Wall clock time and date at job start Tue Mar 31 2020 16:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86807 * 119.99410 * 2 1 4 4 H 1.48493 * 109.47080 * 239.99843 * 3 2 1 5 5 H 1.48501 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46841 * 120.00249 * 3 2 1 7 7 C 1.38944 * 120.00595 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00381 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00046 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00135 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99810 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46977 * 179.97438 * 12 10 9 14 14 C 1.47903 * 111.00065 * 190.00449 * 13 12 10 15 15 C 1.53554 * 106.90247 * 211.76208 * 14 13 12 16 16 H 1.09003 * 111.73412 * 243.06112 * 15 14 13 17 17 C 1.53891 * 110.01576 * 118.33590 * 15 14 13 18 18 C 1.54047 * 103.86189 * 220.92103 * 17 15 14 19 19 N 1.46727 * 106.53082 * 28.03212 * 18 17 15 20 20 C 1.34776 * 125.23875 * 160.81966 * 19 18 17 21 21 O 1.21624 * 119.99931 * 185.40538 * 20 19 18 22 22 C 1.47265 * 119.99908 * 5.40220 * 20 19 18 23 23 C 1.46687 * 126.94463 * 6.52332 * 22 20 19 24 24 C 1.34483 * 106.33335 * 179.73878 * 23 22 20 25 25 N 1.36448 * 108.85738 * 0.24219 * 24 23 22 26 26 H 0.96996 * 124.85230 * 179.97438 * 25 24 23 27 27 C 1.34657 * 110.29681 * 359.97438 * 25 24 23 28 28 C 1.46780 * 109.51764 * 341.08667 * 19 18 17 29 29 H 1.09003 * 112.20008 * 238.16699 * 28 19 18 30 30 C 1.48334 * 110.99750 * 72.73184 * 13 12 10 31 31 H 0.96996 * 120.00853 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99888 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47032 * 60.00410 * 12 10 9 34 34 H 1.08996 * 109.47030 * 299.99972 * 12 10 9 35 35 H 1.08995 * 109.98029 * 92.39346 * 14 13 12 36 36 H 1.09004 * 110.00795 * 331.14016 * 14 13 12 37 37 H 1.09005 * 110.55133 * 102.33063 * 17 15 14 38 38 H 1.08999 * 110.54632 * 339.51406 * 17 15 14 39 39 H 1.09001 * 110.04219 * 268.76922 * 18 17 15 40 40 H 1.08996 * 110.04450 * 147.30518 * 18 17 15 41 41 H 1.08002 * 126.83282 * 0.02562 * 23 22 20 42 42 H 1.08000 * 125.57129 * 180.24521 * 24 23 22 43 43 H 1.08004 * 125.80110 * 179.97438 * 27 25 24 44 44 H 1.08999 * 110.52637 * 277.67857 * 30 13 12 45 45 H 1.08992 * 110.53069 * 40.30054 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2124 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0090 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3236 -2.3906 -0.0016 10 6 1.9976 -3.5577 -0.0026 11 8 3.2105 -3.5576 -0.0031 12 6 1.2442 -4.8629 -0.0032 13 7 2.1989 -5.9794 -0.0050 14 6 1.5097 -7.2657 -0.2455 15 6 2.2932 -8.3419 0.5200 16 1 2.7211 -9.0850 -0.1530 17 6 1.3930 -8.9902 1.5866 18 6 2.3192 -9.1425 2.8081 19 7 3.3217 -8.0757 2.7075 20 6 4.0792 -7.6220 3.7257 21 8 4.8123 -6.6659 3.5592 22 6 4.0193 -8.2839 5.0399 23 6 3.2986 -9.5170 5.3740 24 6 3.5287 -9.7479 6.6787 25 7 4.3257 -8.7546 7.1685 26 1 4.6343 -8.6932 8.0860 27 6 4.6225 -7.8716 6.1961 28 6 3.3678 -7.5746 1.3287 29 1 4.3606 -7.6697 0.8889 30 6 2.8578 -6.1174 1.3168 31 1 -0.4851 0.8399 0.0004 32 1 0.3536 -2.3907 -0.0016 33 1 0.6172 -4.9201 -0.8930 34 1 0.6179 -4.9213 0.8869 35 1 1.5079 -7.4938 -1.3113 36 1 0.4861 -7.2156 0.1259 37 1 1.0414 -9.9653 1.2493 38 1 0.5512 -8.3396 1.8235 39 1 2.8073 -10.1169 2.7877 40 1 1.7456 -9.0306 3.7281 41 1 2.7053 -10.1219 4.7042 42 1 3.1454 -10.5832 7.2460 43 1 5.2356 -6.9897 6.3092 44 1 3.6898 -5.4187 1.4039 45 1 2.1394 -5.9569 2.1206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187984818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:58 Heat of formation + Delta-G solvation = 5.955325 kcal Electronic energy + Delta-G solvation = -28561.517290 eV Core-core repulsion = 24580.351939 eV Total energy + Delta-G solvation = -3981.165351 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42148 -40.44273 -38.40990 -37.64390 -35.61480 -33.76189 -32.21864 -31.32309 -31.11848 -29.91157 -29.38796 -27.53929 -26.44735 -24.22771 -23.85563 -22.09385 -21.30030 -20.70405 -19.88795 -19.29122 -18.99233 -18.37459 -17.72594 -16.67068 -16.03923 -15.77805 -15.32823 -15.02917 -14.63683 -14.49042 -14.38950 -14.07846 -14.00029 -13.80859 -13.62658 -13.40251 -13.26739 -12.86588 -12.69142 -12.41555 -12.12827 -12.01916 -11.83403 -11.73894 -11.39694 -11.18940 -10.93527 -10.90604 -10.68045 -10.56404 -10.35934 -10.11323 -9.79553 -9.37872 -9.08978 -8.72020 -8.47685 -8.35879 -7.87735 -7.81004 -6.31626 -3.71730 1.66636 2.18325 2.83294 3.16873 3.27996 3.32046 3.37633 3.55362 4.03224 4.08729 4.28436 4.32472 4.52776 4.61555 4.67034 4.90124 4.98217 5.02873 5.10925 5.14647 5.22934 5.29961 5.35689 5.42735 5.51688 5.56467 5.60116 5.71117 5.74123 5.74569 5.88295 5.88460 5.94780 6.15076 6.18068 6.38745 6.40169 6.46557 6.66966 6.70733 7.14781 7.25022 7.32681 7.63711 7.65117 8.17235 8.38566 8.73721 9.29283 9.65972 10.19172 10.86502 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002839 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.519937 B = 9861.430458 C =11182.129679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.295 4.295 8 H 0.102 0.898 9 N -0.568 5.568 10 C 0.446 3.554 11 O -0.572 6.572 12 C 0.039 3.961 13 N -0.491 5.491 14 C 0.041 3.959 15 C -0.104 4.104 16 H 0.097 0.903 17 C -0.130 4.130 18 C 0.101 3.899 19 N -0.609 5.609 20 C 0.601 3.399 21 O -0.536 6.536 22 C -0.228 4.228 23 C -0.179 4.179 24 C -0.021 4.021 25 N -0.555 5.555 26 H 0.417 0.583 27 C 0.075 3.925 28 C 0.142 3.858 29 H 0.096 0.904 30 C 0.043 3.957 31 H 0.270 0.730 32 H 0.391 0.609 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.153 0.847 42 H 0.168 0.832 43 H 0.178 0.822 44 H 0.105 0.895 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -24.958 11.792 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.425 4.425 8 H 0.120 0.880 9 N -0.206 5.206 10 C 0.231 3.769 11 O -0.455 6.455 12 C -0.093 4.093 13 N -0.215 5.215 14 C -0.087 4.087 15 C -0.123 4.123 16 H 0.115 0.885 17 C -0.168 4.168 18 C -0.022 4.022 19 N -0.343 5.343 20 C 0.391 3.609 21 O -0.414 6.414 22 C -0.237 4.237 23 C -0.203 4.203 24 C -0.149 4.149 25 N -0.149 5.149 26 H 0.254 0.746 27 C -0.061 4.061 28 C 0.038 3.962 29 H 0.114 0.886 30 C -0.086 4.086 31 H 0.080 0.920 32 H 0.224 0.776 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.170 0.830 42 H 0.185 0.815 43 H 0.195 0.805 44 H 0.123 0.877 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.666 -24.144 11.477 26.785 hybrid contribution -0.914 0.678 1.052 1.550 sum 0.752 -23.466 12.530 26.612 Atomic orbital electron populations 1.69604 1.05894 1.28068 1.51196 1.25228 0.95616 0.99601 0.97586 0.85935 0.78742 0.80571 0.79074 1.19917 1.21064 1.19955 1.19654 0.93339 0.82258 1.47210 0.88014 1.41838 1.09075 1.04544 1.65115 1.19722 0.88450 0.84477 0.84215 1.90530 1.13618 1.86926 1.54389 1.22049 0.94014 0.91820 1.01431 1.64459 1.26397 1.00986 1.29652 1.22930 0.95848 0.89254 1.00711 1.22572 0.95555 0.97558 0.96615 0.88488 1.22622 0.97865 1.01861 0.94417 1.22285 0.89842 0.90859 0.99189 1.48026 1.39313 1.37953 1.08974 1.17063 0.79113 0.82371 0.82320 1.90849 1.40401 1.27045 1.83089 1.20335 1.09320 1.00405 0.93689 1.22513 1.04334 0.98161 0.95294 1.21822 1.01295 0.95964 0.95820 1.41662 1.40681 1.20750 1.11827 0.74627 1.21878 1.01148 0.95785 0.87306 1.22250 0.99445 0.93795 0.80687 0.88633 1.23418 0.99894 0.96208 0.89044 0.91973 0.77608 0.89309 0.93374 0.90083 0.93543 0.89741 0.90568 0.91527 0.90128 0.82972 0.81501 0.80473 0.87708 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.51 13.05 55.50 0.72 -24.79 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.29 -8.62 9.68 -14.94 -0.14 -8.76 16 8 H 0.10 3.12 7.16 -52.49 -0.38 2.75 16 9 N -0.57 -15.18 5.29 -10.96 -0.06 -15.24 16 10 C 0.45 11.28 7.61 -10.98 -0.08 11.19 16 11 O -0.57 -16.60 14.65 5.55 0.08 -16.52 16 12 C 0.04 0.74 5.21 -4.97 -0.03 0.72 16 13 N -0.49 -8.83 4.92 -232.71 -1.15 -9.97 16 14 C 0.04 0.52 6.24 -2.98 -0.02 0.51 16 15 C -0.10 -1.13 3.87 -88.90 -0.34 -1.47 16 16 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 17 C -0.13 -1.09 6.48 -25.72 -0.17 -1.25 16 18 C 0.10 0.92 5.04 -3.37 -0.02 0.91 16 19 N -0.61 -8.22 2.93 -164.46 -0.48 -8.70 16 20 C 0.60 9.42 7.64 -12.59 -0.10 9.33 16 21 O -0.54 -10.71 16.77 5.26 0.09 -10.62 16 22 C -0.23 -2.78 6.18 -103.35 -0.64 -3.42 16 23 C -0.18 -1.58 9.26 -37.50 -0.35 -1.93 16 24 C -0.02 -0.14 11.89 -16.82 -0.20 -0.34 16 25 N -0.55 -3.64 5.90 -12.85 -0.08 -3.72 16 26 H 0.42 1.28 8.96 -40.82 -0.37 0.91 16 27 C 0.08 0.76 11.70 -16.84 -0.20 0.56 16 28 C 0.14 2.09 3.89 -66.08 -0.26 1.84 16 29 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 30 C 0.04 0.80 4.85 -2.30 -0.01 0.79 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.39 9.93 7.90 -40.82 -0.32 9.61 16 33 H 0.09 1.51 8.08 -51.93 -0.42 1.09 16 34 H 0.05 0.86 7.81 -51.93 -0.41 0.45 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.05 0.54 6.88 -51.93 -0.36 0.18 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.69 7.33 -51.93 -0.38 0.30 16 39 H 0.07 0.49 7.48 -51.93 -0.39 0.10 16 40 H 0.08 0.68 6.23 -51.93 -0.32 0.35 16 41 H 0.15 1.06 5.05 -52.49 -0.26 0.79 16 42 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.18 1.63 8.06 -52.48 -0.42 1.21 16 44 H 0.10 2.45 7.11 -51.93 -0.37 2.08 16 45 H 0.04 0.75 7.70 -51.93 -0.40 0.35 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -37.76 364.09 -9.09 -46.85 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.04 Total: 11.15 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: -2.64 Total: 9.13 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -1.04 Total: -62.42 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: 0.17 Total: -27.14 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.76 -9.09 -46.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187984818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.810 kcal (2) G-P(sol) polarization free energy of solvation -37.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds