Wall clock time and date at job start Tue Mar 31 2020 16:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30002 * 127.39519 * 2 1 4 4 O 1.20860 * 113.52176 * 180.02562 * 3 2 1 5 5 C 1.34441 * 113.07910 * 359.97438 * 4 3 2 6 6 N 1.32334 * 134.99138 * 179.97438 * 5 4 3 7 7 C 1.31473 * 121.77989 * 180.02562 * 6 5 4 8 8 C 1.40014 * 121.52184 * 0.02731 * 7 6 5 9 9 C 1.47713 * 120.50115 * 179.97438 * 8 7 6 10 10 O 1.21572 * 119.99887 * 185.47819 * 9 8 7 11 11 N 1.34766 * 120.00040 * 5.48264 * 9 8 7 12 12 C 1.46501 * 120.00168 * 185.06002 * 11 9 8 13 13 H 1.08999 * 109.46959 * 322.03761 * 12 11 9 14 14 C 1.52999 * 109.47093 * 82.03543 * 12 11 9 15 15 C 1.53002 * 109.47434 * 202.03329 * 12 11 9 16 16 C 1.53002 * 109.46597 * 63.24666 * 15 12 11 17 17 H 1.09006 * 109.47227 * 306.17567 * 16 15 12 18 18 C 1.52998 * 109.47538 * 66.17733 * 16 15 12 19 19 N 1.46502 * 109.46761 * 186.17911 * 16 15 12 20 20 C 1.36938 * 119.99720 * 158.25547 * 19 16 15 21 21 H 1.08000 * 120.00401 * 4.95205 * 20 19 16 22 22 C 1.38816 * 119.99945 * 184.95407 * 20 19 16 23 23 N 1.31619 * 120.00174 * 184.60131 * 22 20 19 24 24 Si 1.86799 * 119.99642 * 4.59858 * 22 20 19 25 25 H 1.48505 * 109.47348 * 94.01653 * 24 22 20 26 26 H 1.48507 * 109.47129 * 214.01518 * 24 22 20 27 27 H 1.48497 * 109.47457 * 334.01582 * 24 22 20 28 28 C 1.39902 * 118.99768 * 0.24640 * 8 7 6 29 29 C 1.38661 * 117.70841 * 359.47118 * 28 8 7 30 30 H 1.08998 * 109.47542 * 269.97630 * 1 2 3 31 31 H 1.09006 * 109.47140 * 29.98097 * 1 2 3 32 32 H 1.09008 * 109.46923 * 149.97613 * 1 2 3 33 33 H 1.08001 * 119.23901 * 179.97438 * 7 6 5 34 34 H 0.97005 * 120.00247 * 5.05568 * 11 9 8 35 35 H 1.08999 * 109.47040 * 60.00268 * 14 12 11 36 36 H 1.09002 * 109.47458 * 180.02562 * 14 12 11 37 37 H 1.09005 * 109.47181 * 300.00372 * 14 12 11 38 38 H 1.08998 * 109.47125 * 303.24543 * 15 12 11 39 39 H 1.08996 * 109.47043 * 183.24063 * 15 12 11 40 40 H 1.09003 * 109.47090 * 300.00115 * 18 16 15 41 41 H 1.09006 * 109.46997 * 59.99693 * 18 16 15 42 42 H 1.09002 * 109.47520 * 179.97438 * 18 16 15 43 43 H 0.96995 * 119.99935 * 338.25346 * 19 16 15 44 44 H 0.97001 * 119.99598 * 179.97438 * 23 22 20 45 45 H 1.08000 * 121.14897 * 179.72977 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2965 1.0328 0.0000 4 8 3.4699 0.7430 -0.0005 5 6 3.6849 -0.5841 -0.0004 6 7 4.7584 -1.3579 -0.0012 7 6 4.6666 -2.6694 -0.0013 8 6 3.4248 -3.3163 -0.0011 9 6 3.3479 -4.7914 -0.0018 10 8 2.2696 -5.3438 -0.1022 11 7 4.4731 -5.5249 0.1089 12 6 4.4101 -6.9843 -0.0029 13 1 3.5032 -7.3469 0.4809 14 6 4.3941 -7.3823 -1.4802 15 6 5.6333 -7.6013 0.6782 16 6 5.6061 -7.2706 2.1718 17 1 5.5125 -6.1926 2.3037 18 6 4.4138 -7.9701 2.8275 19 7 6.8478 -7.7331 2.7970 20 6 7.2638 -7.1847 3.9808 21 1 6.6381 -6.4696 4.4942 22 6 8.4899 -7.5478 4.5210 23 7 8.8501 -7.0912 5.7017 24 14 9.6286 -8.6847 3.5721 25 1 10.5921 -7.8752 2.7838 26 1 10.3711 -9.5491 4.5244 27 1 8.8278 -9.5338 2.6539 28 6 2.2580 -2.5444 -0.0061 29 6 2.3976 -1.1648 0.0003 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 5.5699 -3.2615 -0.0024 34 1 5.3247 -5.0866 0.2626 35 1 5.3010 -7.0197 -1.9640 36 1 4.3468 -8.4681 -1.5634 37 1 3.5227 -6.9427 -1.9655 38 1 6.5411 -7.1947 0.2325 39 1 5.6162 -8.6830 0.5452 40 1 3.4900 -7.6260 2.3623 41 1 4.5074 -9.0481 2.6956 42 1 4.3947 -7.7349 3.8917 43 1 7.3751 -8.4276 2.3723 44 1 9.7067 -7.3453 6.0793 45 1 1.2822 -3.0070 -0.0105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135144026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:32 Heat of formation + Delta-G solvation = 41.266646 kcal Electronic energy + Delta-G solvation = -27959.635285 eV Core-core repulsion = 23980.001148 eV Total energy + Delta-G solvation = -3979.634137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.90906 -41.61268 -40.13005 -38.40769 -36.32628 -36.01190 -34.17863 -33.60435 -32.85899 -31.77563 -30.65066 -29.73307 -27.61939 -26.78217 -25.52847 -25.36660 -23.12024 -22.34714 -21.98936 -21.20298 -19.92337 -19.43089 -19.28240 -19.03624 -17.95995 -17.33175 -16.92223 -16.58224 -16.16777 -15.90393 -15.33989 -15.19518 -15.02901 -14.70455 -14.59084 -14.48316 -14.39320 -14.30543 -14.22729 -13.89921 -13.75778 -13.47346 -13.30478 -12.96542 -12.78444 -12.69403 -12.64854 -12.19279 -12.06940 -12.01778 -11.80054 -11.57360 -11.47450 -11.37196 -10.93246 -10.74518 -10.60101 -10.40729 -10.04301 -9.26234 -7.97929 -5.30928 -0.75013 -0.66437 0.89237 1.03601 1.41258 1.46366 1.53461 1.56807 1.99328 2.44511 2.53222 2.67066 2.86452 3.14947 3.33393 3.41292 3.49000 3.50738 3.63105 3.85071 4.02376 4.17819 4.24046 4.32431 4.45652 4.50494 4.61810 4.62512 4.65532 4.69235 4.73272 4.84576 4.92015 4.96981 5.00895 5.09595 5.12523 5.14472 5.38129 5.43555 5.47494 5.62942 5.83576 6.18960 6.26682 6.44473 6.94960 7.08586 7.14614 7.91360 8.10893 9.23941 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.002735 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.301865 B =10235.764991 C =11335.405344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.087 3.913 3 N -0.341 5.341 4 O 0.061 5.939 5 C 0.215 3.785 6 N -0.484 5.484 7 C 0.204 3.796 8 C -0.208 4.208 9 C 0.576 3.424 10 O -0.561 6.561 11 N -0.707 5.707 12 C 0.149 3.851 13 H 0.083 0.917 14 C -0.156 4.156 15 C -0.125 4.125 16 C 0.170 3.830 17 H 0.044 0.956 18 C -0.160 4.160 19 N -0.751 5.751 20 C -0.223 4.223 21 H 0.050 0.950 22 C -0.070 4.070 23 N -0.988 5.988 24 Si 0.960 3.040 25 H -0.280 1.280 26 H -0.304 1.304 27 H -0.245 1.245 28 C 0.075 3.925 29 C -0.236 4.236 30 H 0.105 0.895 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.206 0.794 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.368 0.632 44 H 0.256 0.744 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.402 7.403 -19.565 26.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 N -0.053 5.053 4 O 0.009 5.991 5 C 0.033 3.967 6 N -0.201 5.201 7 C 0.039 3.961 8 C -0.213 4.213 9 C 0.363 3.637 10 O -0.441 6.441 11 N -0.358 5.358 12 C 0.045 3.955 13 H 0.101 0.899 14 C -0.214 4.214 15 C -0.163 4.163 16 C 0.062 3.938 17 H 0.063 0.937 18 C -0.219 4.219 19 N -0.396 5.396 20 C -0.354 4.354 21 H 0.068 0.932 22 C -0.260 4.260 23 N -0.639 5.639 24 Si 0.788 3.212 25 H -0.207 1.207 26 H -0.231 1.231 27 H -0.169 1.169 28 C 0.047 3.953 29 C -0.241 4.241 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.222 0.778 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.202 0.798 44 H 0.064 0.936 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -16.458 8.936 -19.488 27.028 hybrid contribution 0.798 -1.248 0.516 1.569 sum -15.660 7.688 -18.972 25.774 Atomic orbital electron populations 1.20567 0.81246 1.06207 1.05682 1.25021 0.99987 0.85489 0.97775 1.73528 0.88592 1.23982 1.19198 1.84880 1.20875 1.19719 1.73630 1.22068 0.91412 0.86579 0.96641 1.66456 1.30392 1.05758 1.17524 1.23567 0.98181 0.87261 0.87132 1.20941 0.95119 0.94708 1.10551 1.17709 0.84276 0.85654 0.76101 1.90780 1.28867 1.73051 1.51431 1.46018 1.09952 1.07955 1.71913 1.21027 0.99122 0.78343 0.97021 0.89918 1.22116 1.02410 1.02740 0.94107 1.22105 0.98061 1.02624 0.93525 1.20413 0.84917 0.96774 0.91665 0.93747 1.22341 0.98929 1.00931 0.99715 1.42862 1.26062 1.45820 1.24818 1.18953 1.00213 1.18836 0.97395 0.93188 1.25570 0.99852 1.02748 0.97874 1.69914 1.23253 1.51548 1.19204 0.85327 0.79091 0.78777 0.78007 1.20651 1.23106 1.16892 1.21147 1.00581 0.88893 0.84678 1.21053 0.94312 0.96191 1.12577 0.87623 0.88478 0.87210 0.77769 0.75187 0.91133 0.90164 0.93027 0.89808 0.88981 0.91843 0.92812 0.95881 0.79841 0.93563 0.80356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.50 71.24 0.75 0.12 16 2 C 0.09 1.51 7.58 45.02 0.34 1.85 16 3 N -0.34 -7.69 11.94 -43.55 -0.52 -8.21 16 4 O 0.06 1.54 11.11 67.85 0.75 2.29 16 5 C 0.21 5.20 8.75 85.35 0.75 5.95 16 6 N -0.48 -11.50 10.36 -307.29 -3.18 -14.69 16 7 C 0.20 3.78 10.66 85.18 0.91 4.68 16 8 C -0.21 -3.91 5.90 -19.94 -0.12 -4.03 16 9 C 0.58 12.16 7.69 86.75 0.67 12.82 16 10 O -0.56 -14.92 16.12 -3.94 -0.06 -14.98 16 11 N -0.71 -13.09 4.36 -445.54 -1.94 -15.03 16 12 C 0.15 2.87 2.44 44.99 0.11 2.98 16 13 H 0.08 1.86 5.92 -2.39 -0.01 1.85 16 14 C -0.16 -2.40 9.44 71.98 0.68 -1.73 16 15 C -0.12 -2.76 4.38 30.60 0.13 -2.63 16 16 C 0.17 5.52 2.90 44.99 0.13 5.65 16 17 H 0.04 1.52 7.40 -2.38 -0.02 1.50 16 18 C -0.16 -5.17 9.23 71.98 0.66 -4.50 16 19 N -0.75 -31.84 4.93 -322.92 -1.59 -33.44 16 20 C -0.22 -12.14 10.38 84.03 0.87 -11.27 16 21 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 22 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 23 N -0.99 -62.75 13.97 21.65 0.30 -62.45 16 24 Si 0.96 43.75 27.99 68.60 1.92 45.67 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 27 H -0.24 -9.63 6.17 99.48 0.61 -9.02 16 28 C 0.08 1.32 9.75 22.77 0.22 1.55 16 29 C -0.24 -4.65 6.55 -20.25 -0.13 -4.79 16 30 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.21 2.51 6.47 -2.91 -0.02 2.49 16 34 H 0.41 6.29 6.57 -92.70 -0.61 5.68 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.77 6.54 -2.39 -0.02 1.75 16 41 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.37 14.76 5.51 -92.71 -0.51 14.25 16 44 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.18 2.44 7.75 -2.91 -0.02 2.42 16 Total: -1.00 -75.90 376.78 1.95 -73.96 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -0.17 Total: 23.72 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.44 Total: 3.15 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -6.94 Total: -133.81 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.69 Total: -12.69 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.92 Total: 45.67 kcal Total: -75.90 1.95 -73.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135144026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.222 kcal (2) G-P(sol) polarization free energy of solvation -75.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds