Wall clock time and date at job start Tue Mar 31 2020 16:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.47114 * 239.99746 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.46904 * 111.00029 * 179.97438 * 12 11 10 14 14 H 1.08996 * 108.89712 * 327.77206 * 13 12 11 15 15 C 1.53616 * 108.92776 * 86.45498 * 13 12 11 16 16 S 1.83241 * 105.34459 * 123.10083 * 15 13 12 17 17 O 1.42103 * 109.61363 * 133.32668 * 16 15 13 18 18 O 1.42099 * 109.61794 * 267.09531 * 16 15 13 19 19 C 1.83839 * 95.32008 * 20.30517 * 16 15 13 20 20 C 1.52967 * 108.93126 * 209.21777 * 13 12 11 21 21 H 1.09000 * 109.65606 * 329.17725 * 20 13 12 22 22 N 1.46897 * 109.65601 * 89.49684 * 20 13 12 23 23 C 1.47016 * 111.00096 * 303.63495 * 22 20 13 24 24 C 1.53086 * 109.26083 * 177.60385 * 23 22 20 25 25 O 1.43010 * 109.26066 * 56.84967 * 24 23 22 26 26 C 1.43023 * 113.73675 * 301.33092 * 25 24 23 27 27 C 1.47014 * 111.00480 * 179.97438 * 22 20 13 28 28 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 30 30 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 31 31 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 32 32 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 33 33 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 34 34 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 35 35 H 1.00902 * 111.00582 * 303.95797 * 12 11 10 36 36 H 1.08993 * 110.27312 * 242.06957 * 15 13 12 37 37 H 1.09004 * 110.27323 * 4.04632 * 15 13 12 38 38 H 1.09003 * 111.08367 * 82.05305 * 19 16 15 39 39 H 1.09011 * 111.07751 * 206.05438 * 19 16 15 40 40 H 1.08995 * 109.50365 * 297.54316 * 23 22 20 41 41 H 1.09004 * 109.50278 * 57.66671 * 23 22 20 42 42 H 1.08996 * 109.51142 * 296.90982 * 24 23 22 43 43 H 1.09006 * 109.54415 * 176.80890 * 24 23 22 44 44 H 1.09001 * 109.49915 * 298.73022 * 26 25 24 45 45 H 1.08997 * 109.53852 * 178.62840 * 26 25 24 46 46 H 1.08997 * 109.50600 * 302.32660 * 27 22 20 47 47 H 1.08999 * 109.50251 * 62.45533 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 1.7347 -7.3950 0.0018 14 1 0.8002 -7.2893 0.5527 15 6 1.4166 -7.7907 -1.4481 16 16 2.1971 -9.4316 -1.6852 17 8 1.2761 -10.3113 -2.3152 18 8 3.5032 -9.2658 -2.2200 19 6 2.3043 -9.8299 0.1063 20 6 2.6090 -8.4330 0.7075 21 1 3.6608 -8.1903 0.5561 22 7 2.3076 -8.4375 2.1452 23 6 2.4866 -7.0985 2.7253 24 6 2.1055 -7.1353 4.2075 25 8 2.8959 -8.1237 4.8734 26 6 2.7455 -9.4400 4.3345 27 6 3.1326 -9.4270 2.8535 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8905 32 1 2.8720 -3.6042 -0.8894 33 1 0.8534 -5.0451 -0.8886 34 1 0.8541 -5.0445 0.8914 35 1 3.0694 -6.0367 -0.7812 36 1 0.3386 -7.8609 -1.5925 37 1 1.8433 -7.0646 -2.1401 38 1 1.3566 -10.2188 0.4789 39 1 3.1172 -10.5286 0.3046 40 1 3.5285 -6.7947 2.6247 41 1 1.8473 -6.3871 2.2026 42 1 1.0496 -7.3868 4.3058 43 1 2.2902 -6.1590 4.6558 44 1 1.7080 -9.7585 4.4365 45 1 3.3931 -10.1310 4.8741 46 1 2.9648 -10.4148 2.4244 47 1 4.1850 -9.1607 2.7550 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116345745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:37 Heat of formation + Delta-G solvation = -132.288534 kcal Electronic energy + Delta-G solvation = -27718.217620 eV Core-core repulsion = 23834.208766 eV Total energy + Delta-G solvation = -3884.008855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93491 -39.07755 -38.12795 -37.13245 -36.88409 -35.52475 -34.06367 -32.50170 -31.84303 -30.06934 -28.15595 -27.53531 -25.53976 -24.57811 -23.69136 -22.26716 -21.60317 -21.04616 -19.89381 -18.60261 -18.26651 -17.67518 -17.07253 -16.93262 -16.74640 -16.65420 -16.56283 -16.10829 -15.85714 -15.76074 -15.58548 -15.06109 -14.92823 -14.51321 -14.17879 -14.04626 -13.90365 -13.35681 -13.32836 -13.26758 -13.17774 -13.12147 -12.94601 -12.79072 -12.61298 -12.47891 -12.28372 -12.22897 -12.11382 -11.71369 -11.54110 -11.51187 -11.35950 -11.28140 -11.04326 -10.60535 -10.53845 -9.48109 -9.42949 -8.19854 -6.30072 -0.98425 1.40304 1.42359 1.46927 1.50301 2.40713 2.54596 2.58119 2.89183 3.02244 3.13765 3.15346 3.35996 3.62541 3.69986 3.98567 3.99915 4.06510 4.11794 4.27270 4.28203 4.36326 4.39651 4.40847 4.45354 4.66871 4.70402 4.72365 4.78519 4.81780 4.83434 4.93418 5.02652 5.05296 5.11940 5.17861 5.26525 5.53149 5.77459 5.84345 5.88294 5.94142 5.98337 6.24567 6.27679 6.35848 6.87240 7.39224 8.91494 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.003175 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.902547 B = 8817.155532 C =10871.365254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.026 3.974 10 C -0.094 4.094 11 C 0.073 3.927 12 N -0.681 5.681 13 C 0.095 3.905 14 H 0.112 0.888 15 C -0.609 4.609 16 S 2.402 3.598 17 O -0.972 6.972 18 O -0.968 6.968 19 C -0.555 4.555 20 C 0.094 3.906 21 H 0.071 0.929 22 N -0.516 5.516 23 C 0.025 3.975 24 C 0.061 3.939 25 O -0.409 6.409 26 C 0.059 3.941 27 C 0.011 3.989 28 H 0.263 0.737 29 H -0.009 1.009 30 H -0.006 1.006 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.349 0.651 36 H 0.161 0.839 37 H 0.140 0.860 38 H 0.170 0.830 39 H 0.161 0.839 40 H 0.034 0.966 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.065 0.935 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.858 -24.302 4.563 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.132 4.132 11 C -0.056 4.056 12 N -0.313 5.313 13 C -0.017 4.017 14 H 0.130 0.870 15 C -0.741 4.741 16 S 2.588 3.412 17 O -0.968 6.968 18 O -0.965 6.965 19 C -0.687 4.687 20 C -0.017 4.017 21 H 0.089 0.911 22 N -0.242 5.242 23 C -0.103 4.103 24 C -0.016 4.016 25 O -0.328 6.328 26 C -0.017 4.017 27 C -0.117 4.117 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.012 0.988 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.179 0.821 37 H 0.159 0.841 38 H 0.188 0.812 39 H 0.178 0.822 40 H 0.053 0.947 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.712 -24.771 4.593 25.466 hybrid contribution 0.287 1.932 -0.728 2.084 sum 3.999 -22.840 3.865 23.507 Atomic orbital electron populations 1.70075 1.07670 1.27750 1.51749 1.25923 0.95727 1.03162 0.94831 0.85577 0.78348 0.78466 0.79123 1.19348 1.20881 1.19250 1.21683 0.93469 0.92581 1.50401 0.92459 1.18952 0.94409 0.92942 0.94846 1.21379 0.98015 0.93095 1.00742 1.21892 0.93825 0.89405 1.00481 1.60631 1.19468 1.00640 1.50557 1.21701 0.99027 0.89885 0.91129 0.86957 1.31053 1.15688 1.22303 1.05067 1.08544 0.74722 0.78333 0.79552 1.93575 1.64979 1.63452 1.74836 1.93598 1.38766 1.86327 1.77817 1.30670 1.14247 1.03687 1.20084 1.22010 0.99164 0.90611 0.89934 0.91065 1.62317 1.54667 1.06371 1.00845 1.22778 1.01102 0.90966 0.95472 1.22760 0.95194 0.92442 0.91197 1.87965 1.67924 1.18496 1.58402 1.22839 1.02365 0.84098 0.92442 1.22971 0.95347 0.97905 0.95475 0.92821 0.99107 0.98771 0.92815 0.93355 0.94980 0.91114 0.83123 0.82146 0.84146 0.81164 0.82156 0.94745 0.88421 0.91926 0.88502 0.91708 0.86871 0.86845 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -30.37 9.11 25.60 0.23 -30.14 16 8 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 9 C 0.03 1.32 4.97 29.84 0.15 1.47 16 10 C -0.09 -3.55 5.41 30.59 0.17 -3.38 16 11 C 0.07 2.05 5.10 86.30 0.44 2.49 16 12 N -0.68 -14.62 4.71 -490.55 -2.31 -16.93 16 13 C 0.09 1.52 1.81 45.11 0.08 1.60 16 14 H 0.11 1.82 7.21 -2.39 -0.02 1.81 16 15 C -0.61 -8.28 6.80 72.19 0.49 -7.78 16 16 S 2.40 35.94 6.05 -56.49 -0.34 35.60 16 17 O -0.97 -21.28 18.16 -127.50 -2.32 -23.59 16 18 O -0.97 -21.97 18.16 -127.50 -2.32 -24.28 16 19 C -0.55 -5.00 5.86 72.70 0.43 -4.57 16 20 C 0.09 1.33 2.01 45.62 0.09 1.43 16 21 H 0.07 1.14 8.04 -2.39 -0.02 1.12 16 22 N -0.52 -8.10 4.52 -865.88 -3.92 -12.02 16 23 C 0.02 0.50 4.91 86.31 0.42 0.93 16 24 C 0.06 1.21 7.01 72.01 0.50 1.72 16 25 O -0.41 -8.64 10.83 -148.98 -1.61 -10.25 16 26 C 0.06 0.83 7.01 72.01 0.50 1.34 16 27 C 0.01 0.14 5.42 86.31 0.47 0.61 16 28 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 29 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 30 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.03 0.90 8.05 -2.39 -0.02 0.88 16 34 H 0.07 2.01 7.30 -2.39 -0.02 2.00 16 35 H 0.35 7.17 8.08 -89.69 -0.72 6.44 16 36 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.14 1.96 7.48 -2.38 -0.02 1.94 16 38 H 0.17 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.16 0.78 7.63 -2.38 -0.02 0.76 16 40 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 2.15 4.85 -2.39 -0.01 2.14 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.11 0.86 6.73 -2.39 -0.02 0.85 16 47 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -76.34 376.58 -5.83 -82.17 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.23 Total: 12.81 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 4.44 Total: -33.76 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -5.94 Total: -84.57 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -6.24 Total: -58.13 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: 35.94 SS G_CDS: -0.34 Total: 35.60 kcal Total: -76.34 -5.83 -82.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116345745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.122 kcal (2) G-P(sol) polarization free energy of solvation -76.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds