Wall clock time and date at job start Tue Mar 31 2020 16:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46661 * 239.99906 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47355 * 119.99761 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 N 1.46896 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.46903 * 111.00106 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47146 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47032 * 179.97438 * 18 17 16 20 20 O 1.42902 * 109.47233 * 180.02562 * 19 18 17 21 21 C 1.42899 * 114.00297 * 180.02562 * 20 19 18 22 22 H 1.09003 * 110.74831 * 32.01609 * 21 20 19 23 23 C 1.55302 * 110.84957 * 155.71421 * 21 20 19 24 24 C 1.54950 * 100.94019 * 152.32214 * 23 21 20 25 25 O 1.43649 * 105.13638 * 323.55592 * 24 23 21 26 26 C 1.43236 * 109.97075 * 24.42760 * 25 24 23 27 27 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 29 29 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 34 34 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 35 35 H 1.00898 * 111.00589 * 56.04557 * 16 15 14 36 36 H 1.08999 * 109.46866 * 299.99546 * 17 16 15 37 37 H 1.09000 * 109.47494 * 59.99570 * 17 16 15 38 38 H 1.08999 * 109.47176 * 299.99734 * 18 17 16 39 39 H 1.09000 * 109.46966 * 59.99625 * 18 17 16 40 40 H 1.09005 * 109.47538 * 300.00484 * 19 18 17 41 41 H 1.09000 * 109.47187 * 60.00207 * 19 18 17 42 42 H 1.09003 * 111.12659 * 270.24067 * 23 21 20 43 43 H 1.08992 * 111.12564 * 34.40511 * 23 21 20 44 44 H 1.09000 * 110.30973 * 204.63893 * 24 23 21 45 45 H 1.09004 * 110.39131 * 82.51356 * 24 23 21 46 46 H 1.08998 * 109.82706 * 238.77220 * 26 25 24 47 47 H 1.09002 * 109.90115 * 117.84668 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 7 2.9876 -10.0741 -0.0148 17 6 4.0873 -11.0481 -0.0191 18 6 3.5128 -12.4661 -0.0248 19 6 4.6582 -13.4804 -0.0299 20 8 4.1216 -14.8049 -0.0359 21 6 5.1132 -15.8338 -0.0404 22 1 6.0035 -15.5145 0.5015 23 6 4.5442 -17.1524 0.5506 24 6 5.4157 -18.2033 -0.1823 25 8 5.6106 -17.6734 -1.5032 26 6 5.4682 -16.2483 -1.4846 27 1 -0.4849 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 0.0015 31 1 1.7226 -7.8789 0.8860 32 1 1.7214 -7.8714 -0.8939 33 1 4.1107 -8.5346 -0.8984 34 1 4.1120 -8.5422 0.8815 35 1 2.3678 -10.2248 -0.7966 36 1 4.7000 -10.9003 -0.9085 37 1 4.7000 -10.9082 0.8715 38 1 2.9004 -12.6136 0.8647 39 1 2.8998 -12.6062 -0.9152 40 1 5.2704 -13.3328 -0.9197 41 1 5.2714 -13.3405 0.8603 42 1 4.6976 -17.1980 1.6288 43 1 3.4903 -17.2726 0.3002 44 1 4.8944 -19.1593 -0.2313 45 1 6.3741 -18.3212 0.3233 46 1 4.6694 -15.9477 -2.1625 47 1 6.4045 -15.7778 -1.7848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123798839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:19 Heat of formation + Delta-G solvation = -136.731714 kcal Electronic energy + Delta-G solvation = -24114.521317 eV Core-core repulsion = 20230.319792 eV Total energy + Delta-G solvation = -3884.201525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.24587 -39.21562 -38.15691 -37.09509 -34.69509 -32.80621 -32.42835 -31.57790 -29.91730 -29.26716 -27.58703 -25.49527 -24.66717 -23.05791 -22.49485 -22.18634 -21.62701 -20.36621 -18.01153 -17.85184 -17.23271 -16.79871 -16.40564 -16.28375 -15.91956 -15.81080 -15.46231 -15.08839 -14.85780 -14.80032 -14.21388 -14.11445 -14.01531 -13.82490 -13.57005 -13.14591 -13.08793 -12.62854 -12.56094 -12.24564 -12.17729 -12.03736 -11.82704 -11.65615 -11.53885 -11.34891 -11.29708 -11.04690 -11.03905 -10.77078 -10.22924 -10.10144 -9.82750 -9.43006 -9.06490 -8.92002 -8.89588 -8.24058 -6.50120 -6.21514 -3.92307 2.72236 2.99583 3.09681 3.23346 3.25904 3.28943 3.34084 3.59375 3.77844 4.04524 4.20499 4.21520 4.27544 4.39551 4.48937 4.56679 4.61465 4.66774 4.74294 4.81791 4.88741 4.98369 5.02168 5.08036 5.11867 5.13521 5.15759 5.18775 5.21342 5.26411 5.36521 5.59532 5.60746 5.68118 5.75092 5.88682 5.91123 6.13114 6.32552 6.46496 6.56990 6.61842 6.90490 7.59053 7.68333 8.34895 8.60554 9.23569 10.85922 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.059838 B = 0.001133 C = 0.001122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.818591 B =24712.904768 C =24946.879719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.050 3.950 16 N -0.686 5.686 17 C 0.064 3.936 18 C -0.118 4.118 19 C 0.061 3.939 20 O -0.369 6.369 21 C 0.056 3.944 22 H 0.079 0.921 23 C -0.153 4.153 24 C 0.050 3.950 25 O -0.380 6.380 26 C 0.027 3.973 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.397 0.603 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.346 0.654 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.081 0.919 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.097 -33.715 0.265 36.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.395 5.395 14 C -0.002 4.002 15 C -0.079 4.079 16 N -0.318 5.318 17 C -0.066 4.066 18 C -0.156 4.156 19 C -0.016 4.016 20 O -0.288 6.288 21 C -0.002 4.002 22 H 0.097 0.903 23 C -0.191 4.191 24 C -0.026 4.026 25 O -0.299 6.299 26 C -0.050 4.050 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.165 0.835 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.099 0.901 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.674 -34.117 0.769 36.403 hybrid contribution 3.073 1.648 -0.735 3.563 sum 15.747 -32.469 0.034 36.086 Atomic orbital electron populations 1.70007 1.05962 1.27586 1.46742 1.24986 0.95013 0.99000 0.94502 0.86229 0.79246 0.81258 0.78791 1.19951 1.20789 1.19930 1.22833 0.94879 0.91697 1.59125 0.90981 1.85410 1.04884 0.96273 1.96722 1.23531 1.06597 0.95344 1.04924 1.20302 0.86508 0.86233 0.75169 1.90711 1.15348 1.85573 1.47318 1.45897 1.09936 1.05444 1.78194 1.21137 0.95691 0.80351 1.03057 1.22094 0.96633 0.87901 1.01314 1.60247 1.18842 1.02028 1.50651 1.21813 0.92969 0.90805 1.00970 1.21464 0.97770 0.91957 1.04409 1.22545 0.96516 0.82086 1.00410 1.87952 1.32020 1.14033 1.94813 1.23676 0.92045 0.89101 0.95420 0.90270 1.23322 1.01903 0.92562 1.01294 1.23370 0.98761 0.97451 0.82997 1.88447 1.93100 1.19617 1.28761 1.23676 1.01761 0.81913 0.97633 0.92108 0.89186 0.89238 0.76925 0.90611 0.91768 0.94492 0.90232 0.83550 0.94920 0.90624 0.89838 0.90929 0.93170 0.92849 0.89114 0.88990 0.89066 0.91790 0.90085 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.91 7.85 -10.98 -0.09 9.83 16 12 O -0.52 -11.82 15.86 5.55 0.09 -11.73 16 13 N -0.74 -9.63 5.56 -60.30 -0.33 -9.97 16 14 C 0.12 1.39 5.93 -4.04 -0.02 1.37 16 15 C 0.05 0.40 5.80 -3.83 -0.02 0.38 16 16 N -0.69 -5.15 6.50 -113.78 -0.74 -5.89 16 17 C 0.06 0.37 5.69 -3.82 -0.02 0.35 16 18 C -0.12 -0.69 5.84 -26.73 -0.16 -0.84 16 19 C 0.06 0.32 5.81 37.16 0.22 0.54 16 20 O -0.37 -2.60 10.08 -35.23 -0.36 -2.95 16 21 C 0.06 0.30 3.45 -24.79 -0.09 0.22 16 22 H 0.08 0.32 7.89 -51.93 -0.41 -0.09 16 23 C -0.15 -0.70 6.89 -24.48 -0.17 -0.87 16 24 C 0.05 0.24 7.78 38.19 0.30 0.54 16 25 O -0.38 -2.96 11.36 -35.23 -0.40 -3.36 16 26 C 0.03 0.17 7.58 37.88 0.29 0.46 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 29 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 30 H 0.40 3.90 8.47 -40.82 -0.35 3.55 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.35 2.41 8.73 -39.29 -0.34 2.07 16 36 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.05 0.23 8.11 -51.93 -0.42 -0.19 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 0.54 8.05 -51.93 -0.42 0.12 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -35.67 405.43 -9.72 -45.39 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.25 Total: -0.74 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 0.66 Total: -3.87 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.34 Total: -41.33 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.67 Total: -18.04 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.67 -9.72 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123798839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.342 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds