Wall clock time and date at job start Tue Mar 31 2020 16:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00404 * 2 1 4 4 H 1.48495 * 109.47378 * 270.00146 * 3 2 1 5 5 H 1.48500 * 109.46920 * 30.00583 * 3 2 1 6 6 H 1.48505 * 109.47225 * 150.00389 * 3 2 1 7 7 C 1.37880 * 119.99463 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00284 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99763 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46727 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46908 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47427 * 180.02562 * 11 10 9 13 13 C 1.46895 * 111.00353 * 179.97438 * 12 11 10 14 14 H 1.09005 * 108.89024 * 44.01812 * 13 12 11 15 15 C 1.54211 * 108.92802 * 285.47956 * 13 12 11 16 16 S 1.84086 * 102.95879 * 214.34459 * 15 13 12 17 17 O 1.42101 * 109.74559 * 282.15661 * 16 15 13 18 18 O 1.42100 * 109.94362 * 147.74960 * 16 15 13 19 19 C 1.83818 * 94.14975 * 34.93046 * 16 15 13 20 20 C 1.52380 * 108.92989 * 162.68485 * 13 12 11 21 21 H 1.08999 * 108.93231 * 241.49289 * 20 13 12 22 22 N 1.46904 * 108.92232 * 0.02562 * 20 13 12 23 23 C 1.47009 * 111.00012 * 195.39864 * 22 20 13 24 24 C 1.53101 * 109.26118 * 177.61178 * 23 22 20 25 25 O 1.43012 * 109.25850 * 56.84653 * 24 23 22 26 26 C 1.43017 * 113.74119 * 301.33876 * 25 24 23 27 27 C 1.47016 * 110.99859 * 71.76715 * 22 20 13 28 28 H 0.97002 * 119.99658 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47113 * 59.99637 * 9 7 2 30 30 H 1.08993 * 109.46920 * 299.99513 * 9 7 2 31 31 H 1.09001 * 109.47473 * 60.00034 * 10 9 7 32 32 H 1.08993 * 109.47423 * 299.99695 * 10 9 7 33 33 H 1.09001 * 109.47037 * 59.99753 * 11 10 9 34 34 H 1.09002 * 109.46995 * 299.99909 * 11 10 9 35 35 H 1.00895 * 111.00166 * 303.95591 * 12 11 10 36 36 H 1.08995 * 110.73623 * 332.55338 * 15 13 12 37 37 H 1.09000 * 110.73207 * 95.68948 * 15 13 12 38 38 H 1.09003 * 110.73540 * 206.61914 * 19 16 15 39 39 H 1.09005 * 110.73518 * 83.49025 * 19 16 15 40 40 H 1.09002 * 109.51027 * 297.54358 * 23 22 20 41 41 H 1.09006 * 109.50809 * 57.67604 * 23 22 20 42 42 H 1.08999 * 109.50187 * 296.91831 * 24 23 22 43 43 H 1.08998 * 109.51171 * 176.78555 * 24 23 22 44 44 H 1.09009 * 109.50305 * 298.73278 * 26 25 24 45 45 H 1.09004 * 109.54520 * 178.62716 * 26 25 24 46 46 H 1.09006 * 109.50912 * 302.32833 * 27 22 20 47 47 H 1.09006 * 109.51130 * 62.40977 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6368 -0.0010 11 6 5.5513 -2.6369 -0.0009 12 7 6.0409 -4.0219 -0.0014 13 6 7.5093 -4.0612 -0.0020 14 1 7.8822 -3.3294 0.7147 15 6 8.0193 -3.6851 -1.4079 16 16 9.5269 -4.7252 -1.5922 17 8 10.6014 -4.1462 -0.8646 18 8 9.6997 -5.0914 -2.9543 19 6 8.8280 -6.1406 -0.6504 20 6 7.9668 -5.4501 0.4265 21 1 8.5499 -5.3632 1.3433 22 7 6.7844 -6.2796 0.6945 23 6 7.1482 -7.4876 1.4491 24 6 5.8819 -8.2909 1.7577 25 8 5.2090 -8.5992 0.5340 26 6 4.8395 -7.4456 -0.2264 27 6 6.0952 -6.6338 -0.5549 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6806 0.8887 30 1 3.8744 -0.6803 -0.8911 31 1 3.6576 -3.1508 -0.8907 32 1 3.6583 -3.1503 0.8892 33 1 5.9146 -2.1230 0.8890 34 1 5.9147 -2.1232 -0.8910 35 1 5.6654 -4.5385 0.7797 36 1 7.2813 -3.9423 -2.1677 37 1 8.2685 -2.6251 -1.4572 38 1 9.6226 -6.7284 -0.1908 39 1 8.2109 -6.7663 -1.2953 40 1 7.8297 -8.0965 0.8550 41 1 7.6341 -7.2014 2.3820 42 1 5.2239 -7.7018 2.3964 43 1 6.1526 -9.2157 2.2672 44 1 4.1511 -6.8319 0.3548 45 1 4.3558 -7.7584 -1.1517 46 1 5.8123 -5.7243 -1.0851 47 1 6.7601 -7.2284 -1.1815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116345743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:31 Heat of formation + Delta-G solvation = -78.786411 kcal Electronic energy + Delta-G solvation = -28113.396737 eV Core-core repulsion = 24231.707909 eV Total energy + Delta-G solvation = -3881.688828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58057 -38.19140 -37.35185 -36.32509 -35.78815 -33.90676 -32.52404 -31.41550 -31.03134 -29.28381 -27.57880 -26.41827 -24.56989 -24.21259 -22.07525 -21.12936 -20.28145 -19.85480 -19.18654 -17.42913 -17.22059 -16.67903 -16.57067 -16.12652 -16.07354 -15.90655 -15.52132 -15.25910 -14.81759 -14.72984 -14.29482 -14.19141 -14.16304 -13.48128 -13.25595 -12.97446 -12.62146 -12.55346 -12.52341 -12.36982 -12.25776 -12.01038 -11.85533 -11.61161 -11.47817 -11.38003 -11.12156 -11.01552 -10.90993 -10.74752 -10.52635 -9.99353 -9.92694 -9.77348 -9.62174 -9.20339 -8.86064 -8.55688 -8.29795 -6.05994 -4.03917 -0.30243 2.09618 3.13809 3.28564 3.30416 3.36305 3.38946 3.53600 3.68754 3.88491 4.14129 4.27018 4.36461 4.43199 4.46030 4.63085 4.71800 4.77839 4.87732 4.93222 4.94700 5.11626 5.26682 5.28022 5.28760 5.38041 5.46950 5.52791 5.56193 5.59560 5.71305 5.81453 5.90110 6.11107 6.36818 6.50415 6.52555 6.57093 6.87426 6.94761 7.07328 7.29493 7.40035 7.55551 7.78091 8.52520 8.99402 9.56690 11.07567 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.003459 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.430216 B = 8094.001314 C = 9958.379924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.097 4.097 11 C 0.049 3.951 12 N -0.669 5.669 13 C 0.095 3.905 14 H 0.069 0.931 15 C -0.566 4.566 16 S 2.380 3.620 17 O -0.932 6.932 18 O -0.936 6.936 19 C -0.626 4.626 20 C 0.091 3.909 21 H 0.105 0.895 22 N -0.512 5.512 23 C 0.013 3.987 24 C 0.064 3.936 25 O -0.389 6.389 26 C 0.063 3.937 27 C -0.005 4.005 28 H 0.263 0.737 29 H 0.013 0.987 30 H 0.010 0.990 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.365 0.635 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.148 0.852 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.134 0.866 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.103 -15.900 1.659 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.135 4.135 11 C -0.079 4.079 12 N -0.307 5.307 13 C -0.018 4.018 14 H 0.087 0.913 15 C -0.697 4.697 16 S 2.562 3.438 17 O -0.929 6.929 18 O -0.933 6.933 19 C -0.756 4.756 20 C -0.020 4.020 21 H 0.123 0.877 22 N -0.237 5.237 23 C -0.115 4.115 24 C -0.013 4.013 25 O -0.307 6.307 26 C -0.014 4.014 27 C -0.132 4.132 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.029 0.971 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.190 0.810 36 H 0.168 0.832 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.166 0.834 40 H 0.065 0.935 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.117 0.883 46 H 0.151 0.849 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 19.420 -15.630 0.786 24.941 hybrid contribution 0.453 0.898 0.907 1.354 sum 19.873 -14.732 1.693 24.796 Atomic orbital electron populations 1.69915 1.06309 1.26857 1.51223 1.25040 0.94718 0.99162 0.94625 0.86774 0.80289 0.83687 0.78465 1.20323 1.21440 1.19141 1.21137 0.89499 0.94420 1.50663 0.91041 1.19538 0.97181 0.92296 0.96066 1.21412 0.90911 0.99661 1.01549 1.22285 0.97775 0.87838 1.00021 1.60861 1.03532 1.14829 1.51469 1.21461 0.92900 0.94234 0.93162 0.91281 1.30634 1.19167 1.14333 1.05567 1.09369 0.78481 0.79853 0.76059 1.93638 1.49876 1.75488 1.73914 1.93627 1.85962 1.82040 1.31641 1.31156 1.12147 1.18529 1.13748 1.22036 0.90423 0.92103 0.97423 0.87697 1.62216 1.22495 1.17946 1.21028 1.22869 0.98234 0.91353 0.99075 1.22623 0.92328 0.99388 0.86965 1.87982 1.77102 1.31650 1.34010 1.22721 0.95482 0.86753 0.96438 1.23443 0.95729 1.02831 0.91242 0.92759 0.96908 0.97127 0.91987 0.92981 0.95524 0.91455 0.80982 0.83233 0.84508 0.84628 0.83414 0.93544 0.89661 0.92038 0.88721 0.91579 0.88306 0.84887 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.51 9.66 -34.43 -0.33 -14.84 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 10 C -0.10 -1.75 5.41 -26.73 -0.14 -1.89 16 11 C 0.05 0.68 5.47 -3.82 -0.02 0.66 16 12 N -0.67 -7.08 3.48 -106.39 -0.37 -7.45 16 13 C 0.10 0.80 2.73 -67.40 -0.18 0.62 16 14 H 0.07 0.58 7.93 -51.93 -0.41 0.17 16 15 C -0.57 -4.39 6.27 37.79 0.24 -4.15 16 16 S 2.38 19.60 6.10 -107.50 -0.66 18.94 16 17 O -0.93 -10.60 18.16 -57.66 -1.05 -11.64 16 18 O -0.94 -11.13 18.17 -57.66 -1.05 -12.17 16 19 C -0.63 -3.85 5.94 37.79 0.22 -3.62 16 20 C 0.09 0.64 2.62 -67.40 -0.18 0.46 16 21 H 0.10 0.62 7.93 -51.93 -0.41 0.20 16 22 N -0.51 -3.96 3.00 -225.95 -0.68 -4.64 16 23 C 0.01 0.09 5.43 -3.71 -0.02 0.07 16 24 C 0.06 0.50 7.01 37.21 0.26 0.76 16 25 O -0.39 -4.00 10.83 -35.23 -0.38 -4.38 16 26 C 0.06 0.59 7.01 37.20 0.26 0.85 16 27 C -0.01 -0.04 4.39 -3.71 -0.02 -0.06 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 30 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.07 0.92 7.58 -51.93 -0.39 0.52 16 35 H 0.37 3.94 6.74 -39.29 -0.26 3.68 16 36 H 0.15 1.13 8.06 -51.93 -0.42 0.71 16 37 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.14 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.15 0.89 5.10 -51.93 -0.27 0.63 16 40 H 0.05 0.32 7.57 -51.93 -0.39 -0.07 16 41 H 0.09 0.48 8.04 -51.93 -0.42 0.06 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.13 1.21 5.79 -51.93 -0.30 0.91 16 47 H 0.04 0.34 5.70 -51.93 -0.30 0.04 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -35.67 368.08 -10.38 -46.05 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.73 Total: -0.39 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -0.12 Total: -19.77 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: -0.28 Total: -38.99 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -2.48 Total: -28.20 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 19.60 SS G_CDS: -0.66 Total: 18.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.67 -10.38 -46.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116345743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.734 kcal (2) G-P(sol) polarization free energy of solvation -35.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds