Wall clock time and date at job start Tue Mar 31 2020 16:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30000 * 127.40622 * 2 1 4 4 O 1.20852 * 113.53243 * 180.02562 * 3 2 1 5 5 C 1.34446 * 113.07294 * 0.02562 * 4 3 2 6 6 N 1.32333 * 134.98847 * 179.97438 * 5 4 3 7 7 C 1.31471 * 121.78188 * 180.02562 * 6 5 4 8 8 C 1.40019 * 121.52175 * 359.96935 * 7 6 5 9 9 C 1.47697 * 120.50323 * 180.02562 * 8 7 6 10 10 O 1.21572 * 120.00027 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00294 * 0.02562 * 9 8 7 12 12 C 1.46495 * 120.00230 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47062 * 324.99175 * 12 11 9 14 14 C 1.52999 * 109.47657 * 84.99077 * 12 11 9 15 15 C 1.53002 * 109.47317 * 204.99663 * 12 11 9 16 16 C 1.53003 * 109.47269 * 64.99221 * 15 12 11 17 17 H 1.09000 * 109.46953 * 305.00936 * 16 15 12 18 18 C 1.52996 * 109.47332 * 185.00423 * 16 15 12 19 19 N 1.46505 * 109.46807 * 65.00478 * 16 15 12 20 20 C 1.36931 * 119.99788 * 205.00000 * 19 16 15 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 16 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 C 1.39910 * 118.99003 * 0.30197 * 8 7 6 29 29 C 1.38657 * 117.71461 * 359.46648 * 28 8 7 30 30 H 1.08997 * 109.46916 * 269.97133 * 1 2 3 31 31 H 1.09004 * 109.46992 * 29.97101 * 1 2 3 32 32 H 1.08998 * 109.47191 * 149.96956 * 1 2 3 33 33 H 1.07997 * 119.23887 * 179.97438 * 7 6 5 34 34 H 0.97000 * 119.99724 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.46583 * 60.00443 * 14 12 11 36 36 H 1.09001 * 109.47265 * 179.97438 * 14 12 11 37 37 H 1.08991 * 109.47415 * 300.00577 * 14 12 11 38 38 H 1.09000 * 109.46766 * 304.99737 * 15 12 11 39 39 H 1.08992 * 109.47398 * 184.99831 * 15 12 11 40 40 H 1.09002 * 109.46807 * 300.00318 * 18 16 15 41 41 H 1.08998 * 109.47019 * 59.99816 * 18 16 15 42 42 H 1.08998 * 109.47099 * 180.02562 * 18 16 15 43 43 H 0.97000 * 119.99792 * 24.99795 * 19 16 15 44 44 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 45 45 H 1.08002 * 121.13990 * 179.72780 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2967 1.0327 0.0000 4 8 3.4700 0.7429 -0.0005 5 6 3.6849 -0.5843 -0.0015 6 7 4.7584 -1.3582 -0.0027 7 6 4.6665 -2.6697 -0.0040 8 6 3.4247 -3.3165 -0.0035 9 6 3.3476 -4.7915 -0.0043 10 8 2.2645 -5.3436 -0.0034 11 7 4.4781 -5.5254 -0.0051 12 6 4.4017 -6.9883 -0.0066 13 1 3.5422 -7.3079 0.5827 14 6 4.2492 -7.4898 -1.4440 15 6 5.6807 -7.5665 0.6023 16 6 5.7695 -7.1671 2.0766 17 1 5.6977 -6.0830 2.1643 18 6 7.1062 -7.6381 2.6530 19 7 4.6709 -7.7909 2.8185 20 6 4.2202 -7.2233 3.9803 21 1 4.6743 -6.3157 4.3496 22 6 3.1754 -7.8112 4.6802 23 7 2.7386 -7.2627 5.7940 24 14 2.3894 -9.3807 4.0412 25 1 3.1003 -10.5558 4.6060 26 1 0.9624 -9.4217 4.4500 27 1 2.4809 -9.4122 2.5592 28 6 2.2579 -2.5444 -0.0080 29 6 2.3975 -1.1649 -0.0014 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5143 33 1 5.5697 -3.2618 -0.0054 34 1 5.3423 -5.0849 -0.0055 35 1 5.1088 -7.1703 -2.0333 36 1 4.1928 -8.5783 -1.4450 37 1 3.3381 -7.0780 -1.8778 38 1 6.5464 -7.1760 0.0674 39 1 5.6630 -8.6532 0.5207 40 1 7.1779 -8.7222 2.5652 41 1 7.9236 -7.1741 2.1010 42 1 7.1692 -7.3540 3.7034 43 1 4.2627 -8.6058 2.4866 44 1 2.0088 -7.6736 6.2834 45 1 1.2820 -3.0071 -0.0121 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135144024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:24 Heat of formation + Delta-G solvation = 39.753176 kcal Electronic energy + Delta-G solvation = -28473.420491 eV Core-core repulsion = 24493.720724 eV Total energy + Delta-G solvation = -3979.699766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.92309 -41.58777 -40.09260 -38.38185 -36.23666 -35.99634 -34.16683 -33.61976 -32.84988 -31.69912 -30.87609 -29.75509 -27.57581 -26.75244 -25.44677 -25.28763 -23.11203 -22.33693 -21.92666 -21.30635 -19.92871 -19.47198 -19.28429 -19.04699 -18.00519 -17.32735 -16.89813 -16.56489 -16.15721 -15.83305 -15.30705 -15.19339 -15.01839 -14.71103 -14.56155 -14.47396 -14.37440 -14.31182 -14.19504 -13.95704 -13.78614 -13.39848 -13.22251 -12.97784 -12.77312 -12.67431 -12.59400 -12.36164 -12.07662 -11.96359 -11.83310 -11.64748 -11.40771 -11.37182 -10.93731 -10.75794 -10.59753 -10.40268 -10.00803 -9.23776 -7.98747 -5.28686 -0.74793 -0.68169 0.87315 1.02513 1.36570 1.40738 1.46767 1.59609 2.02104 2.47029 2.50802 2.65780 2.85966 3.14274 3.34728 3.42156 3.49250 3.62720 3.69946 3.82280 3.89251 4.12390 4.30445 4.39606 4.43628 4.56531 4.60653 4.63949 4.70020 4.71982 4.82345 4.87916 4.89892 4.95455 5.05805 5.09376 5.13432 5.25326 5.38432 5.41454 5.58663 5.65222 5.83380 6.16528 6.26135 6.50355 6.93798 7.14568 7.18432 7.93850 8.09000 9.23532 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003351 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.444451 B = 8353.060434 C = 9135.803136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.084 3.916 3 N -0.338 5.338 4 O 0.067 5.933 5 C 0.216 3.784 6 N -0.475 5.475 7 C 0.209 3.791 8 C -0.206 4.206 9 C 0.568 3.432 10 O -0.571 6.571 11 N -0.696 5.696 12 C 0.142 3.858 13 H 0.054 0.946 14 C -0.153 4.153 15 C -0.122 4.122 16 C 0.165 3.835 17 H 0.046 0.954 18 C -0.159 4.159 19 N -0.749 5.749 20 C -0.212 4.212 21 H 0.054 0.946 22 C -0.068 4.068 23 N -0.989 5.989 24 Si 0.948 3.052 25 H -0.278 1.278 26 H -0.305 1.305 27 H -0.252 1.252 28 C 0.066 3.934 29 C -0.237 4.237 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.217 0.783 34 H 0.413 0.587 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.023 0.977 43 H 0.362 0.638 44 H 0.253 0.747 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 8.274 -20.181 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 N -0.049 5.049 4 O 0.014 5.986 5 C 0.035 3.965 6 N -0.192 5.192 7 C 0.043 3.957 8 C -0.212 4.212 9 C 0.355 3.645 10 O -0.451 6.451 11 N -0.348 5.348 12 C 0.037 3.963 13 H 0.072 0.928 14 C -0.211 4.211 15 C -0.161 4.161 16 C 0.057 3.943 17 H 0.064 0.936 18 C -0.219 4.219 19 N -0.392 5.392 20 C -0.343 4.343 21 H 0.072 0.928 22 C -0.259 4.259 23 N -0.641 5.641 24 Si 0.776 3.224 25 H -0.205 1.205 26 H -0.232 1.232 27 H -0.176 1.176 28 C 0.038 3.962 29 C -0.242 4.242 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.233 0.767 34 H 0.252 0.748 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.042 0.958 43 H 0.195 0.805 44 H 0.062 0.938 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.926 9.823 -20.041 22.662 hybrid contribution -1.293 -1.656 0.672 2.206 sum 2.633 8.167 -19.369 21.185 Atomic orbital electron populations 1.20545 0.81573 1.06145 1.05525 1.24957 0.99915 0.85595 0.98061 1.73494 0.88634 1.23716 1.19056 1.84869 1.20708 1.19482 1.73495 1.22039 0.91245 0.86555 0.96704 1.66496 1.29825 1.05457 1.17442 1.23617 0.97798 0.87302 0.86971 1.20960 0.95530 0.94399 1.10279 1.17881 0.84632 0.86006 0.76027 1.90796 1.29532 1.73326 1.51462 1.45748 1.08248 1.07314 1.73463 1.21003 0.99567 0.78504 0.97191 0.92799 1.22106 1.02309 1.01875 0.94833 1.22173 0.97234 1.02405 0.94251 1.20551 0.86817 0.96220 0.90673 0.93575 1.22301 0.98203 1.01255 1.00091 1.42840 1.40727 1.29785 1.25891 1.18965 1.11426 1.05718 0.98193 0.92846 1.25414 1.00206 1.02525 0.97720 1.69881 1.31442 1.43329 1.19417 0.85505 0.77097 0.80610 0.79172 1.20453 1.23240 1.17635 1.21109 1.00534 0.89365 0.85174 1.21011 0.94798 0.95862 1.12556 0.87956 0.88100 0.87626 0.76708 0.74848 0.89725 0.90766 0.94094 0.86667 0.89446 0.93106 0.90113 0.95786 0.80489 0.93796 0.81573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.50 71.24 0.75 -0.25 16 2 C 0.08 1.77 7.59 45.02 0.34 2.12 16 3 N -0.34 -8.34 11.94 -43.54 -0.52 -8.86 16 4 O 0.07 1.78 11.11 67.81 0.75 2.53 16 5 C 0.22 5.61 8.75 85.35 0.75 6.36 16 6 N -0.48 -11.44 10.36 -307.29 -3.18 -14.63 16 7 C 0.21 4.09 10.68 85.18 0.91 5.00 16 8 C -0.21 -4.90 5.90 -19.94 -0.12 -5.02 16 9 C 0.57 16.08 7.74 86.74 0.67 16.75 16 10 O -0.57 -21.34 16.08 -3.94 -0.06 -21.40 16 11 N -0.70 -15.52 4.40 -445.55 -1.96 -17.49 16 12 C 0.14 3.52 2.52 44.99 0.11 3.63 16 13 H 0.05 1.92 7.05 -2.38 -0.02 1.91 16 14 C -0.15 -2.96 9.48 71.98 0.68 -2.27 16 15 C -0.12 -2.59 4.29 30.60 0.13 -2.45 16 16 C 0.16 5.15 2.84 44.99 0.13 5.28 16 17 H 0.05 1.52 7.56 -2.39 -0.02 1.50 16 18 C -0.16 -4.52 9.49 71.98 0.68 -3.84 16 19 N -0.75 -32.46 4.30 -322.93 -1.39 -33.84 16 20 C -0.21 -11.79 10.41 84.04 0.87 -10.91 16 21 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 22 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 23 N -0.99 -64.52 13.97 21.65 0.30 -64.21 16 24 Si 0.95 46.40 27.74 68.60 1.90 48.30 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.30 -15.49 7.11 99.48 0.71 -14.79 16 27 H -0.25 -11.13 6.51 99.48 0.65 -10.48 16 28 C 0.07 1.58 9.75 22.78 0.22 1.80 16 29 C -0.24 -5.63 6.55 -20.25 -0.13 -5.76 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.22 2.30 6.39 -2.91 -0.02 2.28 16 34 H 0.41 5.88 6.65 -92.71 -0.62 5.26 16 35 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.36 15.39 5.66 -92.71 -0.52 14.86 16 44 H 0.25 15.91 8.31 -92.71 -0.77 15.13 16 45 H 0.17 3.69 7.74 -2.91 -0.02 3.66 16 Total: -1.00 -81.43 379.60 2.15 -79.27 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: -0.16 Total: 23.46 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 6.47 Total: 6.86 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -6.75 Total: -139.03 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.69 Total: -18.87 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Total: -81.43 2.15 -79.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135144024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.028 kcal (2) G-P(sol) polarization free energy of solvation -81.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds