Wall clock time and date at job start Tue Mar 31 2020 16:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 119.99765 * 2 1 4 4 H 1.48507 * 109.46943 * 270.00022 * 3 2 1 5 5 H 1.48497 * 109.47560 * 30.00150 * 3 2 1 6 6 H 1.48498 * 109.46828 * 150.00315 * 3 2 1 7 7 C 1.37868 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00732 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00067 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47600 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47137 * 179.97438 * 11 10 9 13 13 C 1.46898 * 111.00017 * 180.02562 * 12 11 10 14 14 H 1.08994 * 108.89494 * 36.32596 * 13 12 11 15 15 C 1.54215 * 108.92215 * 277.78888 * 13 12 11 16 16 S 1.83824 * 102.86109 * 214.21024 * 15 13 12 17 17 O 1.42096 * 109.81253 * 282.32020 * 16 15 13 18 18 O 1.42100 * 109.81013 * 147.96691 * 16 15 13 19 19 C 1.83827 * 94.23618 * 35.14296 * 16 15 13 20 20 C 1.52380 * 108.92980 * 155.00327 * 13 12 11 21 21 H 1.09010 * 108.92395 * 0.13130 * 20 13 12 22 22 N 1.46901 * 108.92394 * 241.48703 * 20 13 12 23 23 C 1.47015 * 110.99790 * 177.98428 * 22 20 13 24 24 C 1.53098 * 109.25773 * 177.60493 * 23 22 20 25 25 O 1.43014 * 109.25681 * 56.84837 * 24 23 22 26 26 C 1.43016 * 113.74276 * 301.33149 * 25 24 23 27 27 C 1.47012 * 111.00383 * 54.35149 * 22 20 13 28 28 H 0.96999 * 119.99953 * 359.97438 * 1 2 3 29 29 H 1.09006 * 109.47385 * 59.99685 * 9 7 2 30 30 H 1.09002 * 109.47217 * 300.00083 * 9 7 2 31 31 H 1.08996 * 109.47392 * 59.99899 * 10 9 7 32 32 H 1.09002 * 109.46799 * 300.00211 * 10 9 7 33 33 H 1.08996 * 109.47060 * 59.99557 * 11 10 9 34 34 H 1.08997 * 109.46788 * 300.00018 * 11 10 9 35 35 H 1.00897 * 110.99916 * 56.04454 * 12 11 10 36 36 H 1.08993 * 110.73804 * 332.55504 * 15 13 12 37 37 H 1.08999 * 110.73200 * 95.87180 * 15 13 12 38 38 H 1.09000 * 110.73532 * 206.51578 * 19 16 15 39 39 H 1.08999 * 110.73431 * 83.20029 * 19 16 15 40 40 H 1.08998 * 109.51057 * 297.54012 * 23 22 20 41 41 H 1.09001 * 109.51012 * 57.66922 * 23 22 20 42 42 H 1.08998 * 109.50760 * 296.91456 * 24 23 22 43 43 H 1.09005 * 109.50651 * 176.78273 * 24 23 22 44 44 H 1.09003 * 109.50116 * 298.73979 * 26 25 24 45 45 H 1.08997 * 109.51217 * 178.60286 * 26 25 24 46 46 H 1.08999 * 109.50236 * 302.32903 * 27 22 20 47 47 H 1.09000 * 109.50512 * 62.40825 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0216 -2.6366 -0.0023 11 6 5.5516 -2.6366 -0.0022 12 7 6.0412 -4.0215 -0.0027 13 6 7.5097 -4.0607 -0.0021 14 1 7.8844 -3.2400 0.6094 15 6 8.0155 -3.8757 -1.4471 16 16 9.5227 -4.9272 -1.4908 17 8 10.5969 -4.2564 -0.8465 18 8 9.6947 -5.4683 -2.7935 19 6 8.8270 -6.2083 -0.3710 20 6 7.9687 -5.3801 0.6065 21 1 7.0919 -5.9644 0.8863 22 7 8.7579 -5.0992 1.8132 23 6 9.1849 -6.3456 2.4655 24 6 10.0522 -6.0079 3.6811 25 8 9.3152 -5.1591 4.5652 26 6 8.8841 -3.9358 3.9628 27 6 8.0051 -4.2525 2.7500 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6804 0.8888 30 1 3.8746 -0.6801 -0.8911 31 1 3.6579 -3.1498 -0.8924 32 1 3.6585 -3.1510 0.8875 33 1 5.9149 -2.1234 0.8881 34 1 5.9149 -2.1220 -0.8918 35 1 5.6657 -4.5375 -0.7843 36 1 7.2755 -4.2319 -2.1637 37 1 8.2673 -2.8323 -1.6371 38 1 9.6230 -6.7296 0.1607 39 1 8.2078 -6.9120 -0.9272 40 1 8.3079 -6.9063 2.7886 41 1 9.7622 -6.9454 1.7619 42 1 10.9556 -5.4943 3.3523 43 1 10.3239 -6.9268 4.2009 44 1 9.7536 -3.3619 3.6421 45 1 8.3109 -3.3559 4.6862 46 1 7.7211 -3.3244 2.2540 47 1 7.1087 -4.7795 3.0770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116345742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:27 Heat of formation + Delta-G solvation = -123.830430 kcal Electronic energy + Delta-G solvation = -27742.216246 eV Core-core repulsion = 23858.574162 eV Total energy + Delta-G solvation = -3883.642084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.05093 -39.07985 -38.06182 -37.05345 -36.98328 -35.52167 -34.04330 -32.61872 -32.00133 -30.19149 -28.30198 -27.74649 -25.68026 -24.49193 -23.53122 -22.19059 -21.63873 -20.96297 -19.84547 -18.94936 -18.25987 -17.75715 -17.27648 -17.15566 -16.90569 -16.43002 -16.29045 -15.98675 -15.88346 -15.77761 -15.65836 -15.20007 -14.87666 -14.73090 -14.42494 -14.04766 -13.73343 -13.64902 -13.40339 -13.33620 -13.22148 -13.08407 -12.94374 -12.75536 -12.62821 -12.47457 -12.25143 -12.09391 -11.83633 -11.73215 -11.58168 -11.46450 -11.41918 -11.27838 -11.16348 -10.75962 -10.63200 -9.47736 -9.42190 -8.29146 -6.33292 -0.91153 1.36050 1.38266 1.49844 1.51316 2.36299 2.46337 2.57952 2.95004 2.98390 3.06625 3.14593 3.36614 3.62470 3.75837 3.90059 3.97259 4.02205 4.14401 4.22975 4.25656 4.32661 4.36178 4.38695 4.45666 4.50924 4.64907 4.70536 4.72528 4.76880 4.81591 4.92506 4.95821 4.96712 5.00046 5.06324 5.13300 5.53051 5.62874 5.67818 5.78948 5.89324 5.99199 6.20694 6.29589 6.40707 6.75938 7.31603 8.87865 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012266 B = 0.003093 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.241087 B = 9051.216824 C =10506.194569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.953 3.047 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.243 1.243 7 C -0.532 4.532 8 H 0.029 0.971 9 C -0.011 4.011 10 C -0.091 4.091 11 C 0.066 3.934 12 N -0.675 5.675 13 C 0.089 3.911 14 H 0.109 0.891 15 C -0.605 4.605 16 S 2.391 3.609 17 O -0.955 6.955 18 O -0.979 6.979 19 C -0.560 4.560 20 C 0.094 3.906 21 H 0.090 0.910 22 N -0.540 5.540 23 C 0.011 3.989 24 C 0.057 3.943 25 O -0.406 6.406 26 C 0.061 3.939 27 C 0.019 3.981 28 H 0.265 0.735 29 H 0.020 0.980 30 H 0.019 0.981 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.353 0.647 36 H 0.156 0.844 37 H 0.146 0.854 38 H 0.159 0.841 39 H 0.171 0.829 40 H 0.047 0.953 41 H 0.110 0.890 42 H 0.061 0.939 43 H 0.116 0.884 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.299 -14.040 2.649 28.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.570 4.570 8 H 0.048 0.952 9 C -0.049 4.049 10 C -0.129 4.129 11 C -0.063 4.063 12 N -0.307 5.307 13 C -0.023 4.023 14 H 0.127 0.873 15 C -0.737 4.737 16 S 2.578 3.422 17 O -0.952 6.952 18 O -0.976 6.976 19 C -0.691 4.691 20 C -0.017 4.017 21 H 0.107 0.893 22 N -0.266 5.266 23 C -0.117 4.117 24 C -0.019 4.019 25 O -0.324 6.324 26 C -0.016 4.016 27 C -0.109 4.109 28 H 0.074 0.926 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.174 0.826 36 H 0.174 0.826 37 H 0.164 0.836 38 H 0.177 0.823 39 H 0.188 0.812 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.079 0.921 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.124 0.876 46 H 0.111 0.889 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 25.403 -13.699 2.897 29.006 hybrid contribution -1.755 0.707 -0.636 1.997 sum 23.647 -12.991 2.261 27.076 Atomic orbital electron populations 1.70085 1.08423 1.28131 1.52883 1.26075 0.95622 1.03706 0.94216 0.85623 0.79575 0.78060 0.79155 1.19224 1.21252 1.16649 1.21542 0.92459 0.92934 1.50084 0.95222 1.19499 0.93584 0.95345 0.96508 1.21256 0.94049 0.96683 1.00927 1.21965 0.94440 0.88877 1.00977 1.60586 1.05188 1.14133 1.50751 1.21855 0.89610 0.98714 0.92095 0.87325 1.31129 1.20857 1.16592 1.05112 1.08935 0.78162 0.79611 0.75540 1.93600 1.51184 1.73519 1.76864 1.93567 1.86663 1.78596 1.38752 1.30545 1.12040 1.13967 1.12593 1.21678 0.95623 0.93911 0.90445 0.89265 1.62377 1.40789 1.17393 1.06022 1.23000 1.00104 0.91317 0.97276 1.22849 0.93665 0.95349 0.90049 1.87967 1.73889 1.31644 1.38944 1.22768 0.98047 0.86311 0.94444 1.22819 0.95515 0.98931 0.93655 0.92579 0.96164 0.96311 0.93219 0.93239 0.90964 0.94103 0.82624 0.82640 0.83617 0.82320 0.81150 0.93512 0.87240 0.92098 0.86616 0.92010 0.87582 0.88859 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 2 C 0.00 0.01 5.47 84.65 0.46 0.47 16 3 Si 0.95 43.45 27.47 68.60 1.88 45.34 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.24 -10.12 6.54 99.48 0.65 -9.46 16 7 C -0.53 -30.19 9.66 25.60 0.25 -29.94 16 8 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 9 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 10 C -0.09 -3.17 5.41 30.59 0.17 -3.00 16 11 C 0.07 1.64 5.47 86.30 0.47 2.11 16 12 N -0.67 -12.56 5.99 -490.53 -2.94 -15.50 16 13 C 0.09 1.35 2.08 45.12 0.09 1.44 16 14 H 0.11 1.80 5.38 -2.39 -0.01 1.79 16 15 C -0.60 -7.69 6.64 72.39 0.48 -7.21 16 16 S 2.39 36.52 6.08 -56.49 -0.34 36.18 16 17 O -0.95 -21.68 18.16 -127.53 -2.32 -24.00 16 18 O -0.98 -21.87 18.17 -127.53 -2.32 -24.19 16 19 C -0.56 -4.96 6.82 72.39 0.49 -4.46 16 20 C 0.09 1.21 2.26 45.12 0.10 1.32 16 21 H 0.09 1.20 7.80 -2.38 -0.02 1.19 16 22 N -0.54 -8.22 4.55 -868.78 -3.95 -12.17 16 23 C 0.01 0.13 5.38 86.31 0.46 0.60 16 24 C 0.06 0.79 7.01 72.02 0.50 1.30 16 25 O -0.41 -7.84 10.83 -148.98 -1.61 -9.45 16 26 C 0.06 1.05 7.01 72.01 0.50 1.55 16 27 C 0.02 0.32 5.26 86.31 0.45 0.77 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.02 0.87 7.20 -2.38 -0.02 0.86 16 30 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.77 8.04 -2.39 -0.02 1.76 16 34 H 0.04 0.95 7.89 -2.39 -0.02 0.93 16 35 H 0.35 5.69 8.18 -89.70 -0.73 4.96 16 36 H 0.16 1.48 7.62 -2.39 -0.02 1.46 16 37 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.16 0.99 5.54 -2.39 -0.01 0.98 16 39 H 0.17 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.11 0.85 5.78 -2.39 -0.01 0.84 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.09 1.62 5.85 -2.39 -0.01 1.60 16 47 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -79.39 373.02 -6.55 -85.94 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.18 Total: 12.78 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 4.57 Total: -35.44 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -6.59 Total: -87.16 kcal Atomic # 8 Polarization: -51.39 SS G_CDS: -6.25 Total: -57.64 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.34 kcal Atomic # 16 Polarization: 36.52 SS G_CDS: -0.34 Total: 36.18 kcal Total: -79.39 -6.55 -85.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116345742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.888 kcal (2) G-P(sol) polarization free energy of solvation -79.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds