Wall clock time and date at job start Tue Mar 31 2020 16:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 119.99765 * 2 1 4 4 H 1.48507 * 109.46943 * 270.00022 * 3 2 1 5 5 H 1.48497 * 109.47560 * 30.00150 * 3 2 1 6 6 H 1.48498 * 109.46828 * 150.00315 * 3 2 1 7 7 C 1.37868 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00732 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00067 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47600 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47137 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00017 * 180.02562 * 12 11 10 14 14 H 1.08994 * 108.89494 * 36.32596 * 13 12 11 15 15 C 1.54215 * 108.92215 * 277.78888 * 13 12 11 16 16 S 1.83824 * 102.86109 * 214.21024 * 15 13 12 17 17 O 1.42096 * 109.81253 * 282.32020 * 16 15 13 18 18 O 1.42100 * 109.81013 * 147.96691 * 16 15 13 19 19 C 1.83827 * 94.23618 * 35.14296 * 16 15 13 20 20 C 1.52380 * 108.92980 * 155.00327 * 13 12 11 21 21 H 1.09010 * 108.92395 * 0.13130 * 20 13 12 22 22 N 1.46901 * 108.92394 * 241.48703 * 20 13 12 23 23 C 1.47015 * 110.99790 * 177.98428 * 22 20 13 24 24 C 1.53098 * 109.25773 * 177.60493 * 23 22 20 25 25 O 1.43014 * 109.25681 * 56.84837 * 24 23 22 26 26 C 1.43016 * 113.74276 * 301.33149 * 25 24 23 27 27 C 1.47012 * 111.00383 * 54.35149 * 22 20 13 28 28 H 0.96999 * 119.99953 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47385 * 59.99685 * 9 7 2 30 30 H 1.09002 * 109.47217 * 300.00083 * 9 7 2 31 31 H 1.08996 * 109.47392 * 59.99899 * 10 9 7 32 32 H 1.09002 * 109.46799 * 300.00211 * 10 9 7 33 33 H 1.08996 * 109.47060 * 59.99557 * 11 10 9 34 34 H 1.08997 * 109.46788 * 300.00018 * 11 10 9 35 35 H 1.00897 * 110.99916 * 56.04454 * 12 11 10 36 36 H 1.08993 * 110.73804 * 332.55504 * 15 13 12 37 37 H 1.08999 * 110.73200 * 95.87180 * 15 13 12 38 38 H 1.09000 * 110.73532 * 206.51578 * 19 16 15 39 39 H 1.08999 * 110.73431 * 83.20029 * 19 16 15 40 40 H 1.08998 * 109.51057 * 297.54012 * 23 22 20 41 41 H 1.09001 * 109.51012 * 57.66922 * 23 22 20 42 42 H 1.08998 * 109.50760 * 296.91456 * 24 23 22 43 43 H 1.09005 * 109.50651 * 176.78273 * 24 23 22 44 44 H 1.09003 * 109.50116 * 298.73979 * 26 25 24 45 45 H 1.08997 * 109.51217 * 178.60286 * 26 25 24 46 46 H 1.08999 * 109.50236 * 302.32903 * 27 22 20 47 47 H 1.09000 * 109.50512 * 62.40825 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 6 5.5516 -2.6366 -0.0022 12 7 6.0412 -4.0215 -0.0027 13 6 7.5097 -4.0607 -0.0021 14 1 7.8844 -3.2400 0.6094 15 6 8.0155 -3.8757 -1.4471 16 16 9.5227 -4.9272 -1.4908 17 8 10.5969 -4.2564 -0.8465 18 8 9.6947 -5.4683 -2.7935 19 6 8.8270 -6.2083 -0.3710 20 6 7.9687 -5.3801 0.6065 21 1 7.0919 -5.9644 0.8863 22 7 8.7579 -5.0992 1.8132 23 6 9.1849 -6.3456 2.4655 24 6 10.0522 -6.0079 3.6811 25 8 9.3152 -5.1591 4.5652 26 6 8.8841 -3.9358 3.9628 27 6 8.0051 -4.2525 2.7500 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6804 0.8888 30 1 3.8746 -0.6801 -0.8911 31 1 3.6579 -3.1498 -0.8924 32 1 3.6585 -3.1510 0.8875 33 1 5.9149 -2.1234 0.8881 34 1 5.9149 -2.1220 -0.8918 35 1 5.6657 -4.5375 -0.7843 36 1 7.2755 -4.2319 -2.1637 37 1 8.2673 -2.8323 -1.6371 38 1 9.6230 -6.7296 0.1607 39 1 8.2078 -6.9120 -0.9272 40 1 8.3079 -6.9063 2.7886 41 1 9.7622 -6.9454 1.7619 42 1 10.9556 -5.4943 3.3523 43 1 10.3239 -6.9268 4.2009 44 1 9.7536 -3.3619 3.6421 45 1 8.3109 -3.3559 4.6862 46 1 7.7211 -3.3244 2.2540 47 1 7.1087 -4.7795 3.0770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116345742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:28 Heat of formation + Delta-G solvation = -92.792060 kcal Electronic energy + Delta-G solvation = -27740.870321 eV Core-core repulsion = 23858.574162 eV Total energy + Delta-G solvation = -3882.296159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39040 -38.32910 -37.27453 -36.25812 -36.01986 -34.06160 -32.54491 -31.77378 -30.94204 -29.33923 -27.40587 -26.55353 -24.88320 -23.59885 -22.26042 -21.30373 -20.54439 -20.00202 -19.15726 -17.68980 -17.06420 -16.79261 -16.49649 -16.44599 -16.20053 -15.44603 -15.32889 -15.26766 -15.10022 -14.72349 -14.45057 -14.17387 -13.99235 -13.64071 -13.21625 -13.07213 -12.83220 -12.58907 -12.49556 -12.34420 -12.27610 -12.11700 -12.00552 -11.81856 -11.62040 -11.39024 -11.07621 -10.96037 -10.90356 -10.84345 -10.63135 -10.02693 -9.96674 -9.84236 -9.66770 -9.24625 -8.78644 -8.61313 -8.58345 -6.08958 -4.07440 -0.26027 2.13272 3.10582 3.22432 3.26129 3.34199 3.36533 3.56892 3.62865 3.89382 3.99299 4.25116 4.40322 4.48312 4.49736 4.56936 4.64808 4.69794 4.86985 4.90957 4.99796 5.05216 5.05911 5.24660 5.26470 5.30123 5.37312 5.39895 5.47501 5.51995 5.59389 5.64049 5.71975 6.00074 6.32580 6.41890 6.49685 6.51271 6.78975 6.84894 6.90735 7.20258 7.23862 7.36170 7.74194 8.48910 8.95940 9.53298 11.04539 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.003093 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.241087 B = 9051.216824 C =10506.194569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.100 4.100 11 C 0.054 3.946 12 N -0.675 5.675 13 C 0.089 3.911 14 H 0.113 0.887 15 C -0.611 4.611 16 S 2.385 3.615 17 O -0.916 6.916 18 O -0.943 6.943 19 C -0.581 4.581 20 C 0.094 3.906 21 H 0.087 0.913 22 N -0.533 5.533 23 C 0.013 3.987 24 C 0.063 3.937 25 O -0.385 6.385 26 C 0.062 3.938 27 C 0.016 3.984 28 H 0.263 0.737 29 H 0.016 0.984 30 H 0.009 0.991 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.345 0.655 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.294 -13.766 2.808 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.050 4.050 10 C -0.138 4.138 11 C -0.075 4.075 12 N -0.306 5.306 13 C -0.024 4.024 14 H 0.131 0.869 15 C -0.742 4.742 16 S 2.567 3.433 17 O -0.913 6.913 18 O -0.939 6.939 19 C -0.711 4.711 20 C -0.016 4.016 21 H 0.105 0.895 22 N -0.259 5.259 23 C -0.115 4.115 24 C -0.014 4.014 25 O -0.304 6.304 26 C -0.015 4.015 27 C -0.112 4.112 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.157 0.843 38 H 0.161 0.839 39 H 0.159 0.841 40 H 0.067 0.933 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 23.351 -13.408 3.079 27.102 hybrid contribution -1.039 0.739 -0.727 1.468 sum 22.312 -12.669 2.352 25.766 Atomic orbital electron populations 1.69918 1.06316 1.26922 1.51072 1.25047 0.94742 0.99207 0.94568 0.86766 0.80326 0.83630 0.78451 1.20364 1.21347 1.19060 1.21122 0.89457 0.94461 1.50858 0.91054 1.19534 0.97252 0.92083 0.96145 1.21452 0.90709 0.99921 1.01694 1.22254 0.97923 0.86958 1.00326 1.60698 1.03948 1.15909 1.50046 1.21854 0.90974 0.98114 0.91422 0.86888 1.31164 1.21375 1.16221 1.05484 1.09346 0.78355 0.79408 0.76230 1.93651 1.48898 1.72270 1.76484 1.93615 1.85918 1.77905 1.36493 1.30614 1.11720 1.14838 1.13912 1.21689 0.95286 0.94227 0.90411 0.89485 1.62336 1.40891 1.16754 1.05873 1.22906 0.99994 0.91676 0.96922 1.22661 0.93921 0.94957 0.89856 1.87997 1.73506 1.31094 1.37768 1.22727 0.97983 0.86424 0.94327 1.22888 0.95918 0.98976 0.93410 0.92706 0.96598 0.97284 0.92918 0.91863 0.91224 0.95068 0.83563 0.84338 0.84263 0.83877 0.84075 0.93260 0.89432 0.91977 0.88450 0.92042 0.88114 0.88703 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 10 C -0.10 -1.79 5.41 -26.73 -0.14 -1.93 16 11 C 0.05 0.73 5.47 -3.83 -0.02 0.71 16 12 N -0.67 -7.11 5.99 -106.40 -0.64 -7.75 16 13 C 0.09 0.78 2.08 -67.40 -0.14 0.64 16 14 H 0.11 1.06 5.38 -51.93 -0.28 0.78 16 15 C -0.61 -4.67 6.64 37.79 0.25 -4.42 16 16 S 2.38 20.39 6.08 -107.50 -0.65 19.73 16 17 O -0.92 -10.89 18.16 -57.66 -1.05 -11.94 16 18 O -0.94 -11.16 18.17 -57.66 -1.05 -12.21 16 19 C -0.58 -3.53 6.82 37.79 0.26 -3.27 16 20 C 0.09 0.74 2.26 -67.40 -0.15 0.58 16 21 H 0.09 0.72 7.80 -51.92 -0.40 0.31 16 22 N -0.53 -4.61 4.55 -225.95 -1.03 -5.63 16 23 C 0.01 0.10 5.38 -3.71 -0.02 0.08 16 24 C 0.06 0.49 7.01 37.21 0.26 0.75 16 25 O -0.39 -3.93 10.83 -35.23 -0.38 -4.31 16 26 C 0.06 0.56 7.01 37.21 0.26 0.82 16 27 C 0.02 0.14 5.26 -3.71 -0.02 0.12 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 30 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.94 8.04 -51.93 -0.42 0.53 16 34 H 0.03 0.41 7.89 -51.93 -0.41 0.00 16 35 H 0.35 3.27 8.18 -39.29 -0.32 2.95 16 36 H 0.14 0.88 7.62 -51.93 -0.40 0.48 16 37 H 0.14 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.14 0.71 5.54 -51.93 -0.29 0.43 16 39 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.49 5.78 -51.93 -0.30 0.19 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.09 0.88 5.85 -51.93 -0.30 0.58 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -36.04 373.02 -10.78 -46.82 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.70 Total: -0.79 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -0.01 Total: -19.39 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: -0.89 Total: -40.23 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -2.48 Total: -28.45 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 20.39 SS G_CDS: -0.65 Total: 19.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.04 -10.78 -46.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116345742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.977 kcal (2) G-P(sol) polarization free energy of solvation -36.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds