Wall clock time and date at job start Tue Mar 31 2020 16:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00405 * 2 1 4 4 H 1.48495 * 109.47052 * 269.99842 * 3 2 1 5 5 H 1.48506 * 109.46997 * 29.99659 * 3 2 1 6 6 H 1.48493 * 109.47306 * 149.99528 * 3 2 1 7 7 C 1.37880 * 119.99726 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00037 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46951 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47137 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.46864 * 179.97438 * 11 10 9 13 13 C 1.46909 * 110.99752 * 180.02562 * 12 11 10 14 14 H 1.08998 * 108.89007 * 325.69934 * 13 12 11 15 15 C 1.54204 * 108.92473 * 84.37286 * 13 12 11 16 16 S 1.83825 * 102.86069 * 145.65421 * 15 13 12 17 17 O 1.42105 * 109.81071 * 77.68427 * 16 15 13 18 18 O 1.42094 * 109.81105 * 211.99713 * 16 15 13 19 19 C 1.83822 * 94.23506 * 324.85800 * 16 15 13 20 20 C 1.52384 * 108.92282 * 207.03513 * 13 12 11 21 21 H 1.09004 * 108.92677 * 118.65043 * 20 13 12 22 22 N 1.46896 * 108.92966 * 0.13334 * 20 13 12 23 23 C 1.47016 * 110.99846 * 290.04604 * 22 20 13 24 24 C 1.53101 * 109.25832 * 177.60650 * 23 22 20 25 25 O 1.43017 * 109.25625 * 56.84625 * 24 23 22 26 26 C 1.43014 * 113.74175 * 301.33380 * 25 24 23 27 27 C 1.47008 * 110.99965 * 166.41255 * 22 20 13 28 28 H 0.97007 * 119.99365 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47337 * 60.00424 * 9 7 2 30 30 H 1.08999 * 109.47151 * 299.99965 * 9 7 2 31 31 H 1.08996 * 109.47495 * 59.99988 * 10 9 7 32 32 H 1.08999 * 109.47155 * 299.99951 * 10 9 7 33 33 H 1.08995 * 109.46750 * 60.00186 * 11 10 9 34 34 H 1.08999 * 109.47077 * 300.00023 * 11 10 9 35 35 H 1.00895 * 111.00422 * 56.04953 * 12 11 10 36 36 H 1.09004 * 110.73047 * 263.99423 * 15 13 12 37 37 H 1.08997 * 110.73625 * 27.30992 * 15 13 12 38 38 H 1.08999 * 110.73695 * 153.48374 * 19 16 15 39 39 H 1.09002 * 110.73646 * 276.61735 * 19 16 15 40 40 H 1.08997 * 109.50956 * 297.53788 * 23 22 20 41 41 H 1.09004 * 109.50657 * 57.67206 * 23 22 20 42 42 H 1.08999 * 109.50542 * 296.91725 * 24 23 22 43 43 H 1.09000 * 109.54603 * 176.80462 * 24 23 22 44 44 H 1.09000 * 109.50310 * 298.73342 * 26 25 24 45 45 H 1.08998 * 109.54479 * 178.62994 * 26 25 24 46 46 H 1.09001 * 109.50889 * 302.32512 * 27 22 20 47 47 H 1.08998 * 109.50817 * 62.45547 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.2450 -3.6621 0.0018 11 6 1.4800 -4.9871 0.0025 12 7 2.4346 -6.1037 0.0031 13 6 1.7342 -7.3951 0.0031 14 1 0.8168 -7.2990 0.5839 15 6 1.3706 -7.7668 -1.4486 16 16 1.5325 -9.5979 -1.4549 17 8 0.3943 -10.1842 -0.8382 18 8 1.9587 -10.0393 -2.7365 19 6 2.9513 -9.6127 -0.2861 20 6 2.6270 -8.4414 0.6589 21 1 2.1238 -8.8310 1.5439 22 7 3.8843 -7.8039 1.0718 23 6 4.6996 -7.4412 -0.0965 24 6 5.9694 -6.7280 0.3756 25 8 6.6752 -7.5750 1.2866 26 6 5.9108 -7.9472 2.4365 27 6 4.6404 -8.6728 1.9853 28 1 -0.4849 0.8402 -0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6239 -2.5566 0.8903 31 1 2.8710 -3.6040 0.8922 32 1 2.8724 -3.6048 -0.8877 33 1 0.8538 -5.0454 -0.8877 34 1 0.8529 -5.0442 0.8922 35 1 3.0694 -6.0363 0.7844 36 1 0.3475 -7.4691 -1.6785 37 1 2.0720 -7.3149 -2.1499 38 1 2.9886 -10.5531 0.2637 39 1 3.8886 -9.4390 -0.8147 40 1 4.9714 -8.3432 -0.6449 41 1 4.1294 -6.7773 -0.7464 42 1 5.6997 -5.7986 0.8773 43 1 6.6043 -6.5074 -0.4826 44 1 5.6394 -7.0533 2.9981 45 1 6.5026 -8.6087 3.0692 46 1 4.0271 -8.9079 2.8551 47 1 4.9111 -9.5945 1.4702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116345744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:34 Heat of formation + Delta-G solvation = -107.088455 kcal Electronic energy + Delta-G solvation = -28075.185626 eV Core-core repulsion = 24192.269529 eV Total energy + Delta-G solvation = -3882.916097 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32251 -38.93007 -38.13453 -37.11318 -36.81695 -35.35196 -33.93549 -32.25716 -31.95892 -30.05274 -28.38060 -27.47927 -25.42874 -25.09197 -23.71441 -22.05425 -21.59436 -20.63073 -19.89306 -18.49268 -18.12173 -17.78102 -17.25903 -16.84482 -16.79896 -16.60237 -16.53344 -16.33232 -15.93104 -15.65472 -15.46155 -15.13185 -14.98917 -14.48524 -14.17584 -13.95194 -13.69107 -13.49327 -13.36431 -13.30920 -13.17487 -13.08265 -12.78527 -12.69412 -12.43894 -12.34625 -12.27080 -12.06169 -12.03236 -11.80577 -11.64448 -11.40050 -11.31025 -11.17241 -11.02801 -10.62859 -10.53026 -9.56475 -9.14365 -8.18334 -6.28643 -0.95638 1.41453 1.42219 1.48150 1.53260 2.42087 2.50668 2.64677 2.90907 3.04698 3.15370 3.18831 3.48908 3.64448 3.71520 3.85699 4.03555 4.07687 4.13790 4.29877 4.31105 4.34234 4.38166 4.47230 4.57571 4.65657 4.73310 4.78195 4.80431 4.86545 4.94629 4.97886 5.04965 5.14734 5.15962 5.22693 5.32311 5.55381 5.76899 5.81040 5.89815 5.91251 6.12806 6.27619 6.30505 6.68335 6.89227 7.40719 8.93434 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.003233 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.859537 B = 8657.409029 C =10400.306666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.060 0.940 9 C 0.024 3.976 10 C -0.089 4.089 11 C 0.065 3.935 12 N -0.666 5.666 13 C 0.088 3.912 14 H 0.077 0.923 15 C -0.564 4.564 16 S 2.397 3.603 17 O -0.965 6.965 18 O -0.975 6.975 19 C -0.602 4.602 20 C 0.087 3.913 21 H 0.126 0.874 22 N -0.524 5.524 23 C -0.011 4.011 24 C 0.061 3.939 25 O -0.406 6.406 26 C 0.058 3.942 27 C 0.015 3.985 28 H 0.262 0.738 29 H -0.009 1.009 30 H -0.012 1.012 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.368 0.632 36 H 0.142 0.858 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.054 0.946 41 H 0.129 0.871 42 H 0.053 0.947 43 H 0.105 0.895 44 H 0.054 0.946 45 H 0.112 0.888 46 H 0.103 0.897 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.867 -22.549 3.240 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.578 4.578 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.127 4.127 11 C -0.064 4.064 12 N -0.305 5.305 13 C -0.024 4.024 14 H 0.094 0.906 15 C -0.695 4.695 16 S 2.583 3.417 17 O -0.962 6.962 18 O -0.972 6.972 19 C -0.735 4.735 20 C -0.024 4.024 21 H 0.144 0.856 22 N -0.249 5.249 23 C -0.138 4.138 24 C -0.016 4.016 25 O -0.325 6.325 26 C -0.019 4.019 27 C -0.113 4.113 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.007 0.993 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.196 0.804 36 H 0.160 0.840 37 H 0.172 0.828 38 H 0.181 0.819 39 H 0.173 0.827 40 H 0.072 0.928 41 H 0.147 0.853 42 H 0.071 0.929 43 H 0.123 0.877 44 H 0.073 0.927 45 H 0.130 0.870 46 H 0.121 0.879 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.379 -22.817 2.338 24.780 hybrid contribution -0.091 1.134 0.779 1.379 sum 9.288 -21.683 3.117 23.793 Atomic orbital electron populations 1.70098 1.07790 1.27642 1.51955 1.25959 0.95720 1.03290 0.94877 0.85490 0.78728 0.78638 0.78453 1.19861 1.20922 1.18686 1.21715 0.93540 0.92434 1.50102 0.92203 1.18979 0.94511 0.93245 0.94616 1.21323 0.97867 0.92845 1.00700 1.21958 0.94277 0.90457 0.99739 1.60982 1.18592 0.99285 1.51668 1.21618 0.96967 0.91538 0.92314 0.90552 1.30601 1.12139 1.22316 1.04469 1.08682 0.77676 0.79405 0.75896 1.93593 1.48747 1.75778 1.78069 1.93567 1.83066 1.80638 1.39953 1.30968 1.19051 1.08169 1.15274 1.22090 0.92272 0.89539 0.98485 0.85611 1.62145 1.04586 1.41671 1.16487 1.23485 0.95442 1.01384 0.93521 1.22740 0.92795 0.92633 0.93403 1.87958 1.41291 1.68864 1.34404 1.22802 0.91916 0.99490 0.87677 1.22905 0.95722 0.94952 0.97678 0.92888 0.99102 0.99320 0.93394 0.92577 0.91805 0.95939 0.80435 0.84008 0.82809 0.81928 0.82740 0.92826 0.85346 0.92865 0.87677 0.92735 0.86971 0.87868 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 7 C -0.54 -30.29 9.11 25.60 0.23 -30.06 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.24 4.97 29.85 0.15 1.39 16 10 C -0.09 -3.41 5.41 30.60 0.17 -3.25 16 11 C 0.06 1.93 5.46 86.31 0.47 2.41 16 12 N -0.67 -14.36 3.66 -490.50 -1.80 -16.16 16 13 C 0.09 1.46 2.75 45.12 0.12 1.58 16 14 H 0.08 1.29 7.75 -2.39 -0.02 1.27 16 15 C -0.56 -8.74 6.78 72.39 0.49 -8.24 16 16 S 2.40 38.27 6.07 -56.49 -0.34 37.93 16 17 O -0.96 -21.78 18.17 -127.53 -2.32 -24.10 16 18 O -0.98 -23.11 18.17 -127.53 -2.32 -25.43 16 19 C -0.60 -5.92 5.83 72.30 0.42 -5.49 16 20 C 0.09 1.05 2.62 45.03 0.12 1.17 16 21 H 0.13 1.13 7.96 -2.39 -0.02 1.11 16 22 N -0.52 -7.15 3.01 -869.29 -2.62 -9.77 16 23 C -0.01 -0.17 4.24 86.31 0.37 0.20 16 24 C 0.06 1.06 7.01 72.02 0.50 1.56 16 25 O -0.41 -7.68 10.83 -148.98 -1.61 -9.29 16 26 C 0.06 0.79 7.01 72.02 0.50 1.29 16 27 C 0.02 0.17 5.42 86.32 0.47 0.63 16 28 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 1.95 7.97 -2.39 -0.02 1.93 16 34 H 0.02 0.69 8.04 -2.39 -0.02 0.67 16 35 H 0.37 7.87 5.96 -89.70 -0.54 7.33 16 36 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.15 2.30 8.05 -2.39 -0.02 2.28 16 38 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.15 1.41 5.21 -2.39 -0.01 1.40 16 40 H 0.05 0.72 5.73 -2.39 -0.01 0.71 16 41 H 0.13 2.18 5.58 -2.39 -0.01 2.17 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.10 0.82 8.05 -2.39 -0.02 0.80 16 47 H 0.06 0.56 7.49 -2.39 -0.02 0.54 16 Total: -1.00 -76.22 371.41 -3.79 -80.01 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 0.43 Total: 13.59 kcal Atomic # 6 Polarization: -40.88 SS G_CDS: 4.48 Total: -36.40 kcal Atomic # 7 Polarization: -78.10 SS G_CDS: -4.13 Total: -82.23 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -6.25 Total: -58.82 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 38.27 SS G_CDS: -0.34 Total: 37.93 kcal Total: -76.22 -3.79 -80.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116345744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.077 kcal (2) G-P(sol) polarization free energy of solvation -76.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds