Wall clock time and date at job start Tue Mar 31 2020 16:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00404 * 2 1 4 4 H 1.48495 * 109.47378 * 270.00146 * 3 2 1 5 5 H 1.48500 * 109.46920 * 30.00583 * 3 2 1 6 6 H 1.48505 * 109.47225 * 150.00389 * 3 2 1 7 7 C 1.37880 * 119.99463 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00284 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99763 * 179.97438 * 7 2 1 10 10 C 1.52998 * 109.46727 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46908 * 180.02562 * 10 9 7 12 12 N 1.46900 * 109.47427 * 180.02562 * 11 10 9 13 13 C 1.46895 * 111.00353 * 179.97438 * 12 11 10 14 14 H 1.09005 * 108.89024 * 44.01812 * 13 12 11 15 15 C 1.54211 * 108.92802 * 285.47956 * 13 12 11 16 16 S 1.84086 * 102.95879 * 214.34459 * 15 13 12 17 17 O 1.42101 * 109.74559 * 282.15661 * 16 15 13 18 18 O 1.42100 * 109.94362 * 147.74960 * 16 15 13 19 19 C 1.83818 * 94.14975 * 34.93046 * 16 15 13 20 20 C 1.52380 * 108.92989 * 162.68485 * 13 12 11 21 21 H 1.08999 * 108.93231 * 241.49289 * 20 13 12 22 22 N 1.46904 * 108.92232 * 0.02562 * 20 13 12 23 23 C 1.47009 * 111.00012 * 195.39864 * 22 20 13 24 24 C 1.53101 * 109.26118 * 177.61178 * 23 22 20 25 25 O 1.43012 * 109.25850 * 56.84653 * 24 23 22 26 26 C 1.43017 * 113.74119 * 301.33876 * 25 24 23 27 27 C 1.47016 * 110.99859 * 71.76715 * 22 20 13 28 28 H 0.97002 * 119.99658 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47113 * 59.99637 * 9 7 2 30 30 H 1.08993 * 109.46920 * 299.99513 * 9 7 2 31 31 H 1.09001 * 109.47473 * 60.00034 * 10 9 7 32 32 H 1.08993 * 109.47423 * 299.99695 * 10 9 7 33 33 H 1.09001 * 109.47037 * 59.99753 * 11 10 9 34 34 H 1.09002 * 109.46995 * 299.99909 * 11 10 9 35 35 H 1.00895 * 111.00166 * 303.95591 * 12 11 10 36 36 H 1.08995 * 110.73623 * 332.55338 * 15 13 12 37 37 H 1.09000 * 110.73207 * 95.68948 * 15 13 12 38 38 H 1.09003 * 110.73540 * 206.61914 * 19 16 15 39 39 H 1.09005 * 110.73518 * 83.49025 * 19 16 15 40 40 H 1.09002 * 109.51027 * 297.54358 * 23 22 20 41 41 H 1.09006 * 109.50809 * 57.67604 * 23 22 20 42 42 H 1.08999 * 109.50187 * 296.91831 * 24 23 22 43 43 H 1.08998 * 109.51171 * 176.78555 * 24 23 22 44 44 H 1.09009 * 109.50305 * 298.73278 * 26 25 24 45 45 H 1.09004 * 109.54520 * 178.62716 * 26 25 24 46 46 H 1.09006 * 109.50912 * 302.32833 * 27 22 20 47 47 H 1.09006 * 109.51130 * 62.40977 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6368 -0.0010 11 6 5.5513 -2.6369 -0.0009 12 7 6.0409 -4.0219 -0.0014 13 6 7.5093 -4.0612 -0.0020 14 1 7.8822 -3.3294 0.7147 15 6 8.0193 -3.6851 -1.4079 16 16 9.5269 -4.7252 -1.5922 17 8 10.6014 -4.1462 -0.8646 18 8 9.6997 -5.0914 -2.9543 19 6 8.8280 -6.1406 -0.6504 20 6 7.9668 -5.4501 0.4265 21 1 8.5499 -5.3632 1.3433 22 7 6.7844 -6.2796 0.6945 23 6 7.1482 -7.4876 1.4491 24 6 5.8819 -8.2909 1.7577 25 8 5.2090 -8.5992 0.5340 26 6 4.8395 -7.4456 -0.2264 27 6 6.0952 -6.6338 -0.5549 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6806 0.8887 30 1 3.8744 -0.6803 -0.8911 31 1 3.6576 -3.1508 -0.8907 32 1 3.6583 -3.1503 0.8892 33 1 5.9146 -2.1230 0.8890 34 1 5.9147 -2.1232 -0.8910 35 1 5.6654 -4.5385 0.7797 36 1 7.2813 -3.9423 -2.1677 37 1 8.2685 -2.6251 -1.4572 38 1 9.6226 -6.7284 -0.1908 39 1 8.2109 -6.7663 -1.2953 40 1 7.8297 -8.0965 0.8550 41 1 7.6341 -7.2014 2.3820 42 1 5.2239 -7.7018 2.3964 43 1 6.1526 -9.2157 2.2672 44 1 4.1511 -6.8319 0.3548 45 1 4.3558 -7.7584 -1.1517 46 1 5.8123 -5.7243 -1.0851 47 1 6.7601 -7.2284 -1.1815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116345743.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:30 Heat of formation + Delta-G solvation = -107.198975 kcal Electronic energy + Delta-G solvation = -28114.628798 eV Core-core repulsion = 24231.707909 eV Total energy + Delta-G solvation = -3882.920890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.21854 -38.92841 -38.12859 -37.10599 -36.85154 -35.33128 -33.97224 -32.35018 -32.01278 -30.08601 -28.56324 -27.54367 -25.38597 -25.01139 -23.43567 -21.97356 -21.55640 -20.59983 -19.88048 -18.88362 -18.11585 -17.77750 -17.25675 -16.85838 -16.80282 -16.59138 -16.42904 -16.17369 -15.91317 -15.66178 -15.45665 -15.16474 -15.00378 -14.70090 -14.30262 -13.97377 -13.70219 -13.60990 -13.40384 -13.30858 -13.17017 -13.09820 -12.77030 -12.66691 -12.45424 -12.32046 -12.12400 -12.03365 -11.87727 -11.75118 -11.62344 -11.37322 -11.34203 -11.18853 -11.17234 -10.73973 -10.61873 -9.49551 -9.09965 -8.27182 -6.30769 -0.94835 1.37245 1.38843 1.48711 1.50510 2.37796 2.52323 2.67369 2.91688 3.05176 3.08723 3.20873 3.50951 3.67603 3.71525 3.87340 4.05233 4.08297 4.15352 4.29995 4.31890 4.34753 4.38776 4.45492 4.59148 4.67163 4.74137 4.76654 4.79496 4.87296 4.94651 4.96913 5.00043 5.05900 5.14903 5.18480 5.26087 5.57767 5.68042 5.70802 5.82433 5.95510 6.18541 6.28933 6.33420 6.66656 6.78430 7.33939 8.89859 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.003459 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.430216 B = 8094.001314 C = 9958.379924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.530 4.530 8 H 0.030 0.970 9 C -0.012 4.012 10 C -0.088 4.088 11 C 0.062 3.938 12 N -0.666 5.666 13 C 0.092 3.908 14 H 0.078 0.922 15 C -0.563 4.563 16 S 2.395 3.605 17 O -0.964 6.964 18 O -0.977 6.977 19 C -0.606 4.606 20 C 0.090 3.910 21 H 0.126 0.874 22 N -0.519 5.519 23 C 0.015 3.985 24 C 0.058 3.942 25 O -0.408 6.408 26 C 0.061 3.939 27 C -0.002 4.002 28 H 0.265 0.735 29 H 0.017 0.983 30 H 0.018 0.982 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.365 0.635 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.052 0.948 41 H 0.104 0.896 42 H 0.054 0.946 43 H 0.111 0.889 44 H 0.052 0.948 45 H 0.101 0.899 46 H 0.127 0.873 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.726 -15.811 2.350 26.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.168 1.168 7 C -0.568 4.568 8 H 0.048 0.952 9 C -0.050 4.050 10 C -0.126 4.126 11 C -0.067 4.067 12 N -0.303 5.303 13 C -0.020 4.020 14 H 0.096 0.904 15 C -0.695 4.695 16 S 2.582 3.418 17 O -0.961 6.961 18 O -0.974 6.974 19 C -0.738 4.738 20 C -0.020 4.020 21 H 0.144 0.856 22 N -0.243 5.243 23 C -0.113 4.113 24 C -0.019 4.019 25 O -0.327 6.327 26 C -0.016 4.016 27 C -0.129 4.129 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.092 0.908 35 H 0.190 0.810 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.070 0.930 41 H 0.122 0.878 42 H 0.073 0.927 43 H 0.129 0.871 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.144 0.856 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.086 -15.549 1.465 27.051 hybrid contribution -0.482 0.737 0.738 1.149 sum 21.604 -14.812 2.203 26.287 Atomic orbital electron populations 1.70081 1.08398 1.28059 1.52995 1.26053 0.95590 1.03615 0.94272 0.85632 0.79509 0.78173 0.79135 1.19242 1.21286 1.16814 1.21548 0.92440 0.92916 1.49908 0.95177 1.19505 0.93585 0.95536 0.96343 1.21216 0.94262 0.96384 1.00745 1.22009 0.94333 0.89823 1.00548 1.60778 1.05168 1.12727 1.51655 1.21594 0.91176 0.95611 0.93662 0.90410 1.30614 1.18559 1.14941 1.05387 1.08733 0.78066 0.80089 0.74930 1.93592 1.51768 1.76604 1.74162 1.93572 1.86708 1.82827 1.34253 1.31047 1.12444 1.17315 1.12998 1.22112 0.90376 0.91109 0.98442 0.85615 1.62182 1.22876 1.18605 1.20660 1.22904 0.97724 0.90831 0.99840 1.22801 0.92596 1.00401 0.86087 1.87954 1.77575 1.32210 1.34974 1.22721 0.95891 0.86641 0.96320 1.23347 0.95528 1.02358 0.91702 0.92629 0.96456 0.96334 0.92959 0.93776 0.95142 0.90796 0.80956 0.82957 0.83542 0.82191 0.82939 0.92970 0.87790 0.92730 0.87128 0.92979 0.88066 0.85571 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 2 C 0.00 0.06 5.47 84.66 0.46 0.52 16 3 Si 0.95 43.78 27.47 68.60 1.88 45.66 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 7 C -0.53 -30.22 9.66 25.60 0.25 -29.97 16 8 H 0.03 1.90 7.99 -2.91 -0.02 1.87 16 9 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 10 C -0.09 -3.11 5.41 30.59 0.17 -2.94 16 11 C 0.06 1.57 5.47 86.30 0.47 2.04 16 12 N -0.67 -12.66 3.48 -490.51 -1.71 -14.37 16 13 C 0.09 1.28 2.73 45.12 0.12 1.41 16 14 H 0.08 1.02 7.93 -2.38 -0.02 1.00 16 15 C -0.56 -7.45 6.27 72.39 0.45 -7.00 16 16 S 2.40 35.22 6.10 -56.49 -0.34 34.88 16 17 O -0.96 -20.32 18.16 -127.53 -2.32 -22.64 16 18 O -0.98 -22.39 18.17 -127.53 -2.32 -24.70 16 19 C -0.61 -5.54 5.94 72.39 0.43 -5.11 16 20 C 0.09 0.96 2.62 45.12 0.12 1.08 16 21 H 0.13 0.92 7.93 -2.39 -0.02 0.90 16 22 N -0.52 -6.67 3.00 -868.77 -2.61 -9.28 16 23 C 0.01 0.16 5.43 86.32 0.47 0.63 16 24 C 0.06 0.80 7.01 72.02 0.50 1.31 16 25 O -0.41 -8.01 10.83 -148.98 -1.61 -9.63 16 26 C 0.06 1.11 7.01 72.01 0.50 1.61 16 27 C 0.00 -0.03 4.39 86.31 0.38 0.35 16 28 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.02 0.75 7.20 -2.39 -0.02 0.74 16 30 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 0.76 8.07 -2.39 -0.02 0.74 16 34 H 0.07 1.80 7.58 -2.39 -0.02 1.78 16 35 H 0.37 7.18 6.74 -89.70 -0.60 6.58 16 36 H 0.15 2.00 8.06 -2.39 -0.02 1.98 16 37 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.16 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.15 1.38 5.10 -2.38 -0.01 1.37 16 40 H 0.05 0.53 7.57 -2.39 -0.02 0.51 16 41 H 0.10 0.76 8.04 -2.38 -0.02 0.74 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.13 2.10 5.79 -2.38 -0.01 2.09 16 47 H 0.05 0.68 5.70 -2.38 -0.01 0.67 16 Total: -1.00 -78.26 368.08 -3.97 -82.23 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.30 Total: 13.98 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 4.45 Total: -36.48 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -4.02 Total: -83.30 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -6.25 Total: -56.97 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Atomic # 16 Polarization: 35.22 SS G_CDS: -0.34 Total: 34.88 kcal Total: -78.26 -3.97 -82.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116345743.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.972 kcal (2) G-P(sol) polarization free energy of solvation -78.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds