Wall clock time and date at job start Tue Mar 31 2020 16:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48505 * 109.46661 * 239.99906 * 3 2 1 5 5 H 1.48501 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47355 * 119.99761 * 3 2 1 7 7 C 1.38803 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99773 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99715 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47389 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.52996 * 109.47059 * 179.72339 * 14 13 11 16 16 N 1.46896 * 109.47256 * 180.02562 * 15 14 13 17 17 C 1.46903 * 111.00106 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47146 * 179.97438 * 17 16 15 19 19 C 1.52995 * 109.47032 * 179.97438 * 18 17 16 20 20 O 1.42902 * 109.47233 * 180.02562 * 19 18 17 21 21 C 1.42899 * 114.00297 * 180.02562 * 20 19 18 22 22 H 1.09003 * 110.74831 * 32.01609 * 21 20 19 23 23 C 1.55302 * 110.84957 * 155.71421 * 21 20 19 24 24 C 1.54950 * 100.94019 * 152.32214 * 23 21 20 25 25 O 1.43649 * 105.13638 * 323.55592 * 24 23 21 26 26 C 1.43236 * 109.97075 * 24.42760 * 25 24 23 27 27 H 0.96991 * 119.99795 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47444 * 59.99749 * 10 9 7 29 29 H 1.09002 * 109.47411 * 300.00028 * 10 9 7 30 30 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 31 31 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 32 32 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 33 33 H 1.09004 * 109.47066 * 299.99732 * 15 14 13 34 34 H 1.09000 * 109.47665 * 59.99541 * 15 14 13 35 35 H 1.00898 * 111.00589 * 56.04557 * 16 15 14 36 36 H 1.08999 * 109.46866 * 299.99546 * 17 16 15 37 37 H 1.09000 * 109.47494 * 59.99570 * 17 16 15 38 38 H 1.08999 * 109.47176 * 299.99734 * 18 17 16 39 39 H 1.09000 * 109.46966 * 59.99625 * 18 17 16 40 40 H 1.09005 * 109.47538 * 300.00484 * 19 18 17 41 41 H 1.09000 * 109.47187 * 60.00207 * 19 18 17 42 42 H 1.09003 * 111.12659 * 270.24067 * 23 21 20 43 43 H 1.08992 * 111.12564 * 34.40511 * 23 21 20 44 44 H 1.09000 * 110.30973 * 204.63893 * 24 23 21 45 45 H 1.09004 * 110.39131 * 82.51356 * 24 23 21 46 46 H 1.08998 * 109.82706 * 238.77220 * 26 25 24 47 47 H 1.09002 * 109.90115 * 117.84668 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9876 -5.3027 0.0012 12 8 0.7913 -5.5023 0.0021 13 7 2.8444 -6.3431 0.0018 14 6 2.3306 -7.7150 -0.0037 15 6 3.5027 -8.6985 -0.0087 16 7 2.9876 -10.0741 -0.0148 17 6 4.0873 -11.0481 -0.0191 18 6 3.5128 -12.4661 -0.0248 19 6 4.6582 -13.4804 -0.0299 20 8 4.1216 -14.8049 -0.0359 21 6 5.1132 -15.8338 -0.0404 22 1 6.0035 -15.5145 0.5015 23 6 4.5442 -17.1524 0.5506 24 6 5.4157 -18.2033 -0.1823 25 8 5.6106 -17.6734 -1.5032 26 6 5.4682 -16.2483 -1.4846 27 1 -0.4849 0.8400 -0.0004 28 1 3.1246 -3.7313 0.8905 29 1 3.1246 -3.7313 -0.8894 30 1 3.8011 -6.1834 0.0015 31 1 1.7226 -7.8789 0.8860 32 1 1.7214 -7.8714 -0.8939 33 1 4.1107 -8.5346 -0.8984 34 1 4.1120 -8.5422 0.8815 35 1 2.3678 -10.2248 -0.7966 36 1 4.7000 -10.9003 -0.9085 37 1 4.7000 -10.9082 0.8715 38 1 2.9004 -12.6136 0.8647 39 1 2.8998 -12.6062 -0.9152 40 1 5.2704 -13.3328 -0.9197 41 1 5.2714 -13.3405 0.8603 42 1 4.6976 -17.1980 1.6288 43 1 3.4903 -17.2726 0.3002 44 1 4.8944 -19.1593 -0.2313 45 1 6.3741 -18.3212 0.3233 46 1 4.6694 -15.9477 -2.1625 47 1 6.4045 -15.7778 -1.7848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123798839.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:18 Heat of formation + Delta-G solvation = -165.023407 kcal Electronic energy + Delta-G solvation = -24115.748137 eV Core-core repulsion = 20230.319792 eV Total energy + Delta-G solvation = -3885.428345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.67595 -40.61824 -38.65224 -37.76758 -35.75735 -34.57705 -33.47178 -32.14493 -31.14378 -29.76724 -28.54936 -27.61649 -25.28217 -23.46070 -23.17156 -22.65651 -22.12662 -21.76089 -19.83200 -18.43078 -17.85901 -17.64525 -17.39009 -17.22269 -16.86998 -16.73210 -16.58657 -16.13186 -15.95645 -15.79580 -15.31862 -15.10064 -14.80611 -14.56946 -14.46771 -14.29400 -14.02578 -13.75815 -13.45499 -13.16381 -13.09542 -12.85718 -12.64740 -12.62972 -12.59027 -12.43678 -12.35839 -12.14103 -11.80427 -11.73667 -11.71363 -11.12080 -10.99578 -10.66003 -10.53364 -10.27169 -10.14099 -9.45753 -8.66389 -8.33758 -6.12245 1.27062 1.44797 1.47360 1.56916 1.60883 2.15534 2.28532 2.41659 2.94042 3.00463 3.27840 3.39629 3.41981 3.81420 3.84930 3.92263 3.99371 4.03561 4.08150 4.15423 4.20841 4.24064 4.31750 4.36374 4.46798 4.50849 4.51838 4.54906 4.62362 4.69926 4.74562 4.78460 4.89003 4.91901 4.93192 5.01244 5.15502 5.22990 5.40395 5.42370 5.91530 5.95743 6.18011 6.20359 6.34871 6.50106 7.07413 7.24358 8.75362 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.059838 B = 0.001133 C = 0.001122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.818591 B =24712.904768 C =24946.879719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.711 5.711 14 C 0.123 3.877 15 C 0.064 3.936 16 N -0.699 5.699 17 C 0.069 3.931 18 C -0.112 4.112 19 C 0.061 3.939 20 O -0.390 6.390 21 C 0.055 3.945 22 H 0.097 0.903 23 C -0.152 4.152 24 C 0.046 3.954 25 O -0.407 6.407 26 C 0.025 3.975 27 H 0.271 0.729 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.418 0.582 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.348 0.652 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.348 -34.050 0.565 38.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.366 5.366 14 C -0.001 4.001 15 C -0.066 4.066 16 N -0.332 5.332 17 C -0.060 4.060 18 C -0.151 4.151 19 C -0.016 4.016 20 O -0.310 6.310 21 C -0.003 4.003 22 H 0.115 0.885 23 C -0.189 4.189 24 C -0.029 4.029 25 O -0.327 6.327 26 C -0.052 4.052 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.255 0.745 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.166 0.834 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.117 0.883 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.990 -34.497 1.070 38.038 hybrid contribution 2.091 1.584 -0.828 2.751 sum 18.082 -32.913 0.242 37.553 Atomic orbital electron populations 1.70180 1.08034 1.28692 1.47965 1.26128 0.95927 1.03320 0.93671 0.85008 0.77808 0.75672 0.79531 1.18609 1.20453 1.18602 1.23188 0.95394 0.91983 1.59003 0.89791 1.85612 1.10681 0.99316 1.97071 1.23369 1.03520 0.94151 1.06968 1.20092 0.86208 0.86754 0.75110 1.90701 1.17546 1.86128 1.50120 1.45594 1.10393 1.04978 1.75618 1.21214 0.97139 0.79903 1.01847 1.21945 0.94940 0.87138 1.02564 1.60235 1.19748 1.02114 1.51071 1.21800 0.92451 0.90017 1.01757 1.21384 0.97856 0.92439 1.03371 1.22607 0.96290 0.81241 1.01472 1.87927 1.33192 1.14932 1.94920 1.23782 0.92428 0.89029 0.95103 0.88505 1.23333 1.01107 0.92205 1.02268 1.23552 0.99719 0.97687 0.81980 1.88407 1.93262 1.20463 1.30599 1.23720 1.01926 0.81460 0.98101 0.91989 0.87030 0.87005 0.74518 0.92387 0.92578 0.92858 0.89227 0.83377 0.93752 0.90038 0.91280 0.91579 0.92137 0.91656 0.87427 0.90229 0.88298 0.90249 0.91323 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.14 13.22 21.65 0.29 -55.86 16 2 C 0.01 0.81 5.49 84.86 0.47 1.28 16 3 Si 1.00 43.27 29.55 68.60 2.03 45.29 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.55 -31.16 9.50 67.96 0.65 -30.51 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.71 16 10 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 11 C 0.53 19.45 7.85 87.66 0.69 20.14 16 12 O -0.57 -26.51 15.86 -3.04 -0.05 -26.55 16 13 N -0.71 -17.05 5.56 -463.07 -2.57 -19.62 16 14 C 0.12 2.64 5.93 86.38 0.51 3.16 16 15 C 0.06 0.84 5.80 86.30 0.50 1.34 16 16 N -0.70 -9.25 6.50 -513.88 -3.34 -12.59 16 17 C 0.07 0.64 5.69 86.30 0.49 1.13 16 18 C -0.11 -1.17 5.84 30.59 0.18 -1.00 16 19 C 0.06 0.54 5.81 71.98 0.42 0.96 16 20 O -0.39 -5.13 10.08 -148.98 -1.50 -6.63 16 21 C 0.05 0.53 3.45 31.85 0.11 0.64 16 22 H 0.10 0.57 7.89 -2.39 -0.02 0.55 16 23 C -0.15 -1.24 6.89 32.05 0.22 -1.01 16 24 C 0.05 0.39 7.78 72.65 0.56 0.96 16 25 O -0.41 -6.17 11.36 -148.98 -1.69 -7.87 16 26 C 0.02 0.29 7.58 72.45 0.55 0.84 16 27 H 0.27 15.51 8.31 -92.72 -0.77 14.74 16 28 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 29 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 30 H 0.42 6.75 8.47 -92.71 -0.79 5.97 16 31 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.35 4.41 8.73 -89.70 -0.78 3.63 16 36 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.07 0.42 8.11 -2.39 -0.02 0.40 16 42 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.07 0.93 8.05 -2.39 -0.02 0.91 16 47 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -79.87 405.43 -2.83 -82.70 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -0.61 Total: 17.49 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.78 Total: -6.66 kcal Atomic # 7 Polarization: -82.44 SS G_CDS: -5.63 Total: -88.07 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -3.24 Total: -41.05 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.71 kcal Total: -79.87 -2.83 -82.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123798839.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.323 kcal (2) G-P(sol) polarization free energy of solvation -79.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds