Wall clock time and date at job start Tue Mar 31 2020 16:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86807 * 119.99410 * 2 1 4 4 H 1.48493 * 109.47080 * 239.99843 * 3 2 1 5 5 H 1.48501 * 109.47177 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46841 * 120.00249 * 3 2 1 7 7 C 1.38944 * 120.00595 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00381 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00046 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00135 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99810 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.46977 * 179.97438 * 12 10 9 14 14 C 1.47903 * 111.00065 * 190.00449 * 13 12 10 15 15 C 1.53554 * 106.90247 * 211.76208 * 14 13 12 16 16 H 1.09003 * 111.73412 * 243.06112 * 15 14 13 17 17 C 1.53891 * 110.01576 * 118.33590 * 15 14 13 18 18 C 1.54047 * 103.86189 * 220.92103 * 17 15 14 19 19 N 1.46727 * 106.53082 * 28.03212 * 18 17 15 20 20 C 1.34776 * 125.23875 * 160.81966 * 19 18 17 21 21 O 1.21624 * 119.99931 * 185.40538 * 20 19 18 22 22 C 1.47265 * 119.99908 * 5.40220 * 20 19 18 23 23 C 1.46687 * 126.94463 * 6.52332 * 22 20 19 24 24 C 1.34483 * 106.33335 * 179.73878 * 23 22 20 25 25 N 1.36448 * 108.85738 * 0.24219 * 24 23 22 26 26 H 0.96996 * 124.85230 * 179.97438 * 25 24 23 27 27 C 1.34657 * 110.29681 * 359.97438 * 25 24 23 28 28 C 1.46780 * 109.51764 * 341.08667 * 19 18 17 29 29 H 1.09003 * 112.20008 * 238.16699 * 28 19 18 30 30 C 1.48334 * 110.99750 * 72.73184 * 13 12 10 31 31 H 0.96996 * 120.00853 * 359.97438 * 1 2 3 32 32 H 0.96998 * 119.99888 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47032 * 60.00410 * 12 10 9 34 34 H 1.08996 * 109.47030 * 299.99972 * 12 10 9 35 35 H 1.08995 * 109.98029 * 92.39346 * 14 13 12 36 36 H 1.09004 * 110.00795 * 331.14016 * 14 13 12 37 37 H 1.09005 * 110.55133 * 102.33063 * 17 15 14 38 38 H 1.08999 * 110.54632 * 339.51406 * 17 15 14 39 39 H 1.09001 * 110.04219 * 268.76922 * 18 17 15 40 40 H 1.08996 * 110.04450 * 147.30518 * 18 17 15 41 41 H 1.08002 * 126.83282 * 0.02562 * 23 22 20 42 42 H 1.08000 * 125.57129 * 180.24521 * 24 23 22 43 43 H 1.08004 * 125.80110 * 179.97438 * 27 25 24 44 44 H 1.08999 * 110.52637 * 277.67857 * 30 13 12 45 45 H 1.08992 * 110.53069 * 40.30054 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 3.1017 1.6966 -1.2124 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0090 -1.2032 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3236 -2.3906 -0.0016 10 6 1.9976 -3.5577 -0.0026 11 8 3.2105 -3.5576 -0.0031 12 6 1.2442 -4.8629 -0.0032 13 7 2.1989 -5.9794 -0.0050 14 6 1.5097 -7.2657 -0.2455 15 6 2.2932 -8.3419 0.5200 16 1 2.7211 -9.0850 -0.1530 17 6 1.3930 -8.9902 1.5866 18 6 2.3192 -9.1425 2.8081 19 7 3.3217 -8.0757 2.7075 20 6 4.0792 -7.6220 3.7257 21 8 4.8123 -6.6659 3.5592 22 6 4.0193 -8.2839 5.0399 23 6 3.2986 -9.5170 5.3740 24 6 3.5287 -9.7479 6.6787 25 7 4.3257 -8.7546 7.1685 26 1 4.6343 -8.6932 8.0860 27 6 4.6225 -7.8716 6.1961 28 6 3.3678 -7.5746 1.3287 29 1 4.3606 -7.6697 0.8889 30 6 2.8578 -6.1174 1.3168 31 1 -0.4851 0.8399 0.0004 32 1 0.3536 -2.3907 -0.0016 33 1 0.6172 -4.9201 -0.8930 34 1 0.6179 -4.9213 0.8869 35 1 1.5079 -7.4938 -1.3113 36 1 0.4861 -7.2156 0.1259 37 1 1.0414 -9.9653 1.2493 38 1 0.5512 -8.3396 1.8235 39 1 2.8073 -10.1169 2.7877 40 1 1.7456 -9.0306 3.7281 41 1 2.7053 -10.1219 4.7042 42 1 3.1454 -10.5832 7.2460 43 1 5.2356 -6.9897 6.3092 44 1 3.6898 -5.4187 1.4039 45 1 2.1394 -5.9569 2.1206 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187984818.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:57 Heat of formation + Delta-G solvation = -24.623602 kcal Electronic energy + Delta-G solvation = -28562.843292 eV Core-core repulsion = 24580.351939 eV Total energy + Delta-G solvation = -3982.491353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20812 -41.45183 -40.12098 -39.10848 -36.91679 -35.89389 -33.41489 -33.17037 -32.14173 -31.06297 -30.08343 -28.68138 -28.03897 -26.10505 -24.85338 -22.98258 -22.49495 -21.47119 -21.09387 -20.71664 -20.08256 -19.87875 -19.20847 -17.92586 -17.43862 -17.16711 -16.59802 -16.45540 -16.17377 -15.99879 -15.69896 -15.21837 -15.19493 -14.97618 -14.67620 -14.38414 -14.34065 -14.21217 -14.00969 -13.59160 -13.43310 -13.39028 -13.02309 -12.95276 -12.88157 -12.79839 -12.48594 -12.46013 -12.14346 -11.86953 -11.73868 -11.53652 -11.49304 -11.00609 -10.35200 -10.03221 -9.86008 -9.67563 -9.32927 -9.21881 -8.48564 -5.97443 0.75309 1.37131 1.37786 1.49554 1.58922 1.94584 2.03640 2.27139 2.48397 2.53804 2.83088 3.16758 3.31098 3.39949 3.58126 3.70903 4.01142 4.09236 4.13863 4.15823 4.24418 4.34243 4.37650 4.43010 4.45972 4.48839 4.53755 4.62956 4.72352 4.77570 4.89827 4.98638 5.00180 5.07762 5.12706 5.15403 5.33002 5.37888 5.46202 5.77702 5.79340 5.92637 5.98328 6.09245 6.57717 6.59425 6.70519 7.11150 7.26253 7.53759 8.11731 8.68949 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.002839 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.519937 B = 9861.430458 C =11182.129679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.275 1.275 7 C -0.336 4.336 8 H 0.073 0.927 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.619 6.619 12 C 0.052 3.948 13 N -0.515 5.515 14 C 0.040 3.960 15 C -0.090 4.090 16 H 0.125 0.875 17 C -0.119 4.119 18 C 0.095 3.905 19 N -0.608 5.608 20 C 0.586 3.414 21 O -0.604 6.604 22 C -0.264 4.264 23 C -0.191 4.191 24 C -0.002 4.002 25 N -0.537 5.537 26 H 0.435 0.565 27 C 0.064 3.936 28 C 0.139 3.861 29 H 0.072 0.928 30 C 0.055 3.945 31 H 0.279 0.721 32 H 0.397 0.603 33 H 0.120 0.880 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.173 0.827 42 H 0.211 0.789 43 H 0.172 0.828 44 H 0.038 0.962 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 -28.248 12.602 31.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.189 1.189 6 H -0.201 1.201 7 C -0.465 4.465 8 H 0.091 0.909 9 N -0.212 5.212 10 C 0.224 3.776 11 O -0.504 6.504 12 C -0.079 4.079 13 N -0.240 5.240 14 C -0.087 4.087 15 C -0.109 4.109 16 H 0.143 0.857 17 C -0.157 4.157 18 C -0.026 4.026 19 N -0.340 5.340 20 C 0.379 3.621 21 O -0.487 6.487 22 C -0.274 4.274 23 C -0.214 4.214 24 C -0.130 4.130 25 N -0.132 5.132 26 H 0.275 0.725 27 C -0.074 4.074 28 C 0.034 3.966 29 H 0.090 0.910 30 C -0.074 4.074 31 H 0.088 0.912 32 H 0.230 0.770 33 H 0.138 0.862 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.145 0.855 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.190 0.810 42 H 0.228 0.772 43 H 0.189 0.811 44 H 0.057 0.943 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.916 -27.500 12.306 30.141 hybrid contribution -0.112 1.681 0.849 1.886 sum -1.028 -25.819 13.155 28.995 Atomic orbital electron populations 1.69657 1.06711 1.29399 1.50310 1.26023 0.96612 1.02280 0.96214 0.85010 0.77838 0.76708 0.78878 1.19636 1.18888 1.20063 1.19593 0.92543 0.84193 1.50183 0.90882 1.41895 1.09227 1.04596 1.65510 1.20892 0.88325 0.86166 0.82170 1.90505 1.16060 1.87905 1.55970 1.21918 0.93579 0.88867 1.03543 1.64335 1.27526 1.03140 1.28986 1.23122 0.96643 0.86663 1.02292 1.22612 0.94264 0.97131 0.96878 0.85665 1.22679 0.96724 1.03673 0.92604 1.22639 0.89216 0.90412 1.00356 1.48142 1.39555 1.38451 1.07851 1.17812 0.78445 0.81812 0.83995 1.90799 1.43354 1.30131 1.84388 1.20327 1.12071 1.02597 0.92439 1.22747 1.04837 0.97095 0.96719 1.22502 0.99224 0.95939 0.95325 1.41687 1.39721 1.19713 1.12103 0.72472 1.21874 1.01193 0.96411 0.87957 1.22148 0.99717 0.92201 0.82528 0.90953 1.23071 0.97515 0.97565 0.89294 0.91185 0.76953 0.86224 0.91711 0.88276 0.91370 0.85485 0.90890 0.88775 0.89021 0.80964 0.77186 0.81082 0.94332 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.81 13.05 21.66 0.28 -51.52 16 2 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 3 Si 0.99 45.52 29.55 68.60 2.03 47.55 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.34 -20.52 9.68 84.04 0.81 -19.70 16 8 H 0.07 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -32.01 5.29 -306.98 -1.62 -33.63 16 10 C 0.44 23.27 7.61 87.66 0.67 23.93 16 11 O -0.62 -38.76 14.65 -3.07 -0.04 -38.80 16 12 C 0.05 2.03 5.21 85.56 0.45 2.48 16 13 N -0.52 -18.89 4.92 -890.16 -4.38 -23.27 16 14 C 0.04 0.92 6.24 86.30 0.54 1.46 16 15 C -0.09 -1.72 3.87 -9.68 -0.04 -1.76 16 16 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 17 C -0.12 -1.48 6.48 31.25 0.20 -1.28 16 18 C 0.09 1.46 5.04 86.69 0.44 1.90 16 19 N -0.61 -16.79 2.93 -792.49 -2.32 -19.12 16 20 C 0.59 19.85 7.64 86.62 0.66 20.51 16 21 O -0.60 -27.18 16.77 -4.11 -0.07 -27.24 16 22 C -0.26 -6.57 6.18 -19.04 -0.12 -6.68 16 23 C -0.19 -2.90 9.26 23.62 0.22 -2.68 16 24 C 0.00 -0.02 11.89 83.12 0.99 0.97 16 25 N -0.54 -5.93 5.90 -194.55 -1.15 -7.08 16 26 H 0.44 1.58 8.96 -92.71 -0.83 0.75 16 27 C 0.06 1.32 11.70 83.92 0.98 2.30 16 28 C 0.14 4.26 3.89 46.04 0.18 4.44 16 29 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 30 C 0.05 2.20 4.85 86.50 0.42 2.62 16 31 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.40 20.69 7.90 -92.71 -0.73 19.96 16 33 H 0.12 3.88 8.08 -2.39 -0.02 3.86 16 34 H 0.07 2.30 7.81 -2.39 -0.02 2.28 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 1.32 6.88 -2.38 -0.02 1.31 16 37 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.07 1.01 7.33 -2.39 -0.02 0.99 16 39 H 0.09 0.99 7.48 -2.39 -0.02 0.97 16 40 H 0.09 1.26 6.23 -2.39 -0.01 1.24 16 41 H 0.17 1.73 5.05 -2.91 -0.01 1.71 16 42 H 0.21 0.18 8.06 -2.91 -0.02 0.16 16 43 H 0.17 3.56 8.06 -2.91 -0.02 3.53 16 44 H 0.04 2.04 7.11 -2.39 -0.02 2.02 16 45 H 0.03 1.09 7.70 -2.39 -0.02 1.07 16 Total: -1.00 -92.58 364.09 -0.93 -93.51 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.51 Total: 31.29 kcal Atomic # 6 Polarization: 21.45 SS G_CDS: 6.86 Total: 28.31 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -9.19 Total: -134.62 kcal Atomic # 8 Polarization: -65.93 SS G_CDS: -0.11 Total: -66.04 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -92.58 -0.93 -93.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187984818.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.886 kcal (2) G-P(sol) polarization free energy of solvation -92.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds