -0.3634 -0.8902 -0.5134 35 1 4.4498 1.4057 0.0003 36 1 4.5888 -1.2111 0.0137 37 1 3.7309 -3.2916 0.0009 38 1 3.3643 -7.7572 1.7823 39 1 1.7160 -7.1971 1.3628 40 1 2.2034 -9.9813 0.5972 41 1 0.8579 -8.8933 0.1802 42 1 0.3944 -11.3275 -0.8787 43 1 -1.3175 -13.9165 -2.1063 44 1 2.7207 -7.5565 -2.2724 45 1 1.2912 -7.0663 -1.3136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114105760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:35 Heat of formation + Delta-G solvation = -8.492560 kcal Electronic energy + Delta-G solvation = -27210.806227 eV Core-core repulsion = 23229.014368 eV Total energy + Delta-G solvation = -3981.791858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18129 -41.38380 -40.15358 -39.38591 -36.37690 -35.73796 -33.80673 -33.25694 -32.44961 -31.77491 -29.37725 -29.08868 -27.36914 -26.52163 -24.49323 -22.96999 -22.05556 -21.47321 -21.36095 -20.94208 -20.40680 -19.84150 -18.59686 -17.90973 -17.56903 -17.06635 -16.58318 -16.38288 -16.27446 -16.11561 -15.65860 -15.23963 -15.07162 -14.94026 -14.77705 -14.40600 -14.12904 -14.01566 -13.77522 -13.61787 -13.51523 -13.42749 -13.25527 -13.14531 -12.92220 -12.49884 -12.49054 -12.43857 -12.38505 -12.11596 -11.87779 -11.48130 -11.09697 -10.95187 -10.21862 -10.02369 -9.94029 -9.64018 -9.39565 -9.10470 -8.46909 -5.95719 0.70300 1.39346 1.40994 1.52238 1.55081 1.92191 2.02829 2.28007 2.37522 2.45345 2.77303 2.90487 3.19680 3.33202 3.65151 3.72918 3.85139 3.91726 3.95952 4.11908 4.27453 4.27883 4.28526 4.33985 4.43906 4.52443 4.56190 4.64081 4.68369 4.70964 4.81909 4.97356 4.99647 5.06923 5.13462 5.24699 5.30162 5.40573 5.51065 5.79876 5.80166 5.87431 5.98314 6.07378 6.57382 6.59629 6.70264 7.11838 7.30932 7.54193 8.10023 8.70305 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022804 B = 0.001921 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.543084 B =14570.515919 C =15042.768706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.098 3.902 3 N -0.539 5.539 4 H 0.433 0.567 5 C -0.002 4.002 6 C -0.185 4.185 7 C -0.271 4.271 8 C 0.587 3.413 9 O -0.590 6.590 10 N -0.682 5.682 11 C 0.111 3.889 12 H 0.108 0.892 13 C -0.143 4.143 14 H 0.150 0.850 15 C 0.057 3.943 16 N -0.501 5.501 17 C 0.044 3.956 18 C 0.438 3.562 19 O -0.614 6.614 20 N -0.572 5.572 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 C 0.068 3.932 30 C -0.173 4.173 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.208 0.792 36 H 0.162 0.838 37 H 0.416 0.584 38 H 0.112 0.888 39 H 0.050 0.950 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.082 0.918 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.303 29.706 10.156 32.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.021 4.021 3 N -0.135 5.135 4 H 0.273 0.727 5 C -0.130 4.130 6 C -0.208 4.208 7 C -0.282 4.282 8 C 0.379 3.621 9 O -0.472 6.472 10 N -0.331 5.331 11 C 0.004 3.996 12 H 0.126 0.874 13 C -0.163 4.163 14 H 0.167 0.833 15 C -0.070 4.070 16 N -0.225 5.225 17 C -0.087 4.087 18 C 0.226 3.774 19 O -0.501 6.501 20 N -0.209 5.209 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.198 1.198 29 C -0.060 4.060 30 C -0.193 4.193 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.225 0.775 36 H 0.180 0.820 37 H 0.253 0.747 38 H 0.130 0.870 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.084 0.916 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 8.278 29.531 9.465 32.097 hybrid contribution -1.075 -0.362 -0.440 1.216 sum 7.203 29.169 9.025 31.371 Atomic orbital electron populations 1.20538 0.86777 1.04180 1.03699 1.20479 0.94259 0.86306 1.01102 1.41635 1.06149 1.08675 1.57086 0.72680 1.22347 0.86320 0.96437 1.07869 1.22318 0.94979 0.94887 1.08651 1.20125 0.95422 0.90774 1.21842 1.17819 0.84786 0.85231 0.74261 1.90726 1.18392 1.85070 1.53032 1.44881 1.10325 1.03282 1.74624 1.21494 0.97078 0.79064 1.01964 0.87383 1.23890 1.01808 0.94874 0.95729 0.83282 1.22831 1.00623 0.90893 0.92693 1.65415 1.46222 1.07033 1.03849 1.21998 0.96334 0.95376 0.94988 1.20691 0.82594 0.82900 0.91241 1.90441 1.49559 1.66251 1.43819 1.41908 1.39912 1.27376 1.11679 1.19632 1.25796 1.11764 0.89118 0.90233 1.26064 0.95376 0.97109 1.02820 1.69667 1.28238 1.26117 1.32051 0.84975 0.78373 0.77688 0.77204 1.19607 1.19423 1.19797 1.22574 0.96143 0.89778 0.97462 1.23904 1.04062 0.96888 0.94463 0.85530 0.90058 0.89077 0.90922 0.77506 0.82035 0.74673 0.87012 0.93202 0.86571 0.91609 0.77006 0.91274 0.89959 0.96085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.48 9.88 71.24 0.70 -0.77 16 2 C 0.10 1.65 7.17 41.78 0.30 1.95 16 3 N -0.54 -4.77 5.90 -182.74 -1.08 -5.85 16 4 H 0.43 0.75 8.96 -92.70 -0.83 -0.08 16 5 C 0.00 -0.02 11.89 83.12 0.99 0.97 16 6 C -0.18 -2.45 10.56 23.62 0.25 -2.20 16 7 C -0.27 -5.56 6.29 -19.04 -0.12 -5.68 16 8 C 0.59 15.54 7.81 86.62 0.68 16.21 16 9 O -0.59 -20.09 14.38 -4.14 -0.06 -20.15 16 10 N -0.68 -14.89 5.56 -445.95 -2.48 -17.37 16 11 C 0.11 2.85 5.98 44.99 0.27 3.12 16 12 H 0.11 3.36 7.40 -2.39 -0.02 3.35 16 13 C -0.14 -3.18 7.05 -9.94 -0.07 -3.25 16 14 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 15 C 0.06 1.43 6.30 86.45 0.54 1.97 16 16 N -0.50 -17.28 5.33 -886.16 -4.73 -22.01 16 17 C 0.04 1.64 5.55 85.56 0.47 2.11 16 18 C 0.44 21.67 7.50 87.66 0.66 22.33 16 19 O -0.61 -34.60 13.24 -3.08 -0.04 -34.64 16 20 N -0.57 -30.30 5.29 -306.98 -1.62 -31.92 16 21 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 22 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -50.69 13.05 21.66 0.28 -50.41 16 25 Si 0.99 43.89 29.55 68.60 2.03 45.92 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 29 C 0.07 2.52 5.12 86.44 0.44 2.96 16 30 C -0.17 -4.79 7.04 -9.96 -0.07 -4.86 16 31 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 1.63 6.46 -2.39 -0.02 1.61 16 35 H 0.21 0.04 8.06 -2.92 -0.02 0.02 16 36 H 0.16 1.41 7.69 -2.91 -0.02 1.39 16 37 H 0.42 6.39 7.95 -92.70 -0.74 5.65 16 38 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.05 1.24 7.82 -2.39 -0.02 1.22 16 40 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 41 H 0.07 2.23 7.88 -2.39 -0.02 2.21 16 42 H 0.40 19.97 7.90 -92.71 -0.73 19.24 16 43 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.08 3.68 6.05 -2.39 -0.01 3.66 16 45 H 0.02 0.83 7.99 -2.39 -0.02 0.81 16 Total: -1.00 -79.48 375.41 -2.61 -82.09 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -1.24 Total: 38.35 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 6.33 Total: 15.98 kcal Atomic # 7 Polarization: -117.93 SS G_CDS: -9.62 Total: -127.56 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -0.10 Total: -54.79 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -79.48 -2.61 -82.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114105760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.601 kcal (2) G-P(sol) polarization free energy of solvation -79.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds