Wall clock time and date at job start Tue Mar 31 2020 16:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30007 * 127.39646 * 2 1 4 4 O 1.20863 * 113.52650 * 180.02562 * 3 2 1 5 5 C 1.34446 * 113.07062 * 0.02562 * 4 3 2 6 6 N 1.32337 * 134.98368 * 179.97438 * 5 4 3 7 7 C 1.31473 * 121.77680 * 180.02562 * 6 5 4 8 8 C 1.40017 * 121.52109 * 0.02562 * 7 6 5 9 9 C 1.47712 * 120.49729 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99748 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00081 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99607 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47605 * 34.99616 * 12 11 9 14 14 C 1.53005 * 109.47295 * 274.99588 * 12 11 9 15 15 C 1.53006 * 109.47329 * 155.00046 * 12 11 9 16 16 C 1.52997 * 109.46841 * 295.00084 * 15 12 11 17 17 H 1.09005 * 109.47159 * 54.99606 * 16 15 12 18 18 C 1.52999 * 109.47264 * 174.99605 * 16 15 12 19 19 N 1.46498 * 109.47167 * 294.99436 * 16 15 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 C 1.39898 * 118.99913 * 0.24654 * 8 7 6 29 29 C 1.38667 * 117.70522 * 359.47432 * 28 8 7 30 30 H 1.09002 * 109.47690 * 269.97773 * 1 2 3 31 31 H 1.09007 * 109.47488 * 29.97486 * 1 2 3 32 32 H 1.09001 * 109.47392 * 149.97651 * 1 2 3 33 33 H 1.08003 * 119.23443 * 180.02562 * 7 6 5 34 34 H 0.97002 * 120.00356 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46484 * 60.00332 * 14 12 11 36 36 H 1.08994 * 109.47185 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.47043 * 300.01013 * 14 12 11 38 38 H 1.08996 * 109.47489 * 174.99502 * 15 12 11 39 39 H 1.09001 * 109.46720 * 54.99468 * 15 12 11 40 40 H 1.08994 * 109.47102 * 299.99987 * 18 16 15 41 41 H 1.09005 * 109.47033 * 59.99923 * 18 16 15 42 42 H 1.08994 * 109.47214 * 179.97438 * 18 16 15 43 43 H 0.97004 * 119.99747 * 335.00715 * 19 16 15 44 44 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 45 45 H 1.07994 * 121.15050 * 179.72253 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2965 1.0328 0.0000 4 8 3.4699 0.7431 -0.0005 5 6 3.6849 -0.5840 -0.0015 6 7 4.7584 -1.3578 -0.0027 7 6 4.6666 -2.6694 -0.0040 8 6 3.4248 -3.3162 -0.0046 9 6 3.3479 -4.7913 -0.0066 10 8 2.2649 -5.3435 -0.0067 11 7 4.4784 -5.5250 -0.0084 12 6 4.4021 -6.9880 -0.0109 13 1 3.5422 -7.3060 -0.6005 14 6 4.2506 -7.4934 1.4253 15 6 5.6809 -7.5645 -0.6221 16 6 5.7687 -7.1612 -2.0953 17 1 5.6969 -6.0768 -2.1801 18 6 7.1051 -7.6305 -2.6738 19 7 4.6698 -7.7830 -2.8382 20 6 4.2183 -7.2124 -3.9982 21 1 4.6727 -6.3041 -4.3658 22 6 3.1767 -7.8012 -4.7019 23 7 2.6266 -8.9111 -4.2568 24 14 2.5613 -7.0233 -6.2847 25 1 1.4559 -7.8433 -6.8423 26 1 2.0666 -5.6518 -6.0024 27 1 3.6723 -6.9562 -7.2678 28 6 2.2580 -2.5444 -0.0092 29 6 2.3976 -1.1648 -0.0016 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 5.5699 -3.2614 -0.0045 34 1 5.3426 -5.0845 -0.0087 35 1 3.3396 -7.0828 1.8607 36 1 4.1943 -8.5819 1.4234 37 1 5.1104 -7.1753 2.0150 38 1 5.6634 -8.6514 -0.5433 39 1 6.5469 -7.1753 -0.0866 40 1 7.9228 -7.1679 -2.1211 41 1 7.1770 -8.7148 -2.5890 42 1 7.1675 -7.3435 -3.7234 43 1 4.2619 -8.5989 -2.5082 44 1 2.9464 -9.3154 -3.4351 45 1 1.2822 -3.0070 -0.0143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135144023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:22 Heat of formation + Delta-G solvation = 62.607407 kcal Electronic energy + Delta-G solvation = -28469.541803 eV Core-core repulsion = 24490.833070 eV Total energy + Delta-G solvation = -3978.708733 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.04364 -40.57115 -39.04318 -37.00606 -35.25263 -34.73663 -32.82210 -32.37968 -31.76315 -30.45771 -29.07981 -28.34285 -26.47357 -25.81105 -24.52411 -23.45112 -22.09913 -21.42890 -20.75192 -19.97986 -18.74730 -18.39414 -18.14556 -17.37893 -17.10079 -16.26344 -15.72252 -15.11157 -14.80867 -14.37007 -14.16078 -14.09412 -13.88084 -13.66985 -13.59436 -13.59099 -13.48638 -13.19982 -13.17786 -13.03642 -12.23158 -12.17277 -11.86370 -11.75586 -11.75029 -11.24673 -11.09483 -10.76916 -10.55009 -10.50845 -10.29654 -10.15353 -9.95644 -9.73151 -9.67591 -9.46451 -9.14861 -8.92569 -8.88965 -7.01009 -6.06391 -3.06180 0.18245 0.20744 1.72054 1.91490 2.63026 3.04295 3.45937 3.48299 3.52342 3.55785 3.69266 3.73001 4.00501 4.24839 4.38266 4.57874 4.64639 4.69109 4.96380 5.06287 5.08164 5.17085 5.25402 5.32141 5.35692 5.52060 5.54721 5.62318 5.63003 5.74755 5.78096 5.80947 5.88295 5.99544 6.16573 6.22169 6.31384 6.42569 6.51235 6.62979 6.79203 6.97011 7.05920 7.52020 7.82542 7.82729 8.23726 8.78880 9.25528 10.11637 10.26003 11.41971 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010439 B = 0.003528 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.546663 B = 7934.057187 C = 9168.469573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.073 3.927 3 N -0.318 5.318 4 O 0.083 5.917 5 C 0.228 3.772 6 N -0.462 5.462 7 C 0.195 3.805 8 C -0.194 4.194 9 C 0.569 3.431 10 O -0.522 6.522 11 N -0.708 5.708 12 C 0.145 3.855 13 H 0.105 0.895 14 C -0.162 4.162 15 C -0.134 4.134 16 C 0.177 3.823 17 H 0.047 0.953 18 C -0.166 4.166 19 N -0.732 5.732 20 C -0.327 4.327 21 H 0.061 0.939 22 C -0.042 4.042 23 N -0.943 5.943 24 Si 1.075 2.925 25 H -0.285 1.285 26 H -0.297 1.297 27 H -0.296 1.296 28 C 0.066 3.934 29 C -0.227 4.227 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.179 0.821 34 H 0.394 0.606 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.366 0.634 44 H 0.255 0.745 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.654 13.155 13.909 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 N -0.026 5.026 4 O 0.027 5.973 5 C 0.046 3.954 6 N -0.178 5.178 7 C 0.029 3.971 8 C -0.200 4.200 9 C 0.353 3.647 10 O -0.398 6.398 11 N -0.359 5.359 12 C 0.041 3.959 13 H 0.123 0.877 14 C -0.220 4.220 15 C -0.172 4.172 16 C 0.067 3.933 17 H 0.065 0.935 18 C -0.226 4.226 19 N -0.375 5.375 20 C -0.458 4.458 21 H 0.079 0.921 22 C -0.240 4.240 23 N -0.588 5.588 24 Si 0.906 3.094 25 H -0.210 1.210 26 H -0.225 1.225 27 H -0.224 1.224 28 C 0.038 3.962 29 C -0.232 4.232 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.196 0.804 34 H 0.228 0.772 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.199 0.801 44 H 0.066 0.934 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.512 14.591 12.561 19.312 hybrid contribution 0.873 -0.955 1.187 1.756 sum 2.385 13.636 13.748 19.510 Atomic orbital electron populations 1.20310 0.84240 1.04873 1.04212 1.24334 0.98454 0.86583 1.00293 1.73500 0.88687 1.23115 1.17322 1.84899 1.20152 1.19346 1.72919 1.21748 0.90524 0.86326 0.96771 1.66404 1.29894 1.04924 1.16602 1.23085 0.97202 0.87718 0.89073 1.21061 0.94562 0.95584 1.08818 1.17607 0.84887 0.85196 0.76969 1.90831 1.27731 1.72305 1.48929 1.45857 1.07754 1.07700 1.74604 1.21078 1.00930 0.77744 0.96110 0.87722 1.22192 1.01703 1.01523 0.96588 1.22213 0.95917 1.01565 0.97533 1.20164 0.88266 0.96427 0.88488 0.93528 1.22444 0.98082 1.00669 1.01380 1.42403 1.38665 1.29576 1.26826 1.19945 1.16525 1.08336 1.00965 0.92119 1.25647 0.96048 0.98024 1.04303 1.70879 1.44264 1.19886 1.23817 0.83310 0.76110 0.74744 0.75204 1.21018 1.22464 1.22371 1.20977 1.00117 0.89284 0.85859 1.20887 0.94658 0.95649 1.12048 0.89177 0.89540 0.89064 0.80398 0.77158 0.92370 0.91567 0.92883 0.90528 0.91698 0.94516 0.93644 0.92811 0.80100 0.93407 0.82038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.50 36.00 0.38 -0.15 16 2 C 0.07 0.77 7.58 -79.98 -0.61 0.17 16 3 N -0.32 -3.88 11.94 34.92 0.42 -3.46 16 4 O 0.08 1.08 11.12 16.10 0.18 1.26 16 5 C 0.23 2.95 8.75 -16.20 -0.14 2.81 16 6 N -0.46 -5.75 10.36 -12.61 -0.13 -5.88 16 7 C 0.19 2.09 10.68 -17.04 -0.18 1.91 16 8 C -0.19 -2.41 5.90 -104.74 -0.62 -3.03 16 9 C 0.57 8.47 7.74 -12.39 -0.10 8.38 16 10 O -0.52 -9.90 16.08 5.31 0.09 -9.81 16 11 N -0.71 -9.13 4.40 -54.79 -0.24 -9.37 16 12 C 0.15 2.11 2.52 -67.93 -0.17 1.94 16 13 H 0.10 2.04 7.05 -51.93 -0.37 1.68 16 14 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 15 C -0.13 -1.85 4.29 -26.73 -0.11 -1.96 16 16 C 0.18 3.17 2.84 -67.93 -0.19 2.98 16 17 H 0.05 0.86 7.56 -51.93 -0.39 0.47 16 18 C -0.17 -2.79 9.49 37.16 0.35 -2.44 16 19 N -0.73 -17.27 4.49 -53.43 -0.24 -17.51 16 20 C -0.33 -8.97 9.93 -15.06 -0.15 -9.12 16 21 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 22 C -0.04 -1.23 5.50 -17.43 -0.10 -1.32 16 23 N -0.94 -29.04 13.70 55.49 0.76 -28.28 16 24 Si 1.07 26.27 29.92 -169.99 -5.09 21.19 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.30 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 28 C 0.07 0.79 9.75 -38.80 -0.38 0.41 16 29 C -0.23 -2.70 6.55 -105.22 -0.69 -3.39 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.18 1.29 6.39 -52.48 -0.34 0.95 16 34 H 0.39 3.77 6.65 -40.82 -0.27 3.50 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.37 9.03 6.63 -40.82 -0.27 8.76 16 44 H 0.25 7.69 6.77 -40.82 -0.28 7.41 16 45 H 0.16 1.78 7.74 -52.49 -0.41 1.37 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -34.96 381.02 -7.04 -42.00 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.18 Total: 8.56 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.35 Total: -4.43 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: 0.57 Total: -64.51 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.26 Total: -8.55 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -5.09 Total: 21.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.96 -7.04 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135144023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.606 kcal (2) G-P(sol) polarization free energy of solvation -34.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds