Wall clock time and date at job start Tue Mar 31 2020 16:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38169 * 119.55376 * 2 1 4 4 C 1.39799 * 119.00397 * 180.02562 * 3 2 1 5 5 C 1.48146 * 120.92387 * 179.73133 * 4 3 2 6 6 O 1.21515 * 119.99898 * 352.44767 * 5 4 3 7 7 N 1.34772 * 119.99888 * 172.45403 * 5 4 3 8 8 C 1.47018 * 125.65155 * 5.00670 * 7 5 4 9 9 C 1.54323 * 107.27403 * 181.02372 * 8 7 5 10 10 C 1.55157 * 102.94363 * 22.18914 * 9 8 7 11 11 H 1.09000 * 111.00061 * 82.57092 * 10 9 8 12 12 N 1.46897 * 111.00424 * 206.42481 * 10 9 8 13 13 C 1.46907 * 110.99822 * 204.99857 * 12 10 9 14 14 C 1.50694 * 109.47032 * 179.97438 * 13 12 10 15 15 O 1.21298 * 120.00124 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99948 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99984 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00159 * 359.97438 * 17 16 14 19 19 C 1.38955 * 120.00026 * 180.02562 * 17 16 14 20 20 N 1.31409 * 119.99785 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 119.99913 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47179 * 90.00245 * 21 19 17 23 23 H 1.48494 * 109.47036 * 210.00333 * 21 19 17 24 24 H 1.48501 * 109.47336 * 330.00462 * 21 19 17 25 25 C 1.47426 * 125.64789 * 184.69646 * 7 5 4 26 26 C 1.39838 * 118.15208 * 359.97438 * 4 3 2 27 27 C 1.38126 * 119.00175 * 359.97438 * 26 4 3 28 28 N 1.31799 * 119.55529 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46745 * 90.00113 * 1 2 3 30 30 H 1.08995 * 109.47067 * 209.99683 * 1 2 3 31 31 H 1.08995 * 109.47000 * 330.00075 * 1 2 3 32 32 H 1.07997 * 120.49909 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.88203 * 300.44099 * 8 7 5 34 34 H 1.08994 * 109.89019 * 61.60258 * 8 7 5 35 35 H 1.09006 * 110.72210 * 140.55586 * 9 8 7 36 36 H 1.09001 * 110.71934 * 263.82890 * 9 8 7 37 37 H 1.00903 * 110.99728 * 81.04902 * 12 10 9 38 38 H 1.09007 * 109.46933 * 299.99963 * 13 12 10 39 39 H 1.08999 * 109.47008 * 60.00327 * 13 12 10 40 40 H 0.96999 * 120.00298 * 0.02562 * 16 14 13 41 41 H 0.97005 * 119.99575 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.36589 * 274.74711 * 25 7 5 43 43 H 1.08997 * 110.36629 * 37.06771 * 25 7 5 44 44 H 1.07999 * 120.49624 * 180.02562 * 26 4 3 45 45 H 1.08007 * 119.54745 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2019 0.0000 4 6 3.5864 1.1885 -0.0005 5 6 4.3599 2.4520 -0.0065 6 8 3.7873 3.5142 -0.1493 7 7 5.6986 2.4233 0.1463 8 6 6.5265 1.2108 0.2236 9 6 7.9875 1.6654 0.4239 10 6 7.8299 3.0915 1.0146 11 1 7.6519 3.0517 2.0892 12 7 9.0025 3.9212 0.7075 13 6 9.1593 4.9972 1.6953 14 6 10.3699 5.8249 1.3486 15 8 11.0363 5.5462 0.3742 16 7 10.7115 6.8755 2.1206 17 6 11.8126 7.6288 1.8049 18 1 12.4065 7.3802 0.9377 19 6 12.1652 8.7116 2.6011 20 7 13.2209 9.4334 2.2987 21 14 11.1385 9.1413 4.1013 22 1 11.6651 8.4166 5.2857 23 1 11.2070 10.6044 4.3455 24 1 9.7271 8.7443 3.8655 25 6 6.5763 3.6027 0.2572 26 6 4.2344 -0.0507 -0.0005 27 6 3.4741 -1.2039 0.0006 28 7 2.1571 -1.1465 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6494 2.1377 -0.0004 33 1 6.2096 0.5988 1.0681 34 1 6.4388 0.6423 -0.7022 35 1 8.5020 1.0111 1.1277 36 1 8.5150 1.6991 -0.5294 37 1 8.9461 4.2947 -0.2282 38 1 8.2716 5.6299 1.6873 39 1 9.2878 4.5640 2.6872 40 1 10.1784 7.0986 2.8996 41 1 13.4668 10.1895 2.8544 42 1 6.8505 3.9659 -0.7332 43 1 6.0835 4.3898 0.8279 44 1 5.3130 -0.1052 -0.0005 45 1 3.9654 -2.1658 0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186479660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:01 Heat of formation + Delta-G solvation = -28.597759 kcal Electronic energy + Delta-G solvation = -27190.880282 eV Core-core repulsion = 23208.216597 eV Total energy + Delta-G solvation = -3982.663685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.99608 -40.66454 -40.21455 -38.88868 -36.35514 -35.75722 -34.20552 -33.74510 -33.42954 -31.87788 -30.12292 -28.58587 -28.03168 -26.23584 -25.04763 -24.38770 -23.13286 -21.95160 -21.29421 -20.95449 -20.30815 -18.64776 -17.81222 -17.79144 -17.18248 -17.06734 -16.91139 -16.66112 -16.42349 -15.98854 -15.57538 -15.47877 -15.20291 -15.06734 -14.80789 -14.48053 -14.38925 -14.25059 -13.96996 -13.92741 -13.60240 -13.34234 -13.28987 -13.13928 -12.95666 -12.89597 -12.48595 -12.41627 -12.02694 -11.96730 -11.73430 -11.52033 -11.51565 -11.00359 -10.50570 -10.43331 -10.25333 -10.02956 -9.86631 -9.40966 -8.41853 -6.02722 -0.39871 0.03751 1.29975 1.35048 1.43850 1.61950 1.67535 1.94916 2.22314 2.68317 2.74614 3.10860 3.14509 3.28459 3.36473 3.61077 3.64897 3.73070 3.91350 3.95700 4.02078 4.14002 4.17942 4.26144 4.37889 4.44656 4.47803 4.53638 4.57974 4.69421 4.70490 4.72685 4.75384 4.89919 4.92777 5.07850 5.15088 5.16166 5.21894 5.52139 5.61184 5.88765 6.00569 6.22640 6.27186 6.58564 6.82027 6.87458 6.89302 7.39091 7.95246 8.75639 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026517 B = 0.001927 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.664708 B =14523.212434 C =15138.013826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.115 3.885 3 C -0.132 4.132 4 C -0.096 4.096 5 C 0.566 3.434 6 O -0.578 6.578 7 N -0.603 5.603 8 C 0.083 3.917 9 C -0.116 4.116 10 C 0.082 3.918 11 H 0.111 0.889 12 N -0.663 5.663 13 C 0.058 3.942 14 C 0.448 3.552 15 O -0.613 6.613 16 N -0.591 5.591 17 C -0.329 4.329 18 H 0.056 0.944 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.255 1.255 23 H -0.277 1.277 24 H -0.233 1.233 25 C 0.075 3.925 26 C -0.171 4.171 27 C 0.101 3.899 28 N -0.492 5.492 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.348 0.652 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.196 0.804 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.659 -23.884 1.212 34.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.021 4.021 3 C -0.152 4.152 4 C -0.106 4.106 5 C 0.356 3.644 6 O -0.458 6.458 7 N -0.335 5.335 8 C -0.038 4.038 9 C -0.154 4.154 10 C -0.029 4.029 11 H 0.129 0.871 12 N -0.294 5.294 13 C -0.074 4.074 14 C 0.236 3.764 15 O -0.498 6.498 16 N -0.233 5.233 17 C -0.458 4.458 18 H 0.074 0.926 19 C -0.214 4.214 20 N -0.574 5.574 21 Si 0.784 3.216 22 H -0.180 1.180 23 H -0.202 1.202 24 H -0.156 1.156 25 C -0.050 4.050 26 C -0.190 4.190 27 C -0.056 4.056 28 N -0.202 5.202 29 H 0.107 0.893 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.157 0.843 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.168 0.832 38 H 0.092 0.908 39 H 0.139 0.861 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.212 0.788 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -24.450 -24.511 0.830 34.631 hybrid contribution -0.128 2.590 0.150 2.597 sum -24.578 -21.921 0.981 32.948 Atomic orbital electron populations 1.20814 0.86650 1.04493 1.04152 1.21653 0.98571 0.87318 0.94590 1.22183 0.93488 1.00395 0.99176 1.20254 0.94406 0.93454 1.02531 1.18271 0.81022 0.88684 0.76443 1.90772 1.70094 1.33205 1.51739 1.48273 1.04877 1.09821 1.70499 1.22966 0.90059 0.86845 1.03934 1.22737 0.94455 0.94865 1.03350 1.22937 0.85180 0.94185 1.00589 0.87107 1.60203 1.39612 1.23473 1.06119 1.21742 0.94177 0.92846 0.98613 1.20965 0.88668 0.82374 0.84388 1.90553 1.56696 1.71610 1.30910 1.42039 1.26396 1.27675 1.27155 1.19014 1.04639 1.09877 1.12294 0.92564 1.26109 0.97904 0.95238 1.02107 1.69805 1.27205 1.19368 1.41035 0.85377 0.79725 0.78726 0.77772 1.17980 1.20190 1.15595 1.23193 0.91899 0.88956 1.00906 1.23891 1.05408 0.91259 0.98423 1.23423 0.88620 0.99961 0.93600 1.67470 1.11690 1.29626 1.11454 0.89299 0.89810 0.89362 0.84273 0.87410 0.87951 0.87071 0.90041 0.83250 0.90849 0.86097 0.77491 0.91162 0.91580 0.91418 0.78780 0.78604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.17 71.24 0.72 -0.34 16 2 C 0.12 1.84 6.78 42.55 0.29 2.13 16 3 C -0.13 -2.40 9.31 22.63 0.21 -2.19 16 4 C -0.10 -1.72 5.91 -19.88 -0.12 -1.84 16 5 C 0.57 12.93 7.83 86.88 0.68 13.61 16 6 O -0.58 -18.15 16.77 -3.76 -0.06 -18.22 16 7 N -0.60 -10.59 3.32 -815.00 -2.71 -13.30 16 8 C 0.08 0.73 4.88 86.73 0.42 1.16 16 9 C -0.12 -1.30 6.64 31.78 0.21 -1.09 16 10 C 0.08 1.37 3.40 46.38 0.16 1.53 16 11 H 0.11 1.57 7.83 -2.39 -0.02 1.55 16 12 N -0.66 -16.72 6.04 -488.00 -2.95 -19.67 16 13 C 0.06 1.62 6.03 85.55 0.52 2.14 16 14 C 0.45 19.45 7.82 87.66 0.69 20.13 16 15 O -0.61 -32.94 15.78 -3.08 -0.05 -32.99 16 16 N -0.59 -27.26 5.09 -306.98 -1.56 -28.83 16 17 C -0.33 -19.09 10.16 84.04 0.85 -18.24 16 18 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 19 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 20 N -0.93 -56.06 13.96 21.66 0.30 -55.76 16 21 Si 0.96 38.49 27.74 68.60 1.90 40.39 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 23 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 24 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 25 C 0.08 1.47 6.49 86.93 0.56 2.04 16 26 C -0.17 -1.89 8.68 22.63 0.20 -1.69 16 27 C 0.10 1.10 11.17 84.67 0.95 2.05 16 28 N -0.49 -7.87 10.25 -184.04 -1.89 -9.76 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.69 8.07 -2.39 -0.02 0.67 16 32 H 0.14 2.61 7.76 -2.91 -0.02 2.59 16 33 H 0.11 0.47 6.69 -2.38 -0.02 0.46 16 34 H 0.10 0.55 6.81 -2.39 -0.02 0.53 16 35 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.35 9.76 7.89 -89.69 -0.71 9.05 16 38 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.12 2.70 8.09 -2.39 -0.02 2.68 16 40 H 0.39 14.83 5.76 -92.71 -0.53 14.30 16 41 H 0.28 15.31 8.31 -92.70 -0.77 14.54 16 42 H 0.07 1.42 7.75 -2.39 -0.02 1.41 16 43 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 44 H 0.20 0.93 2.97 -3.13 -0.01 0.92 16 45 H 0.20 0.68 8.06 -2.91 -0.02 0.65 16 Total: -1.00 -85.22 372.61 -0.45 -85.67 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -0.25 Total: 33.42 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 6.81 Total: 19.04 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -8.80 Total: -127.31 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -0.11 Total: -51.21 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.90 Total: 40.39 kcal Total: -85.22 -0.45 -85.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186479660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.074 kcal (2) G-P(sol) polarization free energy of solvation -85.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds