Wall clock time and date at job start Tue Mar 31 2020 16:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 H 1.08996 * 108.89712 * 327.77206 * 13 12 11 15 15 C 1.53616 * 108.92776 * 86.45498 * 13 12 11 16 16 S 1.83241 * 105.34459 * 123.10083 * 15 13 12 17 17 O 1.42103 * 109.61363 * 133.32668 * 16 15 13 18 18 O 1.42099 * 109.61794 * 267.09531 * 16 15 13 19 19 C 1.83839 * 95.32008 * 20.30517 * 16 15 13 20 20 C 1.52967 * 108.93126 * 209.21777 * 13 12 11 21 21 H 1.09000 * 109.65606 * 329.17725 * 20 13 12 22 22 N 1.46897 * 109.65601 * 89.49684 * 20 13 12 23 23 C 1.47016 * 111.00096 * 303.63495 * 22 20 13 24 24 C 1.53086 * 109.26083 * 177.60385 * 23 22 20 25 25 O 1.43010 * 109.26066 * 56.84967 * 24 23 22 26 26 C 1.43023 * 113.73675 * 301.33092 * 25 24 23 27 27 C 1.47014 * 111.00480 * 179.97438 * 22 20 13 28 28 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 30 30 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 31 31 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 32 32 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 33 33 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 34 34 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 35 35 H 1.00902 * 111.00582 * 303.95797 * 12 11 10 36 36 H 1.08993 * 110.27312 * 242.06957 * 15 13 12 37 37 H 1.09004 * 110.27323 * 4.04632 * 15 13 12 38 38 H 1.09003 * 111.08367 * 82.05305 * 19 16 15 39 39 H 1.09011 * 111.07751 * 206.05438 * 19 16 15 40 40 H 1.08995 * 109.50365 * 297.54316 * 23 22 20 41 41 H 1.09004 * 109.50278 * 57.66671 * 23 22 20 42 42 H 1.08996 * 109.51142 * 296.90982 * 24 23 22 43 43 H 1.09006 * 109.54415 * 176.80890 * 24 23 22 44 44 H 1.09001 * 109.49915 * 298.73022 * 26 25 24 45 45 H 1.08997 * 109.53852 * 178.62840 * 26 25 24 46 46 H 1.08997 * 109.50600 * 302.32660 * 27 22 20 47 47 H 1.08999 * 109.50251 * 62.45533 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0018 14 1 0.8002 -7.2893 0.5527 15 6 1.4166 -7.7907 -1.4481 16 16 2.1971 -9.4316 -1.6852 17 8 1.2761 -10.3113 -2.3152 18 8 3.5032 -9.2658 -2.2200 19 6 2.3043 -9.8299 0.1063 20 6 2.6090 -8.4330 0.7075 21 1 3.6608 -8.1903 0.5561 22 7 2.3076 -8.4375 2.1452 23 6 2.4866 -7.0985 2.7253 24 6 2.1055 -7.1353 4.2075 25 8 2.8959 -8.1237 4.8734 26 6 2.7455 -9.4400 4.3345 27 6 3.1326 -9.4270 2.8535 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6042 -0.8894 33 1 0.8534 -5.0451 -0.8886 34 1 0.8541 -5.0445 0.8914 35 1 3.0694 -6.0367 -0.7812 36 1 0.3386 -7.8609 -1.5925 37 1 1.8433 -7.0646 -2.1401 38 1 1.3566 -10.2188 0.4789 39 1 3.1172 -10.5286 0.3046 40 1 3.5285 -6.7947 2.6247 41 1 1.8473 -6.3871 2.2026 42 1 1.0496 -7.3868 4.3058 43 1 2.2902 -6.1590 4.6558 44 1 1.7080 -9.7585 4.4365 45 1 3.3931 -10.1310 4.8741 46 1 2.9648 -10.4148 2.4244 47 1 4.1850 -9.1607 2.7550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116345745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:38 Heat of formation + Delta-G solvation = -103.447033 kcal Electronic energy + Delta-G solvation = -27716.966959 eV Core-core repulsion = 23834.208766 eV Total energy + Delta-G solvation = -3882.758193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.19996 -38.26097 -37.33054 -36.33120 -35.82040 -34.02020 -32.66590 -31.50335 -30.79704 -29.14366 -27.23924 -26.16822 -24.63213 -23.55926 -22.39808 -21.26901 -20.56818 -20.01206 -19.19606 -17.69407 -16.96918 -16.37407 -16.31286 -16.18634 -15.99659 -15.73776 -15.27124 -15.11163 -15.05860 -14.54352 -14.45405 -14.24454 -14.02923 -13.52771 -13.32997 -12.83907 -12.53804 -12.46538 -12.38521 -12.35005 -12.23434 -12.09330 -11.84197 -11.59298 -11.51359 -11.30775 -11.02268 -10.88264 -10.77126 -10.68881 -10.63335 -10.52768 -9.87762 -9.78504 -9.42114 -9.13988 -8.70261 -8.53404 -8.38886 -6.04381 -4.06860 -0.31992 2.10560 3.21120 3.28392 3.30815 3.35388 3.37893 3.58306 3.71021 3.94292 4.03495 4.30661 4.37564 4.43700 4.58733 4.67240 4.73309 4.84470 4.93757 4.96748 5.05084 5.18424 5.23374 5.31672 5.34489 5.42262 5.45084 5.46605 5.58623 5.60523 5.73095 5.84178 5.93542 6.16760 6.51156 6.57868 6.63371 6.66424 6.96034 7.00798 7.04764 7.30285 7.61087 7.74424 7.94926 8.37671 8.99958 9.57665 11.06906 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.003175 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.902547 B = 8817.155532 C =10871.365254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.057 3.943 12 N -0.682 5.682 13 C 0.094 3.906 14 H 0.110 0.890 15 C -0.614 4.614 16 S 2.387 3.613 17 O -0.938 6.938 18 O -0.930 6.930 19 C -0.578 4.578 20 C 0.097 3.903 21 H 0.076 0.924 22 N -0.519 5.519 23 C 0.019 3.981 24 C 0.061 3.939 25 O -0.387 6.387 26 C 0.065 3.935 27 C 0.013 3.987 28 H 0.261 0.739 29 H 0.013 0.987 30 H 0.016 0.984 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.345 0.655 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.052 0.948 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.101 0.899 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.279 -22.980 4.112 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.071 4.071 12 N -0.313 5.313 13 C -0.018 4.018 14 H 0.128 0.872 15 C -0.746 4.746 16 S 2.569 3.431 17 O -0.934 6.934 18 O -0.927 6.927 19 C -0.708 4.708 20 C -0.014 4.014 21 H 0.094 0.906 22 N -0.245 5.245 23 C -0.108 4.108 24 C -0.016 4.016 25 O -0.306 6.306 26 C -0.012 4.012 27 C -0.115 4.115 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.119 0.881 44 H 0.076 0.924 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.115 -23.422 4.173 23.994 hybrid contribution 0.478 1.552 -0.650 1.749 sum 3.593 -21.870 3.524 22.442 Atomic orbital electron populations 1.69948 1.06064 1.26759 1.50765 1.25019 0.94843 0.99273 0.95270 0.86658 0.79588 0.83102 0.78655 1.20264 1.21291 1.20192 1.21195 0.93004 0.91029 1.50728 0.92737 1.19046 0.93935 0.91329 0.97118 1.21644 0.99257 0.92790 1.00929 1.22240 0.94070 0.90413 1.00401 1.60741 1.19965 1.00470 1.50158 1.21651 0.98965 0.90950 0.90242 0.87227 1.31108 1.14577 1.22894 1.06029 1.09168 0.76198 0.78863 0.78844 1.93620 1.64376 1.62352 1.73089 1.93649 1.37074 1.85854 1.76100 1.30772 1.11992 1.04452 1.23619 1.22000 0.99571 0.89645 0.90167 0.90580 1.62281 1.54452 1.07083 1.00647 1.22921 1.02536 0.90134 0.95236 1.22781 0.94986 0.92433 0.91428 1.87996 1.67623 1.17211 1.57736 1.22613 1.01406 0.85133 0.92069 1.22856 0.96014 0.97090 0.95547 0.92931 0.96843 0.96567 0.92434 0.93502 0.95068 0.91093 0.83546 0.83825 0.84239 0.83376 0.84616 0.92961 0.87459 0.92466 0.88098 0.92383 0.88679 0.89563 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.02 5.41 -26.74 -0.14 -2.16 16 11 C 0.06 0.81 5.10 -3.83 -0.02 0.79 16 12 N -0.68 -7.65 4.71 -106.40 -0.50 -8.15 16 13 C 0.09 0.84 1.81 -67.41 -0.12 0.72 16 14 H 0.11 1.00 7.21 -51.93 -0.37 0.63 16 15 C -0.61 -4.70 6.80 37.48 0.26 -4.44 16 16 S 2.39 19.74 6.05 -107.50 -0.65 19.09 16 17 O -0.94 -10.87 18.16 -57.69 -1.05 -11.92 16 18 O -0.93 -10.95 18.16 -57.69 -1.05 -12.00 16 19 C -0.58 -3.55 5.86 38.27 0.22 -3.33 16 20 C 0.10 0.80 2.01 -66.62 -0.13 0.67 16 21 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 22 N -0.52 -4.64 4.52 -225.04 -1.02 -5.66 16 23 C 0.02 0.20 4.91 -3.72 -0.02 0.18 16 24 C 0.06 0.62 7.01 37.20 0.26 0.88 16 25 O -0.39 -4.30 10.83 -35.23 -0.38 -4.69 16 26 C 0.07 0.53 7.01 37.20 0.26 0.79 16 27 C 0.01 0.10 5.42 -3.72 -0.02 0.08 16 28 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.45 8.05 -51.93 -0.42 0.03 16 34 H 0.07 1.02 7.30 -51.93 -0.38 0.64 16 35 H 0.35 3.72 8.08 -39.29 -0.32 3.40 16 36 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.14 1.06 7.48 -51.93 -0.39 0.68 16 38 H 0.15 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.14 0.61 7.63 -51.92 -0.40 0.22 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.11 1.22 4.85 -51.93 -0.25 0.96 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.51 6.73 -51.93 -0.35 0.16 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -35.12 376.58 -11.17 -46.29 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.91 Total: -0.72 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.01 Total: -18.57 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: -0.78 Total: -39.52 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -2.48 Total: -28.60 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 19.74 SS G_CDS: -0.65 Total: 19.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.12 -11.17 -46.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116345745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.153 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds