Wall clock time and date at job start Tue Mar 31 2020 16:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30007 * 127.39646 * 2 1 4 4 O 1.20863 * 113.52650 * 180.02562 * 3 2 1 5 5 C 1.34446 * 113.07062 * 0.02562 * 4 3 2 6 6 N 1.32337 * 134.98368 * 179.97438 * 5 4 3 7 7 C 1.31473 * 121.77680 * 180.02562 * 6 5 4 8 8 C 1.40017 * 121.52109 * 0.02562 * 7 6 5 9 9 C 1.47712 * 120.49729 * 179.97438 * 8 7 6 10 10 O 1.21568 * 119.99748 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00081 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99607 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.47605 * 34.99616 * 12 11 9 14 14 C 1.53005 * 109.47295 * 274.99588 * 12 11 9 15 15 C 1.53006 * 109.47329 * 155.00046 * 12 11 9 16 16 C 1.52997 * 109.46841 * 295.00084 * 15 12 11 17 17 H 1.09005 * 109.47159 * 54.99606 * 16 15 12 18 18 C 1.52999 * 109.47264 * 174.99605 * 16 15 12 19 19 N 1.46498 * 109.47167 * 294.99436 * 16 15 12 20 20 C 1.36935 * 120.00239 * 154.99975 * 19 16 15 21 21 H 1.08004 * 120.00069 * 0.02562 * 20 19 16 22 22 C 1.38811 * 120.00368 * 180.02562 * 20 19 16 23 23 N 1.31624 * 119.99540 * 359.72375 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47364 * 179.72253 * 24 22 20 26 26 H 1.48508 * 109.46883 * 299.72375 * 24 22 20 27 27 H 1.48497 * 109.46870 * 59.72186 * 24 22 20 28 28 C 1.39898 * 118.99913 * 0.24654 * 8 7 6 29 29 C 1.38667 * 117.70522 * 359.47432 * 28 8 7 30 30 H 1.09002 * 109.47690 * 269.97773 * 1 2 3 31 31 H 1.09007 * 109.47488 * 29.97486 * 1 2 3 32 32 H 1.09001 * 109.47392 * 149.97651 * 1 2 3 33 33 H 1.08003 * 119.23443 * 180.02562 * 7 6 5 34 34 H 0.97002 * 120.00356 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46484 * 60.00332 * 14 12 11 36 36 H 1.08994 * 109.47185 * 180.02562 * 14 12 11 37 37 H 1.08999 * 109.47043 * 300.01013 * 14 12 11 38 38 H 1.08996 * 109.47489 * 174.99502 * 15 12 11 39 39 H 1.09001 * 109.46720 * 54.99468 * 15 12 11 40 40 H 1.08994 * 109.47102 * 299.99987 * 18 16 15 41 41 H 1.09005 * 109.47033 * 59.99923 * 18 16 15 42 42 H 1.08994 * 109.47214 * 179.97438 * 18 16 15 43 43 H 0.97004 * 119.99747 * 335.00715 * 19 16 15 44 44 H 0.97000 * 120.00481 * 0.27542 * 23 22 20 45 45 H 1.07994 * 121.15050 * 179.72253 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2965 1.0328 0.0000 4 8 3.4699 0.7431 -0.0005 5 6 3.6849 -0.5840 -0.0015 6 7 4.7584 -1.3578 -0.0027 7 6 4.6666 -2.6694 -0.0040 8 6 3.4248 -3.3162 -0.0046 9 6 3.3479 -4.7913 -0.0066 10 8 2.2649 -5.3435 -0.0067 11 7 4.4784 -5.5250 -0.0084 12 6 4.4021 -6.9880 -0.0109 13 1 3.5422 -7.3060 -0.6005 14 6 4.2506 -7.4934 1.4253 15 6 5.6809 -7.5645 -0.6221 16 6 5.7687 -7.1612 -2.0953 17 1 5.6969 -6.0768 -2.1801 18 6 7.1051 -7.6305 -2.6738 19 7 4.6698 -7.7830 -2.8382 20 6 4.2183 -7.2124 -3.9982 21 1 4.6727 -6.3041 -4.3658 22 6 3.1767 -7.8012 -4.7019 23 7 2.6266 -8.9111 -4.2568 24 14 2.5613 -7.0233 -6.2847 25 1 1.4559 -7.8433 -6.8423 26 1 2.0666 -5.6518 -6.0024 27 1 3.6723 -6.9562 -7.2678 28 6 2.2580 -2.5444 -0.0092 29 6 2.3976 -1.1648 -0.0016 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 5.5699 -3.2614 -0.0045 34 1 5.3426 -5.0845 -0.0087 35 1 3.3396 -7.0828 1.8607 36 1 4.1943 -8.5819 1.4234 37 1 5.1104 -7.1753 2.0150 38 1 5.6634 -8.6514 -0.5433 39 1 6.5469 -7.1753 -0.0866 40 1 7.9228 -7.1679 -2.1211 41 1 7.1770 -8.7148 -2.5890 42 1 7.1675 -7.3435 -3.7234 43 1 4.2619 -8.5989 -2.5082 44 1 2.9464 -9.3154 -3.4351 45 1 1.2822 -3.0070 -0.0143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135144023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:21 Heat of formation + Delta-G solvation = 37.181315 kcal Electronic energy + Delta-G solvation = -28470.644361 eV Core-core repulsion = 24490.833070 eV Total energy + Delta-G solvation = -3979.811291 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.93718 -41.62239 -40.12378 -38.41536 -36.34428 -36.03544 -34.28043 -33.62668 -32.83112 -31.56287 -30.14340 -29.76258 -27.64654 -26.77711 -25.54314 -25.42249 -23.17530 -22.37231 -21.96912 -21.36780 -19.81116 -19.40538 -19.27636 -19.06051 -18.04253 -17.33728 -16.87944 -16.62889 -16.18207 -15.90607 -15.46857 -15.23213 -15.12777 -14.74862 -14.64463 -14.47157 -14.41416 -14.29650 -14.27863 -13.80027 -13.52774 -13.43597 -13.12390 -12.89509 -12.76062 -12.68861 -12.52257 -12.18831 -12.08697 -11.90669 -11.84063 -11.54482 -11.40931 -11.15592 -10.88761 -10.78490 -10.62089 -10.42379 -10.05536 -9.02422 -8.31764 -5.23399 -0.77364 -0.70514 0.85778 1.00438 1.54136 1.56566 1.63615 1.79362 1.97836 2.43789 2.64049 2.71893 2.84021 3.11941 3.39610 3.46326 3.46853 3.59006 3.74838 3.82027 3.89943 4.07872 4.28493 4.34217 4.41767 4.50547 4.59637 4.62150 4.65735 4.69908 4.76136 4.80723 4.85912 4.90289 4.99322 5.05949 5.08916 5.19619 5.31305 5.36812 5.53505 5.57574 5.67130 6.14025 6.46406 6.56982 6.92301 7.14842 7.18935 8.09825 8.19927 9.20638 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010439 B = 0.003528 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2681.546663 B = 7934.057187 C = 9168.469573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.085 3.915 3 N -0.337 5.337 4 O 0.068 5.932 5 C 0.217 3.783 6 N -0.474 5.474 7 C 0.209 3.791 8 C -0.205 4.205 9 C 0.567 3.433 10 O -0.572 6.572 11 N -0.695 5.695 12 C 0.148 3.852 13 H 0.048 0.952 14 C -0.152 4.152 15 C -0.120 4.120 16 C 0.167 3.833 17 H 0.045 0.955 18 C -0.157 4.157 19 N -0.743 5.743 20 C -0.314 4.314 21 H 0.060 0.940 22 C -0.106 4.106 23 N -0.979 5.979 24 Si 1.116 2.884 25 H -0.294 1.294 26 H -0.286 1.286 27 H -0.278 1.278 28 C 0.067 3.933 29 C -0.236 4.236 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.215 0.785 34 H 0.413 0.587 35 H 0.040 0.960 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.025 0.975 43 H 0.357 0.643 44 H 0.244 0.756 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 14.241 14.927 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 N -0.048 5.048 4 O 0.015 5.985 5 C 0.036 3.964 6 N -0.191 5.191 7 C 0.044 3.956 8 C -0.211 4.211 9 C 0.353 3.647 10 O -0.452 6.452 11 N -0.347 5.347 12 C 0.044 3.956 13 H 0.066 0.934 14 C -0.210 4.210 15 C -0.159 4.159 16 C 0.059 3.941 17 H 0.063 0.937 18 C -0.217 4.217 19 N -0.386 5.386 20 C -0.446 4.446 21 H 0.078 0.922 22 C -0.297 4.297 23 N -0.628 5.628 24 Si 0.943 3.057 25 H -0.220 1.220 26 H -0.213 1.213 27 H -0.204 1.204 28 C 0.039 3.961 29 C -0.241 4.241 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.232 0.768 34 H 0.251 0.749 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.188 0.812 44 H 0.055 0.945 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.392 15.721 13.606 21.066 hybrid contribution 0.373 -1.258 0.930 1.609 sum 3.765 14.463 14.537 20.849 Atomic orbital electron populations 1.20547 0.81566 1.05927 1.05777 1.24950 0.99905 0.85547 0.98031 1.73507 0.88617 1.23669 1.19038 1.84878 1.20710 1.19416 1.73473 1.22034 0.91202 0.86576 0.96637 1.66508 1.29808 1.05362 1.17413 1.23588 0.97696 0.87330 0.87026 1.20922 0.95627 0.94118 1.10450 1.17941 0.84544 0.86141 0.76040 1.90810 1.29589 1.73392 1.51413 1.45728 1.08287 1.07166 1.73510 1.20886 0.99218 0.78594 0.96940 0.93358 1.22096 1.02316 1.01694 0.94939 1.22125 0.97177 1.01826 0.94729 1.20490 0.87018 0.95959 0.90595 0.93712 1.22311 0.98538 1.00691 1.00168 1.42619 1.40138 1.29421 1.26382 1.20239 1.15264 1.07546 1.01559 0.92221 1.26861 0.97246 0.98383 1.07243 1.70974 1.45952 1.21638 1.24242 0.82758 0.75918 0.74274 0.72766 1.22044 1.21294 1.20373 1.21096 1.00458 0.89409 0.85131 1.20997 0.94827 0.95774 1.12528 0.87198 0.88367 0.88076 0.76844 0.74894 0.94034 0.91132 0.89614 0.90434 0.86922 0.90140 0.94072 0.95559 0.81159 0.94540 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.50 71.23 0.75 -0.19 16 2 C 0.09 1.72 7.58 45.02 0.34 2.07 16 3 N -0.34 -8.03 11.94 -43.54 -0.52 -8.55 16 4 O 0.07 1.74 11.12 67.80 0.75 2.49 16 5 C 0.22 5.46 8.75 85.35 0.75 6.21 16 6 N -0.47 -11.10 10.36 -307.29 -3.18 -14.28 16 7 C 0.21 4.05 10.68 85.18 0.91 4.96 16 8 C -0.21 -4.90 5.90 -19.94 -0.12 -5.02 16 9 C 0.57 16.67 7.74 86.75 0.67 17.34 16 10 O -0.57 -22.39 16.08 -3.93 -0.06 -22.45 16 11 N -0.70 -16.67 4.40 -445.52 -1.96 -18.63 16 12 C 0.15 4.13 2.52 45.00 0.11 4.24 16 13 H 0.05 1.95 7.05 -2.39 -0.02 1.93 16 14 C -0.15 -3.41 9.48 71.98 0.68 -2.73 16 15 C -0.12 -2.97 4.29 30.60 0.13 -2.84 16 16 C 0.17 5.70 2.84 44.99 0.13 5.82 16 17 H 0.04 1.55 7.56 -2.38 -0.02 1.53 16 18 C -0.16 -4.88 9.49 71.98 0.68 -4.20 16 19 N -0.74 -35.33 4.49 -322.94 -1.45 -36.78 16 20 C -0.31 -17.37 9.93 84.03 0.83 -16.54 16 21 H 0.06 3.26 7.83 -2.91 -0.02 3.23 16 22 C -0.11 -6.21 5.50 84.86 0.47 -5.75 16 23 N -0.98 -62.06 13.70 21.65 0.30 -61.77 16 24 Si 1.12 53.50 29.92 68.60 2.05 55.55 16 25 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 26 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 28 C 0.07 1.58 9.75 22.77 0.22 1.80 16 29 C -0.24 -5.44 6.55 -20.25 -0.13 -5.57 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.22 2.30 6.39 -2.91 -0.02 2.28 16 34 H 0.41 6.44 6.65 -92.71 -0.62 5.83 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.36 18.12 6.63 -92.71 -0.61 17.51 16 44 H 0.24 15.35 6.77 -92.71 -0.63 14.72 16 45 H 0.17 3.67 7.74 -2.91 -0.02 3.65 16 Total: -1.00 -79.73 381.02 2.30 -77.43 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.05 Total: 27.38 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 6.43 Total: -0.39 kcal Atomic # 7 Polarization: -133.20 SS G_CDS: -6.82 Total: -140.01 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.69 Total: -19.96 kcal Atomic # 14 Polarization: 53.50 SS G_CDS: 2.05 Total: 55.55 kcal Total: -79.73 2.30 -77.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135144023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.611 kcal (2) G-P(sol) polarization free energy of solvation -79.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds