Wall clock time and date at job start Tue Mar 31 2020 16:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86797 * 119.99674 * 2 1 4 4 H 1.48491 * 109.47197 * 269.99652 * 3 2 1 5 5 H 1.48496 * 109.47277 * 30.00240 * 3 2 1 6 6 H 1.48512 * 109.46790 * 150.00095 * 3 2 1 7 7 C 1.38798 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99966 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99819 * 180.02562 * 7 2 1 10 10 C 1.81008 * 99.99874 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46826 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00398 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99622 * 180.02562 * 11 10 9 14 14 C 1.46494 * 119.99655 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46828 * 180.02562 * 14 13 11 16 16 N 1.46904 * 109.47152 * 180.02562 * 15 14 13 17 17 C 1.46896 * 111.00095 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47114 * 179.97438 * 17 16 15 19 19 C 1.53006 * 109.47127 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47036 * 179.97438 * 19 18 17 21 21 C 1.42901 * 113.99948 * 180.02562 * 20 19 18 22 22 H 1.09004 * 110.45428 * 330.69860 * 21 20 19 23 23 C 1.54509 * 110.51276 * 208.10143 * 21 20 19 24 24 C 1.54486 * 104.06058 * 241.35562 * 23 21 20 25 25 O 1.44421 * 104.80033 * 23.97662 * 24 23 21 26 26 C 1.44780 * 105.29935 * 319.44971 * 25 24 23 27 27 H 0.96998 * 119.99917 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46752 * 60.00034 * 10 9 7 29 29 H 1.08996 * 109.46926 * 300.00116 * 10 9 7 30 30 H 0.97003 * 119.99839 * 359.97438 * 13 11 10 31 31 H 1.08993 * 109.47570 * 59.99992 * 14 13 11 32 32 H 1.08996 * 109.47204 * 299.99517 * 14 13 11 33 33 H 1.08996 * 109.47707 * 59.99586 * 15 14 13 34 34 H 1.09001 * 109.46584 * 299.99165 * 15 14 13 35 35 H 1.00899 * 110.99247 * 303.94883 * 16 15 14 36 36 H 1.09001 * 109.47267 * 59.99263 * 17 16 15 37 37 H 1.09004 * 109.47041 * 299.99667 * 17 16 15 38 38 H 1.09001 * 109.46832 * 59.99999 * 18 17 16 39 39 H 1.08993 * 109.47194 * 299.99521 * 18 17 16 40 40 H 1.09001 * 109.46801 * 300.00272 * 19 18 17 41 41 H 1.09001 * 109.46998 * 59.99868 * 19 18 17 42 42 H 1.09005 * 110.51010 * 359.97438 * 23 21 20 43 43 H 1.08995 * 110.51612 * 122.71141 * 23 21 20 44 44 H 1.08998 * 110.36917 * 142.80867 * 24 23 21 45 45 H 1.08998 * 110.36614 * 265.14670 * 24 23 21 46 46 H 1.09001 * 110.42942 * 281.78340 * 26 25 24 47 47 H 1.09002 * 110.48692 * 159.32609 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5479 1.4402 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0009 11 6 5.5732 -3.2324 0.0008 12 8 6.3441 -2.2963 0.0014 13 7 6.0458 -4.4947 0.0001 14 6 7.4908 -4.7357 0.0006 15 6 7.7565 -6.2424 -0.0011 16 7 9.2055 -6.4842 0.0000 17 6 9.4991 -7.9235 -0.0009 18 6 11.0144 -8.1349 -0.0004 19 6 11.3203 -9.6341 -0.0007 20 8 12.7355 -9.8315 -0.0009 21 6 13.1308 -11.2047 -0.0018 22 1 12.3803 -11.8175 0.4977 23 6 14.5073 -11.3723 0.6798 24 6 15.4097 -11.9488 -0.4337 25 8 14.7822 -11.5368 -1.6675 26 6 13.3608 -11.7009 -1.4465 27 1 -0.4850 0.8400 -0.0004 28 1 3.6441 -3.4313 -0.8894 29 1 3.6434 -3.4317 0.8906 30 1 5.4291 -5.2435 0.0000 31 1 7.9334 -4.2893 0.8910 32 1 7.9341 -4.2880 -0.8889 33 1 7.3140 -6.6885 -0.8917 34 1 7.3132 -6.6904 0.8882 35 1 9.6494 -6.0238 -0.7805 36 1 9.0690 -8.3815 -0.8916 37 1 9.0675 -8.3829 0.8884 38 1 11.4448 -7.6768 0.8901 39 1 11.4456 -7.6756 -0.8899 40 1 10.8890 -10.0930 0.8889 41 1 10.8897 -10.0925 -0.8910 42 1 14.8865 -10.4076 1.0170 43 1 14.4379 -12.0698 1.5145 44 1 16.4144 -11.5324 -0.3614 45 1 15.4432 -13.0364 -0.3697 46 1 13.0805 -12.7504 -1.5364 47 1 12.7926 -11.0937 -2.1512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123798838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:15 Heat of formation + Delta-G solvation = -164.755896 kcal Electronic energy + Delta-G solvation = -24219.996289 eV Core-core repulsion = 20334.579544 eV Total energy + Delta-G solvation = -3885.416745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.67413 -40.61820 -38.54863 -37.71093 -35.76583 -34.66933 -33.44004 -32.12739 -31.18635 -29.64518 -28.56475 -27.81894 -25.31278 -23.76737 -23.17406 -22.48372 -21.95737 -21.78697 -19.89020 -18.27261 -17.91267 -17.47043 -17.39573 -17.26451 -17.06529 -16.90020 -16.62068 -16.17351 -15.99755 -15.77028 -15.30388 -15.13491 -14.92068 -14.80376 -14.60009 -14.21667 -13.84289 -13.64109 -13.34533 -13.26907 -13.04551 -13.00540 -12.70262 -12.58987 -12.56283 -12.42537 -12.27270 -12.15675 -11.86019 -11.84020 -11.69701 -11.16858 -11.05053 -11.01608 -10.53071 -10.37392 -10.16421 -9.46176 -8.99528 -8.51485 -6.22281 0.99060 1.31725 1.47155 1.55587 1.55855 2.13434 2.25625 2.53818 2.72081 2.87066 2.97965 3.35144 3.56729 3.80570 3.83517 3.93878 4.03003 4.04748 4.07568 4.17222 4.22790 4.23548 4.26297 4.44979 4.46459 4.47727 4.49667 4.52491 4.58682 4.70468 4.75842 4.78960 4.88732 4.91839 4.92465 5.04482 5.15542 5.22425 5.37598 5.70963 5.73228 5.95652 6.11649 6.28114 6.34872 6.45865 6.94052 7.18836 8.60928 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.058027 B = 0.001176 C = 0.001167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.415665 B =23795.296236 C =23995.107218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.047 3.953 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.710 5.710 14 C 0.124 3.876 15 C 0.062 3.938 16 N -0.699 5.699 17 C 0.069 3.931 18 C -0.112 4.112 19 C 0.061 3.939 20 O -0.398 6.398 21 C 0.051 3.949 22 H 0.100 0.900 23 C -0.154 4.154 24 C 0.039 3.961 25 O -0.406 6.406 26 C 0.019 3.981 27 H 0.277 0.723 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.418 0.582 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.348 0.652 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.116 -30.771 0.578 41.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.261 4.261 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.365 5.365 14 C 0.000 4.000 15 C -0.067 4.067 16 N -0.331 5.331 17 C -0.060 4.060 18 C -0.151 4.151 19 C -0.016 4.016 20 O -0.317 6.317 21 C -0.007 4.007 22 H 0.118 0.882 23 C -0.191 4.191 24 C -0.037 4.037 25 O -0.326 6.326 26 C -0.058 4.058 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.255 0.745 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.166 0.834 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.128 0.872 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 28.526 -28.871 1.074 40.601 hybrid contribution -1.877 -0.881 -0.839 2.237 sum 26.649 -29.752 0.235 39.943 Atomic orbital electron populations 1.70015 1.07299 1.29023 1.49199 1.25537 0.95228 1.02183 0.92851 0.85886 0.80698 0.79698 0.80221 1.18702 1.18310 1.16124 1.22468 0.90220 0.96743 1.58239 0.91832 1.84756 1.06471 1.06365 1.97598 1.23268 0.95703 0.99534 1.07644 1.19975 0.89470 0.83315 0.75268 1.90697 1.59394 1.43917 1.50196 1.45589 1.08597 1.06904 1.75408 1.21221 0.79841 0.96960 1.02011 1.21959 0.89063 0.93157 1.02556 1.60246 1.09725 1.12018 1.51152 1.21795 0.94818 0.87615 1.01738 1.21382 0.95647 0.94841 1.03184 1.22583 0.80904 0.96767 1.01331 1.87969 1.23497 1.25303 1.94974 1.23693 0.97994 0.83388 0.95654 0.88201 1.23123 0.93459 1.03225 0.99309 1.23619 0.97746 1.00047 0.82312 1.89186 1.19320 1.87864 1.36186 1.24180 0.82535 1.01784 0.97292 0.91362 0.86640 0.86617 0.74476 0.92185 0.92370 0.92877 0.89271 0.83391 0.93771 0.90026 0.91439 0.91804 0.91731 0.92207 0.90490 0.87183 0.88450 0.90233 0.89377 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.75 13.97 21.65 0.30 -55.45 16 2 C 0.05 2.78 5.50 84.86 0.47 3.24 16 3 Si 0.91 45.01 27.74 68.60 1.90 46.92 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 7 C -0.53 -30.69 10.04 67.95 0.68 -30.01 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 9 S -0.18 -9.00 18.55 -56.49 -1.05 -10.04 16 10 C -0.11 -4.07 6.16 71.23 0.44 -3.63 16 11 C 0.53 18.05 7.85 87.65 0.69 18.74 16 12 O -0.56 -24.21 15.86 -3.01 -0.05 -24.25 16 13 N -0.71 -15.80 5.56 -463.08 -2.57 -18.37 16 14 C 0.12 2.46 5.93 86.38 0.51 2.98 16 15 C 0.06 0.77 5.80 86.30 0.50 1.27 16 16 N -0.70 -8.95 6.50 -513.88 -3.34 -12.29 16 17 C 0.07 0.65 5.69 86.30 0.49 1.14 16 18 C -0.11 -1.23 5.84 30.60 0.18 -1.05 16 19 C 0.06 0.56 5.79 71.98 0.42 0.98 16 20 O -0.40 -5.64 9.98 -148.98 -1.49 -7.13 16 21 C 0.05 0.47 3.59 31.61 0.11 0.58 16 22 H 0.10 0.44 7.84 -2.39 -0.02 0.42 16 23 C -0.15 -1.22 6.90 31.61 0.22 -1.01 16 24 C 0.04 0.36 7.63 72.49 0.55 0.91 16 25 O -0.41 -6.62 11.66 -148.98 -1.74 -8.35 16 26 C 0.02 0.20 7.40 72.49 0.54 0.73 16 27 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 29 H 0.12 3.87 8.14 -2.40 -0.02 3.85 16 30 H 0.42 6.27 8.47 -92.71 -0.79 5.48 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.35 4.26 8.73 -89.69 -0.78 3.47 16 36 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.43 8.11 -2.39 -0.02 0.41 16 41 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.08 0.84 8.00 -2.38 -0.02 0.82 16 43 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 Total: -1.00 -78.35 402.58 -2.88 -81.23 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -0.65 Total: 12.86 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 5.80 Total: -5.11 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -5.61 Total: -86.11 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -3.27 Total: -39.74 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.90 Total: 46.92 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.05 Total: -10.04 kcal Total: -78.35 -2.88 -81.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123798838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.529 kcal (2) G-P(sol) polarization free energy of solvation -78.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds