Wall clock time and date at job start Tue Mar 31 2020 16:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 119.55376 * 2 1 4 4 C 1.39799 * 119.00397 * 180.02562 * 3 2 1 5 5 C 1.48146 * 120.92387 * 179.73133 * 4 3 2 6 6 O 1.21515 * 119.99898 * 352.44767 * 5 4 3 7 7 N 1.34772 * 119.99888 * 172.45403 * 5 4 3 8 8 C 1.47018 * 125.65155 * 5.00670 * 7 5 4 9 9 C 1.54323 * 107.27403 * 181.02372 * 8 7 5 10 10 C 1.55157 * 102.94363 * 22.18914 * 9 8 7 11 11 H 1.09000 * 111.00061 * 82.57092 * 10 9 8 12 12 N 1.46897 * 111.00424 * 206.42481 * 10 9 8 13 13 C 1.46907 * 110.99822 * 204.99857 * 12 10 9 14 14 C 1.50694 * 109.47032 * 179.97438 * 13 12 10 15 15 O 1.21298 * 120.00124 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99948 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99984 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00159 * 359.97438 * 17 16 14 19 19 C 1.38955 * 120.00026 * 180.02562 * 17 16 14 20 20 N 1.31409 * 119.99785 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99913 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47179 * 90.00245 * 21 19 17 23 23 H 1.48494 * 109.47036 * 210.00333 * 21 19 17 24 24 H 1.48501 * 109.47336 * 330.00462 * 21 19 17 25 25 C 1.47426 * 125.64789 * 184.69646 * 7 5 4 26 26 C 1.39838 * 118.15208 * 359.97438 * 4 3 2 27 27 C 1.38126 * 119.00175 * 359.97438 * 26 4 3 28 28 N 1.31799 * 119.55529 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46745 * 90.00113 * 1 2 3 30 30 H 1.08995 * 109.47067 * 209.99683 * 1 2 3 31 31 H 1.08995 * 109.47000 * 330.00075 * 1 2 3 32 32 H 1.07997 * 120.49909 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.88203 * 300.44099 * 8 7 5 34 34 H 1.08994 * 109.89019 * 61.60258 * 8 7 5 35 35 H 1.09006 * 110.72210 * 140.55586 * 9 8 7 36 36 H 1.09001 * 110.71934 * 263.82890 * 9 8 7 37 37 H 1.00903 * 110.99728 * 81.04902 * 12 10 9 38 38 H 1.09007 * 109.46933 * 299.99963 * 13 12 10 39 39 H 1.08999 * 109.47008 * 60.00327 * 13 12 10 40 40 H 0.96999 * 120.00298 * 0.02562 * 16 14 13 41 41 H 0.97005 * 119.99575 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36589 * 274.74711 * 25 7 5 43 43 H 1.08997 * 110.36629 * 37.06771 * 25 7 5 44 44 H 1.07999 * 120.49624 * 180.02562 * 26 4 3 45 45 H 1.08007 * 119.54745 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1885 -0.0005 5 6 4.3599 2.4520 -0.0065 6 8 3.7873 3.5142 -0.1493 7 7 5.6986 2.4233 0.1463 8 6 6.5265 1.2108 0.2236 9 6 7.9875 1.6654 0.4239 10 6 7.8299 3.0915 1.0146 11 1 7.6519 3.0517 2.0892 12 7 9.0025 3.9212 0.7075 13 6 9.1593 4.9972 1.6953 14 6 10.3699 5.8249 1.3486 15 8 11.0363 5.5462 0.3742 16 7 10.7115 6.8755 2.1206 17 6 11.8126 7.6288 1.8049 18 1 12.4065 7.3802 0.9377 19 6 12.1652 8.7116 2.6011 20 7 13.2209 9.4334 2.2987 21 14 11.1385 9.1413 4.1013 22 1 11.6651 8.4166 5.2857 23 1 11.2070 10.6044 4.3455 24 1 9.7271 8.7443 3.8655 25 6 6.5763 3.6027 0.2572 26 6 4.2344 -0.0507 -0.0005 27 6 3.4741 -1.2039 0.0006 28 7 2.1571 -1.1465 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6494 2.1377 -0.0004 33 1 6.2096 0.5988 1.0681 34 1 6.4388 0.6423 -0.7022 35 1 8.5020 1.0111 1.1277 36 1 8.5150 1.6991 -0.5294 37 1 8.9461 4.2947 -0.2282 38 1 8.2716 5.6299 1.6873 39 1 9.2878 4.5640 2.6872 40 1 10.1784 7.0986 2.8996 41 1 13.4668 10.1895 2.8544 42 1 6.8505 3.9659 -0.7332 43 1 6.0835 4.3898 0.8279 44 1 5.3130 -0.1052 -0.0005 45 1 3.9654 -2.1658 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186479660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:02 Heat of formation + Delta-G solvation = 0.011900 kcal Electronic energy + Delta-G solvation = -27189.639674 eV Core-core repulsion = 23208.216597 eV Total energy + Delta-G solvation = -3981.423077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.30131 -39.90861 -38.62915 -37.87373 -35.18126 -33.99419 -33.49581 -32.82318 -31.71673 -31.06116 -29.29951 -27.99551 -26.69369 -25.11932 -23.80367 -23.63758 -22.50284 -21.16447 -20.24224 -19.45525 -18.46140 -17.89815 -17.02201 -16.58984 -16.49877 -15.97822 -15.85827 -15.58102 -15.06349 -14.91765 -14.78201 -14.54130 -14.23911 -13.96078 -13.72015 -13.49953 -13.21298 -13.11356 -12.91505 -12.82025 -12.72365 -12.54962 -12.37122 -12.19497 -11.94219 -11.63871 -11.37177 -11.18993 -11.08769 -10.64009 -10.62225 -10.32140 -10.00862 -9.86826 -9.61190 -9.45707 -9.11916 -8.68278 -8.31443 -8.21510 -6.34458 -3.86164 0.27270 0.60147 2.39187 2.45482 3.00180 3.04502 3.13132 3.35266 3.67920 3.75070 3.78863 3.93352 4.07296 4.22762 4.23678 4.36889 4.49132 4.57591 4.62764 4.79143 4.80785 4.89560 4.97210 5.04705 5.09040 5.14502 5.18192 5.24041 5.38041 5.43090 5.47071 5.51774 5.54286 5.58179 5.68969 5.73861 5.76650 5.83152 5.90459 6.15004 6.91828 6.99010 7.37244 7.46086 7.53824 7.65339 8.10308 8.55302 8.91026 9.38363 9.77403 10.78476 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026517 B = 0.001927 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.664708 B =14523.212434 C =15138.013826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.123 3.877 3 C -0.116 4.116 4 C -0.079 4.079 5 C 0.571 3.429 6 O -0.528 6.528 7 N -0.606 5.606 8 C 0.087 3.913 9 C -0.123 4.123 10 C 0.077 3.923 11 H 0.095 0.905 12 N -0.651 5.651 13 C 0.045 3.955 14 C 0.448 3.552 15 O -0.565 6.565 16 N -0.589 5.589 17 C -0.306 4.306 18 H 0.120 0.880 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.880 3.120 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.270 1.270 25 C 0.075 3.925 26 C -0.183 4.183 27 C 0.101 3.899 28 N -0.472 5.472 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.147 0.853 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.355 0.645 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.371 0.629 41 H 0.274 0.726 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.170 0.830 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.585 -21.326 -1.019 31.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.014 4.014 3 C -0.137 4.137 4 C -0.090 4.090 5 C 0.360 3.640 6 O -0.405 6.405 7 N -0.340 5.340 8 C -0.036 4.036 9 C -0.161 4.161 10 C -0.035 4.035 11 H 0.113 0.887 12 N -0.282 5.282 13 C -0.088 4.088 14 C 0.234 3.766 15 O -0.447 6.447 16 N -0.228 5.228 17 C -0.435 4.435 18 H 0.138 0.862 19 C -0.161 4.161 20 N -0.519 5.519 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.201 1.201 24 H -0.195 1.195 25 C -0.049 4.049 26 C -0.202 4.202 27 C -0.056 4.056 28 N -0.183 5.183 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.176 0.824 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.187 0.813 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.367 -21.898 -1.406 31.333 hybrid contribution -0.858 1.893 0.988 2.301 sum -23.225 -20.005 -0.418 30.656 Atomic orbital electron populations 1.20747 0.88192 1.03816 1.03448 1.21327 0.97389 0.87730 0.94980 1.22125 0.93199 1.00190 0.98151 1.20265 0.94323 0.93428 1.00958 1.17893 0.80504 0.88535 0.77105 1.90807 1.69018 1.31426 1.49219 1.48211 1.05233 1.08812 1.71716 1.22677 0.91410 0.87837 1.01674 1.22740 0.93708 0.96323 1.03361 1.22870 0.87168 0.93718 0.99729 0.88657 1.60150 1.37344 1.23869 1.06864 1.21806 0.97192 0.92802 0.96990 1.19641 0.87795 0.83143 0.86015 1.90574 1.54639 1.70585 1.28911 1.42200 1.27169 1.27430 1.25982 1.19433 1.02924 1.07931 1.13218 0.86238 1.25047 0.96601 0.96263 0.98206 1.69622 1.24820 1.18524 1.38967 0.86671 0.80138 0.79174 0.83394 1.19565 1.20148 1.19520 1.23278 0.91461 0.88686 1.01458 1.23641 1.04219 0.92507 0.99837 1.22805 0.89118 0.98555 0.95138 1.67389 1.10516 1.29509 1.10874 0.90089 0.90170 0.90375 0.83554 0.90079 0.90093 0.89024 0.89334 0.82353 0.93421 0.89200 0.79662 0.91565 0.90579 0.90078 0.81338 0.81968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.17 36.01 0.37 -0.22 16 2 C 0.12 1.04 6.78 -82.63 -0.56 0.48 16 3 C -0.12 -1.07 9.31 -39.02 -0.36 -1.44 16 4 C -0.08 -0.76 5.91 -104.65 -0.62 -1.38 16 5 C 0.57 6.71 7.83 -12.19 -0.10 6.61 16 6 O -0.53 -8.08 16.77 5.35 0.09 -7.99 16 7 N -0.61 -5.90 3.32 -171.56 -0.57 -6.47 16 8 C 0.09 0.55 4.88 -3.07 -0.01 0.53 16 9 C -0.12 -0.91 6.64 -24.90 -0.17 -1.07 16 10 C 0.08 0.75 3.40 -65.45 -0.22 0.53 16 11 H 0.10 0.88 7.83 -51.93 -0.41 0.47 16 12 N -0.65 -8.81 6.04 -105.60 -0.64 -9.45 16 13 C 0.04 0.68 6.03 -4.98 -0.03 0.65 16 14 C 0.45 9.78 7.82 -10.99 -0.09 9.70 16 15 O -0.57 -14.68 15.78 5.54 0.09 -14.59 16 16 N -0.59 -13.69 5.09 -10.96 -0.06 -13.74 16 17 C -0.31 -8.55 10.16 -14.93 -0.15 -8.71 16 18 H 0.12 3.82 7.39 -52.48 -0.39 3.43 16 19 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 20 N -0.88 -25.47 13.96 55.50 0.77 -24.69 16 21 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 25 C 0.08 0.79 6.49 -2.41 -0.02 0.77 16 26 C -0.18 -1.29 8.68 -39.02 -0.34 -1.63 16 27 C 0.10 0.71 11.17 -17.60 -0.20 0.52 16 28 N -0.47 -4.27 10.25 -9.52 -0.10 -4.37 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 32 H 0.15 1.30 7.76 -52.49 -0.41 0.89 16 33 H 0.08 0.39 6.69 -51.93 -0.35 0.04 16 34 H 0.08 0.39 6.81 -51.93 -0.35 0.04 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.36 5.08 7.89 -39.29 -0.31 4.77 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 40 H 0.37 7.55 5.76 -40.82 -0.24 7.32 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.08 0.83 7.75 -51.93 -0.40 0.42 16 43 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 44 H 0.17 0.79 2.97 -52.72 -0.16 0.63 16 45 H 0.16 0.65 8.06 -52.48 -0.42 0.22 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -35.72 372.61 -8.07 -43.79 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -5.97 Total: 11.07 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -2.59 Total: 6.40 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.59 Total: -58.72 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.18 Total: -22.58 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.72 -8.07 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186479660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.803 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds