Wall clock time and date at job start Tue Mar 31 2020 16:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31812 * 119.67442 * 2 1 4 4 C 1.31855 * 121.80401 * 179.97438 * 3 2 1 5 5 C 1.38286 * 120.93028 * 359.96791 * 4 3 2 6 6 C 1.38486 * 119.24199 * 0.28507 * 5 4 3 7 7 C 1.38905 * 119.67110 * 179.97438 * 2 1 3 8 8 N 1.39747 * 120.49351 * 0.02618 * 7 2 1 9 9 C 1.34779 * 120.00069 * 198.26858 * 8 7 2 10 10 O 1.21380 * 119.99941 * 5.33004 * 9 8 7 11 11 C 1.49355 * 120.00101 * 185.33569 * 9 8 7 12 12 O 1.21363 * 119.99894 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00192 * 179.97438 * 11 9 8 14 14 C 1.46491 * 120.00336 * 180.02562 * 13 11 9 15 15 C 1.53049 * 109.46010 * 275.03290 * 14 13 11 16 16 C 1.53194 * 109.31154 * 178.60038 * 15 14 13 17 17 N 1.46927 * 108.76582 * 54.65680 * 16 15 14 18 18 C 1.36934 * 120.63178 * 126.40605 * 17 16 15 19 19 H 1.08003 * 120.00060 * 333.12612 * 18 17 16 20 20 C 1.38812 * 120.00092 * 153.13126 * 18 17 16 21 21 N 1.31619 * 119.99888 * 343.38973 * 20 18 17 22 22 Si 1.86801 * 120.00177 * 163.38457 * 20 18 17 23 23 H 1.48502 * 109.46787 * 89.99973 * 22 20 18 24 24 H 1.48497 * 109.47293 * 210.00205 * 22 20 18 25 25 H 1.48495 * 109.47028 * 330.00565 * 22 20 18 26 26 C 1.46929 * 118.73367 * 306.37853 * 17 16 15 27 27 C 1.53031 * 109.46276 * 154.97869 * 14 13 11 28 28 H 1.08998 * 109.47041 * 89.99929 * 1 2 3 29 29 H 1.08996 * 109.47307 * 210.00249 * 1 2 3 30 30 H 1.09003 * 109.46637 * 330.00225 * 1 2 3 31 31 H 1.07997 * 119.53595 * 180.02562 * 4 3 2 32 32 H 1.08006 * 120.37634 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.82325 * 179.74277 * 6 5 4 34 34 H 0.97003 * 120.00561 * 18.26691 * 8 7 2 35 35 H 0.97002 * 119.99286 * 0.02562 * 13 11 9 36 36 H 1.08997 * 109.46096 * 35.00001 * 14 13 11 37 37 H 1.09001 * 109.49374 * 298.56429 * 15 14 13 38 38 H 1.08995 * 109.49825 * 58.66097 * 15 14 13 39 39 H 1.08999 * 109.59738 * 294.86284 * 16 15 14 40 40 H 1.09002 * 109.69773 * 174.50242 * 16 15 14 41 41 H 0.96996 * 120.00184 * 180.02562 * 21 20 18 42 42 H 1.08990 * 109.58846 * 293.82029 * 26 17 16 43 43 H 1.09007 * 109.70019 * 173.46546 * 26 17 16 44 44 H 1.09001 * 109.49780 * 301.33631 * 27 14 13 45 45 H 1.09002 * 109.50315 * 61.43080 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1452 0.0000 4 6 3.4772 1.1942 0.0005 5 6 4.2316 0.0353 0.0017 6 6 3.5879 -1.1909 -0.0036 7 6 2.1946 -1.2069 0.0005 8 7 1.4994 -2.4192 0.0005 9 6 2.1254 -3.5551 0.3669 10 8 3.2627 -3.5123 0.7889 11 6 1.4199 -4.8666 0.2536 12 8 0.2829 -4.9095 -0.1689 13 7 2.0461 -6.0026 0.6195 14 6 1.3543 -7.2890 0.5078 15 6 0.5086 -7.5237 1.7617 16 6 -0.2404 -8.8532 1.6261 17 7 0.7329 -9.9178 1.3470 18 6 0.7775 -11.0439 2.1249 19 1 0.4477 -11.0037 3.1525 20 6 1.2465 -12.2370 1.5926 21 7 1.3386 -12.3844 0.2879 22 14 1.7471 -13.6334 2.7279 23 1 0.5717 -14.5015 2.9928 24 1 2.8192 -14.4344 2.0845 25 1 2.2481 -13.0742 4.0091 26 6 1.6572 -9.7514 0.2170 27 6 2.3848 -8.4117 0.3683 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.9743 2.1530 0.0009 32 1 5.3105 0.0858 0.0017 33 1 4.1519 -2.1120 -0.0070 34 1 0.5662 -2.4432 -0.2631 35 1 2.9549 -5.9683 0.9568 36 1 0.7075 -7.2786 -0.3695 37 1 1.1576 -7.5592 2.6367 38 1 -0.2095 -6.7115 1.8735 39 1 -0.9557 -8.7878 0.8062 40 1 -0.7676 -9.0742 2.5542 41 1 1.6660 -13.2182 -0.0840 42 1 1.0968 -9.7594 -0.7177 43 1 2.3841 -10.5637 0.2142 44 1 3.0021 -8.2317 -0.5118 45 1 3.0159 -8.4388 1.2566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252384631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:15 Heat of formation + Delta-G solvation = -4.058594 kcal Electronic energy + Delta-G solvation = -27873.918094 eV Core-core repulsion = 23892.318507 eV Total energy + Delta-G solvation = -3981.599587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.62516 -40.27573 -38.93561 -37.46005 -35.91821 -34.56396 -33.36482 -32.23232 -31.29033 -30.28487 -29.56438 -28.04908 -26.11046 -24.81283 -23.43550 -22.47377 -22.32432 -21.69912 -20.48216 -19.75618 -18.86456 -17.75793 -17.20110 -16.76678 -16.44676 -16.34477 -15.95387 -15.47658 -14.98404 -14.82167 -14.38980 -14.21363 -14.10969 -13.82092 -13.63060 -13.52712 -13.07055 -12.87219 -12.74660 -12.68667 -12.49644 -12.35399 -11.78839 -11.56907 -11.55859 -11.17846 -10.95363 -10.75694 -10.60092 -10.39831 -10.20442 -10.12177 -9.92854 -9.85564 -9.70866 -9.44712 -9.01070 -8.60565 -8.52228 -6.77013 -5.84866 -3.26675 0.48426 0.89794 1.34803 1.99665 2.94151 3.31801 3.35081 3.41638 3.43719 3.45524 3.94262 4.18258 4.30980 4.44963 4.52035 4.74099 4.88279 5.11747 5.16783 5.19646 5.20258 5.31372 5.38489 5.44701 5.52559 5.64722 5.71121 5.76244 5.86935 5.94825 6.03227 6.18571 6.35012 6.38619 6.41455 6.46209 6.55559 6.67208 6.71899 6.88463 7.14574 7.24249 7.41477 7.57690 7.60941 7.73983 7.84843 8.38130 9.14750 9.77807 10.33319 11.24004 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.002084 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.277486 B =13430.590897 C =13838.773716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.103 3.897 3 N -0.464 5.464 4 C 0.080 3.920 5 C -0.155 4.155 6 C -0.094 4.094 7 C 0.098 3.902 8 N -0.636 5.636 9 C 0.509 3.491 10 O -0.498 6.498 11 C 0.506 3.494 12 O -0.518 6.518 13 N -0.685 5.685 14 C 0.148 3.852 15 C -0.141 4.141 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.252 4.252 19 H 0.067 0.933 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.173 3.827 27 C -0.148 4.148 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.166 0.834 34 H 0.426 0.574 35 H 0.409 0.591 36 H 0.088 0.912 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.022 0.978 40 H 0.058 0.942 41 H 0.255 0.745 42 H 0.022 0.978 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 24.048 -2.007 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.038 4.038 3 N -0.174 5.174 4 C -0.078 4.078 5 C -0.175 4.175 6 C -0.122 4.122 7 C 0.001 3.999 8 N -0.282 5.282 9 C 0.291 3.709 10 O -0.372 6.372 11 C 0.285 3.715 12 O -0.395 6.395 13 N -0.336 5.336 14 C 0.045 3.955 15 C -0.181 4.181 16 C 0.021 3.979 17 N -0.316 5.316 18 C -0.381 4.381 19 H 0.085 0.915 20 C -0.198 4.198 21 N -0.549 5.549 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.046 3.954 27 C -0.188 4.188 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.175 0.825 32 H 0.157 0.843 33 H 0.183 0.817 34 H 0.266 0.734 35 H 0.245 0.755 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.116 0.884 44 H 0.076 0.924 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.032 24.540 -2.101 24.815 hybrid contribution 0.871 -1.432 0.554 1.765 sum 3.903 23.107 -1.548 23.486 Atomic orbital electron populations 1.20735 0.88477 1.03960 1.03527 1.21062 0.97087 0.86664 0.98991 1.67503 1.10312 1.27545 1.12001 1.22722 0.89230 0.98738 0.97084 1.22120 1.01765 0.92589 1.01039 1.22180 0.92567 1.00703 0.96747 1.18679 0.92595 0.85718 1.02957 1.43168 1.16129 1.04818 1.64113 1.20699 0.86683 0.85716 0.77753 1.90671 1.17731 1.86710 1.42061 1.19682 0.86718 0.84879 0.80265 1.90793 1.17186 1.86643 1.44838 1.46246 1.18684 1.06285 1.62386 1.21313 0.94762 0.79686 0.99723 1.22416 0.99095 0.99629 0.96944 1.20867 0.91220 0.86944 0.98889 1.44118 1.35354 1.17805 1.34287 1.19191 1.39898 0.86542 0.92496 0.91535 1.25037 1.02112 0.97100 0.95516 1.70001 1.49691 1.25655 1.09545 0.86281 0.78163 0.82100 0.80141 1.21373 1.21535 1.20499 1.20804 0.93097 0.92217 0.89271 1.22586 0.97736 0.97284 1.01175 0.89907 0.90846 0.89602 0.82477 0.84254 0.81676 0.73437 0.75507 0.89374 0.91950 0.92575 0.96038 0.92328 0.93539 0.96012 0.88443 0.92431 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.63 36.01 0.35 -0.42 16 2 C 0.10 1.00 6.80 -82.35 -0.56 0.44 16 3 N -0.46 -4.75 10.27 -9.30 -0.10 -4.85 16 4 C 0.08 0.67 11.18 -17.52 -0.20 0.47 16 5 C -0.15 -1.27 10.10 -39.47 -0.40 -1.67 16 6 C -0.09 -0.97 8.91 -39.08 -0.35 -1.31 16 7 C 0.10 1.01 6.51 -83.59 -0.54 0.47 16 8 N -0.64 -6.38 5.09 -10.20 -0.05 -6.43 16 9 C 0.51 6.03 7.75 -11.63 -0.09 5.94 16 10 O -0.50 -6.42 13.36 5.47 0.07 -6.35 16 11 C 0.51 6.78 7.85 -11.63 -0.09 6.68 16 12 O -0.52 -7.96 16.15 5.49 0.09 -7.87 16 13 N -0.68 -9.25 5.07 -54.23 -0.27 -9.52 16 14 C 0.15 2.38 2.42 -67.89 -0.16 2.22 16 15 C -0.14 -2.40 5.65 -26.61 -0.15 -2.55 16 16 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 17 N -0.59 -14.27 3.00 -172.31 -0.52 -14.78 16 18 C -0.25 -6.69 9.60 -15.06 -0.14 -6.84 16 19 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 20 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 21 N -0.90 -25.47 11.07 55.49 0.61 -24.85 16 22 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.17 3.89 5.31 -3.71 -0.02 3.87 16 27 C -0.15 -2.57 5.55 -26.61 -0.15 -2.72 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.44 6.86 -51.93 -0.36 0.09 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.17 1.80 5.45 -52.49 -0.29 1.52 16 34 H 0.43 3.62 6.64 -40.82 -0.27 3.35 16 35 H 0.41 4.94 8.07 -40.82 -0.33 4.61 16 36 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.10 2.47 5.95 -51.93 -0.31 2.16 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -30.93 369.54 -8.37 -39.30 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.13 Total: 6.14 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: -2.62 Total: 7.51 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -0.32 Total: -60.44 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.16 Total: -14.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.93 -8.37 -39.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252384631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.245 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds