Wall clock time and date at job start Tue Mar 31 2020 16:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00405 * 2 1 4 4 H 1.48495 * 109.47052 * 269.99842 * 3 2 1 5 5 H 1.48506 * 109.46997 * 29.99659 * 3 2 1 6 6 H 1.48493 * 109.47306 * 149.99528 * 3 2 1 7 7 C 1.37880 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00037 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47137 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46864 * 179.97438 * 11 10 9 13 13 C 1.46909 * 110.99752 * 180.02562 * 12 11 10 14 14 H 1.08998 * 108.89007 * 325.69934 * 13 12 11 15 15 C 1.54204 * 108.92473 * 84.37286 * 13 12 11 16 16 S 1.83825 * 102.86069 * 145.65421 * 15 13 12 17 17 O 1.42105 * 109.81071 * 77.68427 * 16 15 13 18 18 O 1.42094 * 109.81105 * 211.99713 * 16 15 13 19 19 C 1.83822 * 94.23506 * 324.85800 * 16 15 13 20 20 C 1.52384 * 108.92282 * 207.03513 * 13 12 11 21 21 H 1.09004 * 108.92677 * 118.65043 * 20 13 12 22 22 N 1.46896 * 108.92966 * 0.13334 * 20 13 12 23 23 C 1.47016 * 110.99846 * 290.04604 * 22 20 13 24 24 C 1.53101 * 109.25832 * 177.60650 * 23 22 20 25 25 O 1.43017 * 109.25625 * 56.84625 * 24 23 22 26 26 C 1.43014 * 113.74175 * 301.33380 * 25 24 23 27 27 C 1.47008 * 110.99965 * 166.41255 * 22 20 13 28 28 H 0.97007 * 119.99365 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47337 * 60.00424 * 9 7 2 30 30 H 1.08999 * 109.47151 * 299.99965 * 9 7 2 31 31 H 1.08996 * 109.47495 * 59.99988 * 10 9 7 32 32 H 1.08999 * 109.47155 * 299.99951 * 10 9 7 33 33 H 1.08995 * 109.46750 * 60.00186 * 11 10 9 34 34 H 1.08999 * 109.47077 * 300.00023 * 11 10 9 35 35 H 1.00895 * 111.00422 * 56.04953 * 12 11 10 36 36 H 1.09004 * 110.73047 * 263.99423 * 15 13 12 37 37 H 1.08997 * 110.73625 * 27.30992 * 15 13 12 38 38 H 1.08999 * 110.73695 * 153.48374 * 19 16 15 39 39 H 1.09002 * 110.73646 * 276.61735 * 19 16 15 40 40 H 1.08997 * 109.50956 * 297.53788 * 23 22 20 41 41 H 1.09004 * 109.50657 * 57.67206 * 23 22 20 42 42 H 1.08999 * 109.50542 * 296.91725 * 24 23 22 43 43 H 1.09000 * 109.54603 * 176.80462 * 24 23 22 44 44 H 1.09000 * 109.50310 * 298.73342 * 26 25 24 45 45 H 1.08998 * 109.54479 * 178.62994 * 26 25 24 46 46 H 1.09001 * 109.50889 * 302.32512 * 27 22 20 47 47 H 1.08998 * 109.50817 * 62.45547 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6621 0.0018 11 6 1.4800 -4.9871 0.0025 12 7 2.4346 -6.1037 0.0031 13 6 1.7342 -7.3951 0.0031 14 1 0.8168 -7.2990 0.5839 15 6 1.3706 -7.7668 -1.4486 16 16 1.5325 -9.5979 -1.4549 17 8 0.3943 -10.1842 -0.8382 18 8 1.9587 -10.0393 -2.7365 19 6 2.9513 -9.6127 -0.2861 20 6 2.6270 -8.4414 0.6589 21 1 2.1238 -8.8310 1.5439 22 7 3.8843 -7.8039 1.0718 23 6 4.6996 -7.4412 -0.0965 24 6 5.9694 -6.7280 0.3756 25 8 6.6752 -7.5750 1.2866 26 6 5.9108 -7.9472 2.4365 27 6 4.6404 -8.6728 1.9853 28 1 -0.4849 0.8402 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6239 -2.5566 0.8903 31 1 2.8710 -3.6040 0.8922 32 1 2.8724 -3.6048 -0.8877 33 1 0.8538 -5.0454 -0.8877 34 1 0.8529 -5.0442 0.8922 35 1 3.0694 -6.0363 0.7844 36 1 0.3475 -7.4691 -1.6785 37 1 2.0720 -7.3149 -2.1499 38 1 2.9886 -10.5531 0.2637 39 1 3.8886 -9.4390 -0.8147 40 1 4.9714 -8.3432 -0.6449 41 1 4.1294 -6.7773 -0.7464 42 1 5.6997 -5.7986 0.8773 43 1 6.6043 -6.5074 -0.4826 44 1 5.6394 -7.0533 2.9981 45 1 6.5026 -8.6087 3.0692 46 1 4.0271 -8.9079 2.8551 47 1 4.9111 -9.5945 1.4702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116345744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:35 Heat of formation + Delta-G solvation = -79.830556 kcal Electronic energy + Delta-G solvation = -28074.003635 eV Core-core repulsion = 24192.269529 eV Total energy + Delta-G solvation = -3881.734106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65073 -38.16608 -37.30910 -36.28386 -35.66482 -33.85626 -32.57222 -31.45105 -30.80546 -29.17461 -27.44619 -26.14482 -24.55990 -24.21155 -22.28834 -21.14047 -20.32015 -19.84039 -19.15758 -17.39195 -17.17159 -16.56768 -16.28067 -16.11968 -16.00059 -15.86289 -15.54702 -15.25781 -14.74817 -14.68122 -14.43113 -14.26813 -14.04941 -13.39760 -13.16550 -13.02394 -12.54094 -12.48119 -12.33220 -12.30770 -12.04297 -12.00228 -11.71281 -11.56502 -11.41125 -11.29037 -11.09908 -10.92341 -10.76430 -10.61196 -10.51955 -10.46803 -9.95410 -9.73184 -9.37439 -9.08982 -8.88600 -8.36445 -8.24008 -6.01597 -4.03770 -0.25810 2.14366 3.15466 3.30839 3.32537 3.37251 3.40333 3.57795 3.67243 3.92774 4.17190 4.30535 4.40121 4.44434 4.51347 4.62774 4.73544 4.82829 4.88322 4.93024 4.97280 5.12624 5.27561 5.31837 5.34543 5.41260 5.45729 5.53241 5.61586 5.70737 5.77220 5.84270 5.93986 6.26710 6.40053 6.53495 6.66070 6.69567 6.92794 7.09821 7.19729 7.63620 7.66178 7.80506 7.98491 8.41408 9.03463 9.60488 11.09792 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.003233 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.859537 B = 8657.409029 C =10400.306666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.052 3.948 12 N -0.674 5.674 13 C 0.093 3.907 14 H 0.074 0.926 15 C -0.564 4.564 16 S 2.380 3.620 17 O -0.932 6.932 18 O -0.937 6.937 19 C -0.625 4.625 20 C 0.087 3.913 21 H 0.106 0.894 22 N -0.516 5.516 23 C -0.013 4.013 24 C 0.063 3.937 25 O -0.388 6.388 26 C 0.064 3.936 27 C 0.014 3.986 28 H 0.260 0.740 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.366 0.634 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.045 0.955 41 H 0.137 0.863 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.341 -21.630 2.517 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.076 4.076 12 N -0.314 5.314 13 C -0.020 4.020 14 H 0.092 0.908 15 C -0.695 4.695 16 S 2.563 3.437 17 O -0.929 6.929 18 O -0.934 6.934 19 C -0.755 4.755 20 C -0.024 4.024 21 H 0.124 0.876 22 N -0.241 5.241 23 C -0.140 4.140 24 C -0.014 4.014 25 O -0.307 6.307 26 C -0.014 4.014 27 C -0.114 4.114 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.032 0.968 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.193 0.807 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.063 0.937 41 H 0.155 0.845 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.104 0.896 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.859 -21.871 1.630 23.298 hybrid contribution 0.355 0.851 0.954 1.327 sum 8.214 -21.020 2.585 22.716 Atomic orbital electron populations 1.69965 1.06073 1.26575 1.50945 1.25025 0.94832 0.99262 0.95360 0.86605 0.79842 0.83504 0.78108 1.20666 1.21273 1.19885 1.21240 0.93015 0.91042 1.50443 0.92699 1.19059 0.94013 0.91393 0.97087 1.21595 0.99168 0.92877 1.00655 1.22267 0.94363 0.90936 1.00048 1.61061 1.19523 0.99361 1.51428 1.21487 0.96563 0.92267 0.91686 0.90759 1.30616 1.11590 1.22588 1.04738 1.09354 0.77771 0.80031 0.76585 1.93640 1.46545 1.74977 1.77731 1.93619 1.82485 1.79891 1.37416 1.31084 1.20728 1.07187 1.16498 1.22049 0.92631 0.89933 0.97772 0.87557 1.62187 1.04366 1.40977 1.16534 1.23565 0.95856 1.01229 0.93379 1.22726 0.92290 0.93062 0.93342 1.87982 1.40291 1.68767 1.33660 1.22633 0.91258 0.99282 0.88192 1.22857 0.96065 0.95212 0.97302 0.93031 0.96639 0.96846 0.93637 0.92609 0.91523 0.95425 0.80695 0.84440 0.83233 0.84605 0.83543 0.93743 0.84532 0.91647 0.88234 0.92026 0.88646 0.89573 0.93390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.00 5.41 -26.73 -0.14 -2.15 16 11 C 0.05 0.79 5.46 -3.82 -0.02 0.77 16 12 N -0.67 -7.73 3.66 -106.39 -0.39 -8.12 16 13 C 0.09 0.85 2.75 -67.39 -0.19 0.67 16 14 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 15 C -0.56 -4.70 6.78 37.79 0.26 -4.45 16 16 S 2.38 20.53 6.07 -107.50 -0.65 19.88 16 17 O -0.93 -10.99 18.17 -57.67 -1.05 -12.04 16 18 O -0.94 -11.41 18.17 -57.67 -1.05 -12.46 16 19 C -0.63 -4.04 5.83 37.65 0.22 -3.82 16 20 C 0.09 0.65 2.62 -67.53 -0.18 0.48 16 21 H 0.11 0.68 7.96 -51.93 -0.41 0.27 16 22 N -0.52 -4.20 3.01 -226.11 -0.68 -4.88 16 23 C -0.01 -0.11 4.24 -3.71 -0.02 -0.13 16 24 C 0.06 0.58 7.01 37.21 0.26 0.84 16 25 O -0.39 -3.99 10.83 -35.23 -0.38 -4.37 16 26 C 0.06 0.50 7.01 37.21 0.26 0.76 16 27 C 0.01 0.10 5.42 -3.71 -0.02 0.08 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.02 7.97 -51.93 -0.41 0.61 16 34 H 0.03 0.43 8.04 -51.93 -0.42 0.01 16 35 H 0.37 4.20 5.96 -39.29 -0.23 3.97 16 36 H 0.14 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.15 1.21 8.05 -51.93 -0.42 0.79 16 38 H 0.14 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.15 0.91 5.21 -51.93 -0.27 0.64 16 40 H 0.04 0.36 5.73 -51.93 -0.30 0.06 16 41 H 0.14 1.28 5.58 -51.93 -0.29 0.99 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.51 8.05 -51.93 -0.42 0.09 16 47 H 0.05 0.33 7.49 -51.93 -0.39 -0.05 16 LS Contribution 371.41 15.07 5.60 5.60 Total: -1.00 -35.24 371.41 -10.74 -45.97 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -7.73 Total: -0.29 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -0.12 Total: -19.76 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.33 Total: -38.93 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -2.48 Total: -28.87 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 20.53 SS G_CDS: -0.65 Total: 19.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.24 -10.74 -45.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116345744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.856 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds