Wall clock time and date at job start Tue Mar 31 2020 16:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30000 * 127.40622 * 2 1 4 4 O 1.20852 * 113.53243 * 180.02562 * 3 2 1 5 5 C 1.34446 * 113.07294 * 0.02562 * 4 3 2 6 6 N 1.32333 * 134.98847 * 179.97438 * 5 4 3 7 7 C 1.31471 * 121.78188 * 180.02562 * 6 5 4 8 8 C 1.40019 * 121.52175 * 359.96935 * 7 6 5 9 9 C 1.47697 * 120.50323 * 180.02562 * 8 7 6 10 10 O 1.21572 * 120.00027 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00294 * 0.02562 * 9 8 7 12 12 C 1.46495 * 120.00230 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47062 * 324.99175 * 12 11 9 14 14 C 1.52999 * 109.47657 * 84.99077 * 12 11 9 15 15 C 1.53002 * 109.47317 * 204.99663 * 12 11 9 16 16 C 1.53003 * 109.47269 * 64.99221 * 15 12 11 17 17 H 1.09000 * 109.46953 * 305.00936 * 16 15 12 18 18 C 1.52996 * 109.47332 * 185.00423 * 16 15 12 19 19 N 1.46505 * 109.46807 * 65.00478 * 16 15 12 20 20 C 1.36931 * 119.99788 * 205.00000 * 19 16 15 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 16 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 C 1.39910 * 118.99003 * 0.30197 * 8 7 6 29 29 C 1.38657 * 117.71461 * 359.46648 * 28 8 7 30 30 H 1.08997 * 109.46916 * 269.97133 * 1 2 3 31 31 H 1.09004 * 109.46992 * 29.97101 * 1 2 3 32 32 H 1.08998 * 109.47191 * 149.96956 * 1 2 3 33 33 H 1.07997 * 119.23887 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99724 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.46583 * 60.00443 * 14 12 11 36 36 H 1.09001 * 109.47265 * 179.97438 * 14 12 11 37 37 H 1.08991 * 109.47415 * 300.00577 * 14 12 11 38 38 H 1.09000 * 109.46766 * 304.99737 * 15 12 11 39 39 H 1.08992 * 109.47398 * 184.99831 * 15 12 11 40 40 H 1.09002 * 109.46807 * 300.00318 * 18 16 15 41 41 H 1.08998 * 109.47019 * 59.99816 * 18 16 15 42 42 H 1.08998 * 109.47099 * 180.02562 * 18 16 15 43 43 H 0.97000 * 119.99792 * 24.99795 * 19 16 15 44 44 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 45 45 H 1.08002 * 121.13990 * 179.72780 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2967 1.0327 0.0000 4 8 3.4700 0.7429 -0.0005 5 6 3.6849 -0.5843 -0.0015 6 7 4.7584 -1.3582 -0.0027 7 6 4.6665 -2.6697 -0.0040 8 6 3.4247 -3.3165 -0.0035 9 6 3.3476 -4.7915 -0.0043 10 8 2.2645 -5.3436 -0.0034 11 7 4.4781 -5.5254 -0.0051 12 6 4.4017 -6.9883 -0.0066 13 1 3.5422 -7.3079 0.5827 14 6 4.2492 -7.4898 -1.4440 15 6 5.6807 -7.5665 0.6023 16 6 5.7695 -7.1671 2.0766 17 1 5.6977 -6.0830 2.1643 18 6 7.1062 -7.6381 2.6530 19 7 4.6709 -7.7909 2.8185 20 6 4.2202 -7.2233 3.9803 21 1 4.6743 -6.3157 4.3496 22 6 3.1754 -7.8112 4.6802 23 7 2.7386 -7.2627 5.7940 24 14 2.3894 -9.3807 4.0412 25 1 3.1003 -10.5558 4.6060 26 1 0.9624 -9.4217 4.4500 27 1 2.4809 -9.4122 2.5592 28 6 2.2579 -2.5444 -0.0080 29 6 2.3975 -1.1649 -0.0014 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5143 33 1 5.5697 -3.2618 -0.0054 34 1 5.3423 -5.0849 -0.0055 35 1 5.1088 -7.1703 -2.0333 36 1 4.1928 -8.5783 -1.4450 37 1 3.3381 -7.0780 -1.8778 38 1 6.5464 -7.1760 0.0674 39 1 5.6630 -8.6532 0.5207 40 1 7.1779 -8.7222 2.5652 41 1 7.9236 -7.1741 2.1010 42 1 7.1692 -7.3540 3.7034 43 1 4.2627 -8.6058 2.4866 44 1 2.0088 -7.6736 6.2834 45 1 1.2820 -3.0071 -0.0121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135144024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:25 Heat of formation + Delta-G solvation = 66.078778 kcal Electronic energy + Delta-G solvation = -28472.278927 eV Core-core repulsion = 24493.720724 eV Total energy + Delta-G solvation = -3978.558203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.01454 -40.56018 -39.04436 -37.04702 -35.22357 -34.70097 -32.76763 -32.24951 -31.73393 -30.53240 -29.27346 -29.03877 -26.50335 -25.79412 -24.49990 -23.35087 -22.07302 -21.40007 -20.75619 -19.91698 -18.76496 -18.37489 -18.11480 -17.60560 -17.06848 -16.26644 -15.76045 -15.09782 -14.76230 -14.34890 -14.22670 -14.07234 -13.83020 -13.70483 -13.66081 -13.52822 -13.41020 -13.17711 -13.07693 -12.68914 -12.44917 -12.20639 -12.01985 -11.83724 -11.77052 -11.32302 -11.19352 -10.96009 -10.71213 -10.55507 -10.33404 -10.27068 -9.99805 -9.72316 -9.64528 -9.57422 -9.43746 -8.94503 -8.92159 -7.25973 -5.75147 -3.10423 0.21485 0.23347 1.75318 1.94642 2.64386 3.03737 3.39415 3.41278 3.47438 3.47716 3.50894 3.71869 4.03130 4.27432 4.40993 4.58850 4.61184 4.67191 4.91861 5.08731 5.11828 5.17815 5.18208 5.23909 5.37387 5.45641 5.53150 5.56754 5.64882 5.69907 5.74572 5.79314 5.83465 5.94881 6.13676 6.17838 6.27345 6.38528 6.44706 6.59519 6.76424 6.95444 7.09089 7.50665 7.85958 7.99743 8.22658 8.43475 9.22010 9.94817 10.13644 11.43370 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003351 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.444451 B = 8353.060434 C = 9135.803136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.073 3.927 3 N -0.318 5.318 4 O 0.083 5.917 5 C 0.229 3.771 6 N -0.462 5.462 7 C 0.196 3.804 8 C -0.195 4.195 9 C 0.570 3.430 10 O -0.524 6.524 11 N -0.708 5.708 12 C 0.143 3.857 13 H 0.103 0.897 14 C -0.162 4.162 15 C -0.136 4.136 16 C 0.176 3.824 17 H 0.054 0.946 18 C -0.166 4.166 19 N -0.745 5.745 20 C -0.239 4.239 21 H 0.088 0.912 22 C 0.006 3.994 23 N -0.935 5.935 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.276 1.276 28 C 0.066 3.934 29 C -0.227 4.227 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.180 0.820 34 H 0.395 0.605 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.045 0.955 41 H 0.038 0.962 42 H 0.057 0.943 43 H 0.360 0.640 44 H 0.258 0.742 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.401 9.294 -17.538 19.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 N -0.026 5.026 4 O 0.027 5.973 5 C 0.047 3.953 6 N -0.178 5.178 7 C 0.030 3.970 8 C -0.200 4.200 9 C 0.355 3.645 10 O -0.400 6.400 11 N -0.360 5.360 12 C 0.039 3.961 13 H 0.121 0.879 14 C -0.221 4.221 15 C -0.174 4.174 16 C 0.066 3.934 17 H 0.072 0.928 18 C -0.226 4.226 19 N -0.389 5.389 20 C -0.369 4.369 21 H 0.105 0.895 22 C -0.190 4.190 23 N -0.582 5.582 24 Si 0.713 3.287 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.202 1.202 28 C 0.038 3.962 29 C -0.232 4.232 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.196 0.804 34 H 0.230 0.770 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.193 0.807 44 H 0.069 0.931 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.241 10.837 -17.334 20.565 hybrid contribution -0.884 -2.057 -0.136 2.243 sum 1.357 8.779 -17.470 19.599 Atomic orbital electron populations 1.20307 0.84260 1.04586 1.04453 1.24331 0.98448 0.86598 1.00295 1.73490 0.88691 1.23119 1.17330 1.84896 1.20147 1.19357 1.72906 1.21748 0.90519 0.86322 0.96715 1.66397 1.29895 1.04930 1.16591 1.23081 0.97181 0.87724 0.89023 1.21031 0.94582 0.95502 1.08931 1.17597 0.84825 0.85231 0.76798 1.90820 1.27775 1.72358 1.49047 1.45841 1.07860 1.07578 1.74685 1.21083 1.00873 0.77973 0.96142 0.87883 1.22197 1.01832 1.01446 0.96593 1.22241 0.96085 1.01573 0.97543 1.20207 0.88014 0.96847 0.88287 0.92804 1.22424 0.97809 1.00640 1.01751 1.42776 1.39356 1.29650 1.27091 1.19001 1.13054 1.07584 0.97289 0.89462 1.24641 0.98669 0.98611 0.97040 1.69695 1.30182 1.41079 1.17292 0.86577 0.79067 0.84621 0.78425 1.21273 1.21852 1.20224 1.20969 1.00092 0.89293 0.85834 1.20883 0.94661 0.95651 1.12043 0.88985 0.89625 0.89216 0.80368 0.77018 0.92743 0.91653 0.92334 0.91346 0.90501 0.93605 0.94283 0.92381 0.80737 0.93150 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.50 36.01 0.38 -0.16 16 2 C 0.07 0.78 7.59 -79.98 -0.61 0.18 16 3 N -0.32 -3.94 11.94 34.92 0.42 -3.52 16 4 O 0.08 1.09 11.11 16.10 0.18 1.27 16 5 C 0.23 2.99 8.75 -16.20 -0.14 2.84 16 6 N -0.46 -5.78 10.36 -12.61 -0.13 -5.91 16 7 C 0.20 2.09 10.68 -17.04 -0.18 1.90 16 8 C -0.19 -2.39 5.90 -104.74 -0.62 -3.01 16 9 C 0.57 8.27 7.74 -12.40 -0.10 8.17 16 10 O -0.52 -9.64 16.08 5.30 0.09 -9.56 16 11 N -0.71 -8.71 4.40 -54.80 -0.24 -8.95 16 12 C 0.14 1.96 2.52 -67.93 -0.17 1.79 16 13 H 0.10 1.88 7.05 -51.93 -0.37 1.52 16 14 C -0.16 -1.83 9.48 37.16 0.35 -1.48 16 15 C -0.14 -1.73 4.29 -26.73 -0.11 -1.84 16 16 C 0.18 2.97 2.84 -67.93 -0.19 2.78 16 17 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 18 C -0.17 -2.62 9.49 37.16 0.35 -2.27 16 19 N -0.75 -16.53 4.30 -53.42 -0.23 -16.76 16 20 C -0.24 -6.56 10.41 -15.06 -0.16 -6.72 16 21 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 22 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 23 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16 24 Si 0.88 22.17 27.74 -169.99 -4.72 17.46 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.28 -6.50 6.51 56.52 0.37 -6.13 16 28 C 0.07 0.80 9.75 -38.80 -0.38 0.42 16 29 C -0.23 -2.72 6.55 -105.22 -0.69 -3.41 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.18 1.25 6.39 -52.49 -0.34 0.91 16 34 H 0.39 3.53 6.65 -40.82 -0.27 3.26 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.36 7.97 5.66 -40.82 -0.23 7.74 16 44 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 45 H 0.16 1.77 7.74 -52.49 -0.41 1.36 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -35.16 379.60 -6.74 -41.91 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.24 Total: 7.68 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.36 Total: -0.73 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.59 Total: -63.74 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.26 Total: -8.28 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.72 Total: 17.46 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.16 -6.74 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135144024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.986 kcal (2) G-P(sol) polarization free energy of solvation -35.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds