Wall clock time and date at job start Tue Mar 31 2020 16:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31812 * 119.67442 * 2 1 4 4 C 1.31855 * 121.80401 * 179.97438 * 3 2 1 5 5 C 1.38286 * 120.93028 * 359.96791 * 4 3 2 6 6 C 1.38486 * 119.24199 * 0.28507 * 5 4 3 7 7 C 1.38905 * 119.67110 * 179.97438 * 2 1 3 8 8 N 1.39747 * 120.49351 * 0.02618 * 7 2 1 9 9 C 1.34779 * 120.00069 * 198.26858 * 8 7 2 10 10 O 1.21380 * 119.99941 * 5.33004 * 9 8 7 11 11 C 1.49355 * 120.00101 * 185.33569 * 9 8 7 12 12 O 1.21363 * 119.99894 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00192 * 179.97438 * 11 9 8 14 14 C 1.46491 * 120.00336 * 180.02562 * 13 11 9 15 15 C 1.53049 * 109.46010 * 275.03290 * 14 13 11 16 16 C 1.53194 * 109.31154 * 178.60038 * 15 14 13 17 17 N 1.46927 * 108.76582 * 54.65680 * 16 15 14 18 18 C 1.36934 * 120.63178 * 126.40605 * 17 16 15 19 19 H 1.08003 * 120.00060 * 333.12612 * 18 17 16 20 20 C 1.38812 * 120.00092 * 153.13126 * 18 17 16 21 21 N 1.31619 * 119.99888 * 343.38973 * 20 18 17 22 22 Si 1.86801 * 120.00177 * 163.38457 * 20 18 17 23 23 H 1.48502 * 109.46787 * 89.99973 * 22 20 18 24 24 H 1.48497 * 109.47293 * 210.00205 * 22 20 18 25 25 H 1.48495 * 109.47028 * 330.00565 * 22 20 18 26 26 C 1.46929 * 118.73367 * 306.37853 * 17 16 15 27 27 C 1.53031 * 109.46276 * 154.97869 * 14 13 11 28 28 H 1.08998 * 109.47041 * 89.99929 * 1 2 3 29 29 H 1.08996 * 109.47307 * 210.00249 * 1 2 3 30 30 H 1.09003 * 109.46637 * 330.00225 * 1 2 3 31 31 H 1.07997 * 119.53595 * 180.02562 * 4 3 2 32 32 H 1.08006 * 120.37634 * 179.97438 * 5 4 3 33 33 H 1.08001 * 120.82325 * 179.74277 * 6 5 4 34 34 H 0.97003 * 120.00561 * 18.26691 * 8 7 2 35 35 H 0.97002 * 119.99286 * 0.02562 * 13 11 9 36 36 H 1.08997 * 109.46096 * 35.00001 * 14 13 11 37 37 H 1.09001 * 109.49374 * 298.56429 * 15 14 13 38 38 H 1.08995 * 109.49825 * 58.66097 * 15 14 13 39 39 H 1.08999 * 109.59738 * 294.86284 * 16 15 14 40 40 H 1.09002 * 109.69773 * 174.50242 * 16 15 14 41 41 H 0.96996 * 120.00184 * 180.02562 * 21 20 18 42 42 H 1.08990 * 109.58846 * 293.82029 * 26 17 16 43 43 H 1.09007 * 109.70019 * 173.46546 * 26 17 16 44 44 H 1.09001 * 109.49780 * 301.33631 * 27 14 13 45 45 H 1.09002 * 109.50315 * 61.43080 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1452 0.0000 4 6 3.4772 1.1942 0.0005 5 6 4.2316 0.0353 0.0017 6 6 3.5879 -1.1909 -0.0036 7 6 2.1946 -1.2069 0.0005 8 7 1.4994 -2.4192 0.0005 9 6 2.1254 -3.5551 0.3669 10 8 3.2627 -3.5123 0.7889 11 6 1.4199 -4.8666 0.2536 12 8 0.2829 -4.9095 -0.1689 13 7 2.0461 -6.0026 0.6195 14 6 1.3543 -7.2890 0.5078 15 6 0.5086 -7.5237 1.7617 16 6 -0.2404 -8.8532 1.6261 17 7 0.7329 -9.9178 1.3470 18 6 0.7775 -11.0439 2.1249 19 1 0.4477 -11.0037 3.1525 20 6 1.2465 -12.2370 1.5926 21 7 1.3386 -12.3844 0.2879 22 14 1.7471 -13.6334 2.7279 23 1 0.5717 -14.5015 2.9928 24 1 2.8192 -14.4344 2.0845 25 1 2.2481 -13.0742 4.0091 26 6 1.6572 -9.7514 0.2170 27 6 2.3848 -8.4117 0.3683 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 3.9743 2.1530 0.0009 32 1 5.3105 0.0858 0.0017 33 1 4.1519 -2.1120 -0.0070 34 1 0.5662 -2.4432 -0.2631 35 1 2.9549 -5.9683 0.9568 36 1 0.7075 -7.2786 -0.3695 37 1 1.1576 -7.5592 2.6367 38 1 -0.2095 -6.7115 1.8735 39 1 -0.9557 -8.7878 0.8062 40 1 -0.7676 -9.0742 2.5542 41 1 1.6660 -13.2182 -0.0840 42 1 1.0968 -9.7594 -0.7177 43 1 2.3841 -10.5637 0.2142 44 1 3.0021 -8.2317 -0.5118 45 1 3.0159 -8.4388 1.2566 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252384631.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:14 Heat of formation + Delta-G solvation = -24.978450 kcal Electronic energy + Delta-G solvation = -27874.825247 eV Core-core repulsion = 23892.318507 eV Total energy + Delta-G solvation = -3982.506740 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.49239 -41.20320 -39.98397 -38.91268 -36.84774 -35.96792 -34.05849 -33.91098 -32.05290 -31.85589 -31.24326 -28.69964 -27.46849 -26.18067 -24.49891 -23.92837 -23.32434 -22.91827 -21.54021 -21.11645 -20.02809 -18.84446 -18.50582 -17.94961 -17.37564 -17.13941 -17.07750 -16.72941 -16.41994 -15.80904 -15.64621 -15.36859 -15.30948 -15.09866 -14.79914 -14.71460 -14.33347 -14.24744 -14.12738 -13.41616 -13.26001 -13.24337 -13.03059 -12.99055 -12.78927 -12.59934 -12.50433 -12.35872 -12.23289 -12.04285 -11.88040 -11.60950 -11.40053 -11.06567 -10.62624 -10.56145 -10.31588 -10.24419 -9.33001 -8.72160 -7.87766 -5.32069 -0.31865 0.19173 0.47042 1.02671 1.48272 1.50072 1.59370 1.94145 2.36850 2.52047 2.76514 3.15173 3.29141 3.36349 3.64899 3.66005 3.82407 3.85504 3.97293 4.10089 4.19847 4.27392 4.43765 4.54333 4.62117 4.63127 4.69667 4.70220 4.82067 4.83313 4.94999 5.01413 5.04426 5.12435 5.14393 5.19302 5.26500 5.30799 5.48120 5.64301 5.65631 5.72077 5.78371 6.17272 6.39085 6.48134 6.77832 6.93750 7.14691 7.84691 8.35611 9.19125 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.002084 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.277486 B =13430.590897 C =13838.773716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.097 3.903 3 N -0.486 5.486 4 C 0.079 3.921 5 C -0.152 4.152 6 C -0.109 4.109 7 C 0.079 3.921 8 N -0.624 5.624 9 C 0.515 3.485 10 O -0.509 6.509 11 C 0.510 3.490 12 O -0.537 6.537 13 N -0.678 5.678 14 C 0.160 3.840 15 C -0.127 4.127 16 C 0.145 3.855 17 N -0.610 5.610 18 C -0.260 4.260 19 H 0.068 0.932 20 C -0.051 4.051 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.271 1.271 26 C 0.177 3.823 27 C -0.132 4.132 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.187 0.813 32 H 0.166 0.834 33 H 0.157 0.843 34 H 0.433 0.567 35 H 0.419 0.581 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.015 0.985 40 H 0.059 0.941 41 H 0.251 0.749 42 H 0.000 1.000 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 26.144 -1.299 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.043 4.043 3 N -0.195 5.195 4 C -0.078 4.078 5 C -0.172 4.172 6 C -0.137 4.137 7 C -0.018 4.018 8 N -0.270 5.270 9 C 0.298 3.702 10 O -0.384 6.384 11 C 0.290 3.710 12 O -0.415 6.415 13 N -0.330 5.330 14 C 0.056 3.944 15 C -0.167 4.167 16 C 0.019 3.981 17 N -0.334 5.334 18 C -0.391 4.391 19 H 0.086 0.914 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.795 3.205 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.195 1.195 26 C 0.050 3.950 27 C -0.171 4.171 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.204 0.796 32 H 0.184 0.816 33 H 0.174 0.826 34 H 0.273 0.727 35 H 0.256 0.744 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.018 0.982 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.781 26.691 -1.384 26.993 hybrid contribution 0.607 -1.966 0.301 2.080 sum 4.388 24.724 -1.083 25.134 Atomic orbital electron populations 1.20816 0.86939 1.04468 1.04485 1.21411 0.98255 0.86329 0.98332 1.67579 1.11347 1.27776 1.12840 1.23272 0.88854 1.00116 0.95570 1.22413 1.03172 0.91713 0.99906 1.22275 0.92735 1.01279 0.97400 1.18796 0.92862 0.85771 1.04344 1.43035 1.16330 1.04351 1.63303 1.20258 0.86393 0.85446 0.78129 1.90680 1.18063 1.86743 1.42949 1.19883 0.86377 0.85305 0.79402 1.90790 1.18109 1.87006 1.45547 1.45950 1.19001 1.05405 1.62604 1.20930 0.94143 0.80542 0.98777 1.22222 0.99176 0.97849 0.97445 1.20974 0.90980 0.87629 0.98561 1.44375 1.36679 1.18070 1.34274 1.19508 1.39165 0.87489 0.92898 0.91430 1.25763 1.02736 0.99398 0.96742 1.70156 1.50919 1.25985 1.11069 0.85287 0.77423 0.79191 0.78593 1.21386 1.21863 1.19542 1.20609 0.92263 0.94048 0.88050 1.22304 0.97592 0.94797 1.02445 0.88665 0.90098 0.89307 0.79598 0.81598 0.82556 0.72660 0.74351 0.90625 0.91603 0.91254 0.96734 0.92220 0.94027 0.98233 0.91509 0.90289 0.91280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.63 71.24 0.69 -0.67 16 2 C 0.10 1.75 6.80 42.72 0.29 2.04 16 3 N -0.49 -9.10 10.27 -183.34 -1.88 -10.98 16 4 C 0.08 1.14 11.18 84.70 0.95 2.09 16 5 C -0.15 -2.16 10.10 22.34 0.23 -1.94 16 6 C -0.11 -2.09 8.91 22.59 0.20 -1.89 16 7 C 0.08 1.53 6.51 38.30 0.25 1.78 16 8 N -0.62 -11.69 5.09 -304.52 -1.55 -13.24 16 9 C 0.52 11.49 7.75 87.24 0.68 12.17 16 10 O -0.51 -12.44 13.36 -3.34 -0.04 -12.48 16 11 C 0.51 12.89 7.85 87.24 0.68 13.57 16 12 O -0.54 -15.77 16.15 -3.29 -0.05 -15.82 16 13 N -0.68 -17.10 5.07 -443.85 -2.25 -19.35 16 14 C 0.16 4.96 2.42 45.02 0.11 5.07 16 15 C -0.13 -4.16 5.65 30.68 0.17 -3.98 16 16 C 0.14 5.87 6.52 86.36 0.56 6.43 16 17 N -0.61 -29.67 3.00 -699.08 -2.10 -31.77 16 18 C -0.26 -13.95 9.60 84.03 0.81 -13.14 16 19 H 0.07 3.53 7.88 -2.91 -0.02 3.50 16 20 C -0.05 -2.79 4.94 84.86 0.42 -2.38 16 21 N -0.93 -53.99 11.07 21.65 0.24 -53.75 16 22 Si 0.97 43.93 29.59 68.60 2.03 45.96 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 C 0.18 8.10 5.31 86.36 0.46 8.56 16 27 C -0.13 -4.46 5.55 30.67 0.17 -4.29 16 28 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 0.85 6.86 -2.39 -0.02 0.84 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 32 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.16 3.26 5.45 -2.91 -0.02 3.24 16 34 H 0.43 6.75 6.64 -92.71 -0.62 6.14 16 35 H 0.42 9.22 8.07 -92.71 -0.75 8.47 16 36 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 41 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.07 3.48 5.95 -2.38 -0.01 3.47 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -66.77 369.54 0.73 -66.04 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -0.32 Total: 21.97 kcal Atomic # 6 Polarization: 16.76 SS G_CDS: 6.66 Total: 23.42 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -7.54 Total: -129.08 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.10 Total: -28.30 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -66.77 0.73 -66.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252384631.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.060 kcal (2) G-P(sol) polarization free energy of solvation -66.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds