Wall clock time and date at job start Tue Mar 31 2020 16:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86797 * 119.99674 * 2 1 4 4 H 1.48491 * 109.47197 * 269.99652 * 3 2 1 5 5 H 1.48496 * 109.47277 * 30.00240 * 3 2 1 6 6 H 1.48512 * 109.46790 * 150.00095 * 3 2 1 7 7 C 1.38798 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99966 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99819 * 180.02562 * 7 2 1 10 10 C 1.81008 * 99.99874 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46826 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00398 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99655 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46828 * 180.02562 * 14 13 11 16 16 N 1.46904 * 109.47152 * 180.02562 * 15 14 13 17 17 C 1.46896 * 111.00095 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47114 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47127 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47036 * 179.97438 * 19 18 17 21 21 C 1.42901 * 113.99948 * 180.02562 * 20 19 18 22 22 H 1.09004 * 110.45428 * 330.69860 * 21 20 19 23 23 C 1.54509 * 110.51276 * 208.10143 * 21 20 19 24 24 C 1.54486 * 104.06058 * 241.35562 * 23 21 20 25 25 O 1.44421 * 104.80033 * 23.97662 * 24 23 21 26 26 C 1.44780 * 105.29935 * 319.44971 * 25 24 23 27 27 H 0.96998 * 119.99917 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46752 * 60.00034 * 10 9 7 29 29 H 1.08996 * 109.46926 * 300.00116 * 10 9 7 30 30 H 0.97003 * 119.99839 * 359.97438 * 13 11 10 31 31 H 1.08993 * 109.47570 * 59.99992 * 14 13 11 32 32 H 1.08996 * 109.47204 * 299.99517 * 14 13 11 33 33 H 1.08996 * 109.47707 * 59.99586 * 15 14 13 34 34 H 1.09001 * 109.46584 * 299.99165 * 15 14 13 35 35 H 1.00899 * 110.99247 * 303.94883 * 16 15 14 36 36 H 1.09001 * 109.47267 * 59.99263 * 17 16 15 37 37 H 1.09004 * 109.47041 * 299.99667 * 17 16 15 38 38 H 1.09001 * 109.46832 * 59.99999 * 18 17 16 39 39 H 1.08993 * 109.47194 * 299.99521 * 18 17 16 40 40 H 1.09001 * 109.46801 * 300.00272 * 19 18 17 41 41 H 1.09001 * 109.46998 * 59.99868 * 19 18 17 42 42 H 1.09005 * 110.51010 * 359.97438 * 23 21 20 43 43 H 1.08995 * 110.51612 * 122.71141 * 23 21 20 44 44 H 1.08998 * 110.36917 * 142.80867 * 24 23 21 45 45 H 1.08998 * 110.36614 * 265.14670 * 24 23 21 46 46 H 1.09001 * 110.42942 * 281.78340 * 26 25 24 47 47 H 1.09002 * 110.48692 * 159.32609 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5732 -3.2324 0.0008 12 8 6.3441 -2.2963 0.0014 13 7 6.0458 -4.4947 0.0001 14 6 7.4908 -4.7357 0.0006 15 6 7.7565 -6.2424 -0.0011 16 7 9.2055 -6.4842 0.0000 17 6 9.4991 -7.9235 -0.0009 18 6 11.0144 -8.1349 -0.0004 19 6 11.3203 -9.6341 -0.0007 20 8 12.7355 -9.8315 -0.0009 21 6 13.1308 -11.2047 -0.0018 22 1 12.3803 -11.8175 0.4977 23 6 14.5073 -11.3723 0.6798 24 6 15.4097 -11.9488 -0.4337 25 8 14.7822 -11.5368 -1.6675 26 6 13.3608 -11.7009 -1.4465 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8894 29 1 3.6434 -3.4317 0.8906 30 1 5.4291 -5.2435 0.0000 31 1 7.9334 -4.2893 0.8910 32 1 7.9341 -4.2880 -0.8889 33 1 7.3140 -6.6885 -0.8917 34 1 7.3132 -6.6904 0.8882 35 1 9.6494 -6.0238 -0.7805 36 1 9.0690 -8.3815 -0.8916 37 1 9.0675 -8.3829 0.8884 38 1 11.4448 -7.6768 0.8901 39 1 11.4456 -7.6756 -0.8899 40 1 10.8890 -10.0930 0.8889 41 1 10.8897 -10.0925 -0.8910 42 1 14.8865 -10.4076 1.0170 43 1 14.4379 -12.0698 1.5145 44 1 16.4144 -11.5324 -0.3614 45 1 15.4432 -13.0364 -0.3697 46 1 13.0805 -12.7504 -1.5364 47 1 12.7926 -11.0937 -2.1512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123798838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:16 Heat of formation + Delta-G solvation = -136.129267 kcal Electronic energy + Delta-G solvation = -24218.754945 eV Core-core repulsion = 20334.579544 eV Total energy + Delta-G solvation = -3884.175401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.21129 -39.32846 -38.04292 -37.06968 -34.75147 -32.79191 -32.43904 -31.56719 -29.99378 -29.20064 -27.65466 -25.62048 -24.72581 -23.36812 -22.50354 -22.00464 -21.49683 -20.47836 -17.91630 -17.82491 -17.06204 -16.79347 -16.57000 -16.40127 -16.05346 -15.81401 -15.58769 -15.16363 -14.99225 -14.85412 -14.28394 -14.15114 -14.01121 -13.63002 -13.33643 -13.20059 -12.85356 -12.79648 -12.62644 -12.29480 -12.12338 -12.02967 -11.83516 -11.70996 -11.60011 -11.35013 -11.32964 -11.26293 -11.00568 -10.60829 -10.59790 -9.95415 -9.85845 -9.55418 -9.03035 -8.97519 -8.93073 -8.50181 -6.91985 -6.29155 -4.00952 2.69632 2.89882 2.97142 3.25841 3.33667 3.35130 3.51115 3.59039 3.90406 4.02071 4.20123 4.33413 4.36223 4.40056 4.49597 4.56042 4.61674 4.64667 4.75653 4.80001 4.81225 4.83819 4.91119 5.00802 5.05372 5.10072 5.13063 5.15807 5.18988 5.23381 5.30710 5.39858 5.60881 5.66893 5.68564 5.77679 5.84081 6.00452 6.11731 6.42538 6.54253 6.66748 6.88365 7.58118 7.93924 8.41211 8.47995 9.17159 10.80099 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.058027 B = 0.001176 C = 0.001167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.415665 B =23795.296236 C =23995.107218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.122 3.878 15 C 0.050 3.950 16 N -0.686 5.686 17 C 0.064 3.936 18 C -0.118 4.118 19 C 0.061 3.939 20 O -0.371 6.371 21 C 0.056 3.944 22 H 0.078 0.922 23 C -0.155 4.155 24 C 0.044 3.956 25 O -0.370 6.370 26 C 0.023 3.977 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.399 0.601 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.346 0.654 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.381 -28.808 0.322 39.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.318 5.318 17 C -0.065 4.065 18 C -0.156 4.156 19 C -0.016 4.016 20 O -0.290 6.290 21 C -0.003 4.003 22 H 0.096 0.904 23 C -0.193 4.193 24 C -0.033 4.033 25 O -0.289 6.289 26 C -0.054 4.054 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.233 0.767 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.164 0.836 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 27.799 -26.841 0.814 38.651 hybrid contribution -1.709 -1.309 -0.754 2.281 sum 26.090 -28.150 0.060 38.382 Atomic orbital electron populations 1.69941 1.05932 1.27779 1.48096 1.24707 0.94437 0.98962 0.93135 0.86737 0.81925 0.83264 0.79953 1.19200 1.19915 1.15886 1.22322 0.88291 0.97547 1.58804 0.89392 1.84807 1.09249 1.00035 1.97426 1.23277 0.93939 1.04424 1.05821 1.20270 0.90605 0.82187 0.75270 1.90706 1.58777 1.42159 1.47539 1.45858 1.07309 1.08155 1.77920 1.21149 0.81466 0.94517 1.03083 1.22096 0.88623 0.95894 1.01376 1.60256 1.09924 1.10844 1.50748 1.21815 0.95165 0.88607 1.00956 1.21458 0.95453 0.94290 1.04382 1.22523 0.81552 0.97278 1.00219 1.88000 1.22356 1.23823 1.94817 1.23514 0.97118 0.83997 0.95654 0.90446 1.23092 0.93940 1.03430 0.98801 1.23437 0.97700 0.98898 0.83228 1.89234 1.17863 1.87325 1.34446 1.24043 0.83619 1.00666 0.97097 0.91936 0.88506 0.88406 0.76746 0.90568 0.91718 0.94425 0.90193 0.83562 0.94923 0.90622 0.89905 0.90943 0.92981 0.93321 0.88980 0.89501 0.88646 0.92074 0.91396 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 2 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.82 27.74 -169.99 -4.72 17.10 16 4 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.23 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 10 C -0.12 -2.38 6.16 36.00 0.22 -2.15 16 11 C 0.53 9.38 7.85 -10.98 -0.09 9.30 16 12 O -0.52 -11.25 15.86 5.56 0.09 -11.16 16 13 N -0.74 -9.10 5.56 -60.30 -0.34 -9.44 16 14 C 0.12 1.33 5.93 -4.04 -0.02 1.31 16 15 C 0.05 0.38 5.80 -3.82 -0.02 0.36 16 16 N -0.69 -5.04 6.50 -113.78 -0.74 -5.78 16 17 C 0.06 0.37 5.69 -3.83 -0.02 0.35 16 18 C -0.12 -0.70 5.84 -26.73 -0.16 -0.86 16 19 C 0.06 0.33 5.79 37.16 0.22 0.55 16 20 O -0.37 -2.78 9.98 -35.23 -0.35 -3.13 16 21 C 0.06 0.30 3.59 -25.16 -0.09 0.21 16 22 H 0.08 0.27 7.84 -51.93 -0.41 -0.14 16 23 C -0.15 -0.71 6.90 -25.16 -0.17 -0.88 16 24 C 0.04 0.22 7.63 37.94 0.29 0.51 16 25 O -0.37 -3.06 11.66 -35.23 -0.41 -3.48 16 26 C 0.02 0.13 7.40 37.93 0.28 0.41 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 30 H 0.40 3.68 8.47 -40.82 -0.35 3.34 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.35 2.36 8.73 -39.29 -0.34 2.02 16 36 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.23 8.11 -51.93 -0.42 -0.19 16 41 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.09 0.51 8.00 -51.93 -0.42 0.09 16 43 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.10 0.57 8.09 -51.93 -0.42 0.15 16 LS Contribution 402.58 15.07 6.07 6.07 Total: -1.00 -35.80 402.58 -9.24 -45.04 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.27 Total: -0.90 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: 0.65 Total: -2.92 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: -0.30 Total: -41.03 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.67 Total: -17.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.72 Total: 17.10 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.80 -9.24 -45.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123798838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.091 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds