Wall clock time and date at job start Tue Mar 31 2020 16:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47089 * 270.00192 * 3 2 1 5 5 H 1.48500 * 109.47109 * 30.00034 * 3 2 1 6 6 H 1.48506 * 109.47170 * 150.00149 * 3 2 1 7 7 C 1.37881 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99853 * 175.14517 * 7 2 1 9 9 C 1.50694 * 120.00392 * 355.41440 * 7 2 1 10 10 C 1.53005 * 115.55071 * 274.92968 * 9 7 2 11 11 N 1.46497 * 109.47129 * 294.81535 * 10 9 7 12 12 C 1.34769 * 120.00011 * 184.78311 * 11 10 9 13 13 O 1.21368 * 120.00609 * 5.03003 * 12 11 10 14 14 C 1.49314 * 120.00031 * 185.03887 * 12 11 10 15 15 O 1.21391 * 119.99512 * 5.08158 * 14 12 11 16 16 N 1.34777 * 119.99843 * 185.08835 * 14 12 11 17 17 C 1.39200 * 119.99618 * 179.97438 * 16 14 12 18 18 C 1.36215 * 126.27137 * 0.02810 * 17 16 14 19 19 C 1.39697 * 107.85650 * 179.97438 * 18 17 16 20 20 N 1.30848 * 108.45716 * 359.97438 * 19 18 17 21 21 N 1.35853 * 126.26888 * 179.70863 * 17 16 14 22 22 C 1.46496 * 126.09804 * 0.04250 * 21 17 16 23 23 C 1.53788 * 113.61390 * 219.13176 * 22 21 17 24 24 C 1.53952 * 87.02204 * 220.05076 * 23 22 21 25 25 C 1.53779 * 113.61352 * 121.52954 * 22 21 17 26 26 C 1.53001 * 117.49960 * 129.25338 * 9 7 2 27 27 C 1.53002 * 117.49609 * 60.59710 * 9 7 2 28 28 H 0.96996 * 119.99588 * 5.00266 * 1 2 3 29 29 H 1.09004 * 109.47254 * 54.81826 * 10 9 7 30 30 H 1.09002 * 109.46969 * 174.81474 * 10 9 7 31 31 H 0.97000 * 119.99901 * 4.77722 * 11 10 9 32 32 H 0.96991 * 120.00108 * 359.97438 * 16 14 12 33 33 H 1.07999 * 126.07189 * 359.94147 * 18 17 16 34 34 H 1.07998 * 125.76753 * 180.02562 * 19 18 17 35 35 H 1.09003 * 112.85361 * 350.32540 * 22 21 17 36 36 H 1.09004 * 113.61448 * 334.57155 * 23 22 21 37 37 H 1.09000 * 113.61473 * 105.46828 * 23 22 21 38 38 H 1.09005 * 113.53508 * 270.81246 * 24 23 22 39 39 H 1.08996 * 113.74469 * 139.94251 * 24 23 22 40 40 H 1.09007 * 113.61065 * 254.52674 * 25 22 21 41 41 H 1.09000 * 113.61756 * 25.43129 * 25 22 21 42 42 H 1.08995 * 117.49983 * 0.02562 * 26 9 7 43 43 H 1.09003 * 117.49466 * 145.02604 * 26 9 7 44 44 H 1.09003 * 117.50088 * 214.98272 * 27 9 7 45 45 H 1.09000 * 117.49885 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 -0.0797 9 6 1.2546 -2.4971 0.1032 10 6 0.9189 -2.9540 1.5243 11 7 2.1581 -3.2482 2.2482 12 6 2.1056 -3.7616 3.4932 13 8 1.0360 -4.0655 3.9798 14 6 3.3632 -3.9564 4.2741 15 8 4.4223 -3.5679 3.8257 16 7 3.3225 -4.5636 5.4767 17 6 4.4951 -4.7456 6.2044 18 6 5.7461 -4.3622 5.8260 19 6 6.6326 -4.7314 6.8406 20 7 5.9515 -5.3132 7.7944 21 7 4.6005 -5.3329 7.4249 22 6 3.4982 -5.8902 8.2127 23 6 3.6190 -5.6162 9.7212 24 6 3.1122 -7.0531 9.9412 25 6 3.6722 -7.3811 8.5470 26 6 1.5728 -3.5796 -0.9302 27 6 0.2452 -2.8210 -1.0000 28 1 -0.4849 0.8368 -0.0733 29 1 0.3751 -2.1633 2.0413 30 1 0.3015 -3.8513 1.4812 31 1 3.0164 -3.0736 1.8314 32 1 2.4762 -4.8737 5.8350 33 1 6.0066 -3.8620 4.9049 34 1 7.6996 -4.5642 6.8384 35 1 2.5185 -5.6462 7.8018 36 1 4.6445 -5.4588 10.0556 37 1 2.9328 -4.8500 10.0821 38 1 2.0265 -7.1269 10.0041 39 1 3.6197 -7.5784 10.7502 40 1 3.0288 -8.0378 7.9614 41 1 4.7122 -7.7072 8.5599 42 1 2.3248 -3.3494 -1.6849 43 1 1.5426 -4.6172 -0.5977 44 1 -0.6580 -3.3599 -0.7134 45 1 0.1231 -2.0914 -1.8005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262711009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:58 Heat of formation + Delta-G solvation = 64.919891 kcal Electronic energy + Delta-G solvation = -27918.970518 eV Core-core repulsion = 23940.362062 eV Total energy + Delta-G solvation = -3978.608456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76896 -40.33006 -38.77870 -38.31197 -36.83688 -35.31799 -33.49431 -32.02702 -31.69202 -29.38268 -27.18231 -26.11467 -25.63964 -25.50354 -24.11598 -22.06605 -21.31515 -20.92321 -19.91983 -19.75735 -19.32587 -18.70624 -17.59369 -16.56093 -16.25346 -16.03615 -15.83271 -15.49453 -15.12382 -14.93591 -14.70929 -14.15927 -14.09453 -13.87039 -13.44330 -13.35332 -13.14699 -12.91936 -12.79457 -12.59902 -12.01465 -11.70849 -11.63744 -11.49225 -11.23009 -11.06969 -11.04175 -11.01706 -10.99157 -10.60765 -10.56236 -10.30431 -9.71838 -9.44274 -9.16765 -9.07144 -8.63829 -8.49908 -8.27010 -8.23517 -6.14080 -4.24187 1.17186 1.78678 1.97615 2.61822 2.82017 3.23732 3.31986 3.35586 3.37402 3.66990 3.95765 4.08811 4.24555 4.31591 4.36739 4.63479 4.73054 4.89113 5.13378 5.18685 5.26374 5.30019 5.35268 5.39765 5.48265 5.51220 5.57430 5.74877 5.86632 5.90365 6.06635 6.20561 6.31320 6.38452 6.56181 6.61918 6.66803 6.72608 6.84187 6.99282 7.02570 7.24289 7.42173 7.54001 7.64599 7.76062 7.89551 8.24517 8.30097 8.78299 9.44125 10.92829 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.002559 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.877000 B =10939.705791 C =11508.684771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.020 3.980 10 C 0.158 3.842 11 N -0.659 5.659 12 C 0.503 3.497 13 O -0.537 6.537 14 C 0.516 3.484 15 O -0.479 6.479 16 N -0.628 5.628 17 C 0.304 3.696 18 C -0.278 4.278 19 C 0.059 3.941 20 N -0.288 5.288 21 N -0.376 5.376 22 C 0.127 3.873 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.210 4.210 27 C -0.138 4.138 28 H 0.262 0.738 29 H 0.076 0.924 30 H 0.050 0.950 31 H 0.416 0.584 32 H 0.420 0.580 33 H 0.174 0.826 34 H 0.186 0.814 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.137 -12.503 15.533 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.019 3.981 10 C 0.036 3.964 11 N -0.308 5.308 12 C 0.282 3.718 13 O -0.416 6.416 14 C 0.297 3.703 15 O -0.349 6.349 16 N -0.277 5.277 17 C 0.085 3.915 18 C -0.309 4.309 19 C -0.127 4.127 20 N -0.110 5.110 21 N -0.164 5.164 22 C 0.025 3.975 23 C -0.175 4.175 24 C -0.177 4.177 25 C -0.181 4.181 26 C -0.247 4.247 27 C -0.177 4.177 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.252 0.748 32 H 0.258 0.742 33 H 0.191 0.809 34 H 0.203 0.797 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.861 -12.840 16.714 21.876 hybrid contribution 0.178 1.331 -0.872 1.601 sum 6.040 -11.508 15.842 20.491 Atomic orbital electron populations 1.69981 1.05896 1.27021 1.48223 1.24991 0.94846 0.99074 0.94138 0.86613 0.80097 0.83310 0.78221 1.20604 1.21160 1.19567 1.20384 0.92829 0.88429 1.52342 0.91931 1.19027 0.99896 0.93657 0.85511 1.21292 0.83058 0.98586 0.93428 1.45895 1.13109 1.58642 1.13185 1.19448 0.87811 0.80943 0.83638 1.90745 1.29825 1.51254 1.69741 1.20632 0.90753 0.77976 0.80906 1.90726 1.30800 1.45470 1.67946 1.42486 1.08616 1.58026 1.18611 1.18163 0.88299 0.98681 0.86359 1.21731 0.89325 1.14748 1.05098 1.23759 1.00388 0.96962 0.91616 1.77320 0.85319 1.25110 1.23231 1.48849 1.06698 1.48115 1.12774 1.23006 0.87306 0.95325 0.91865 1.23324 1.03557 0.97678 0.92951 1.22751 1.01172 0.96428 0.97357 1.23381 1.03125 0.94536 0.97030 1.23043 1.00776 0.95483 1.05379 1.22480 0.90767 1.01245 1.03162 0.92800 0.90532 0.93143 0.74757 0.74245 0.80878 0.79669 0.86433 0.88145 0.90594 0.89556 0.90298 0.90564 0.88627 0.90138 0.91619 0.91705 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.49 12.65 55.43 0.70 -22.79 16 2 C 0.07 1.91 5.43 -17.82 -0.10 1.81 16 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.50 -12.60 8.59 -34.44 -0.30 -12.90 16 8 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 9 C 0.02 0.45 1.47 -155.66 -0.23 0.22 16 10 C 0.16 3.33 5.53 -4.04 -0.02 3.30 16 11 N -0.66 -12.26 5.46 -60.77 -0.33 -12.60 16 12 C 0.50 8.70 7.88 -11.65 -0.09 8.61 16 13 O -0.54 -9.99 16.47 5.48 0.09 -9.90 16 14 C 0.52 7.97 7.84 -11.65 -0.09 7.88 16 15 O -0.48 -8.11 13.62 5.46 0.07 -8.03 16 16 N -0.63 -8.15 5.40 -11.79 -0.06 -8.21 16 17 C 0.30 4.07 7.68 -152.85 -1.17 2.89 16 18 C -0.28 -3.81 9.65 -39.76 -0.38 -4.19 16 19 C 0.06 0.69 12.00 -17.43 -0.21 0.48 16 20 N -0.29 -3.59 12.02 30.59 0.37 -3.22 16 21 N -0.38 -4.45 3.71 -53.01 -0.20 -4.64 16 22 C 0.13 1.11 4.63 -67.12 -0.31 0.80 16 23 C -0.14 -1.04 7.78 -25.82 -0.20 -1.24 16 24 C -0.14 -0.83 8.09 -25.83 -0.21 -1.03 16 25 C -0.14 -1.06 7.88 -25.92 -0.20 -1.27 16 26 C -0.21 -4.19 9.96 -26.69 -0.27 -4.45 16 27 C -0.14 -3.02 9.14 -26.69 -0.24 -3.27 16 28 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 29 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 30 H 0.05 1.01 8.05 -51.93 -0.42 0.60 16 31 H 0.42 7.62 7.83 -40.82 -0.32 7.30 16 32 H 0.42 4.61 7.22 -40.82 -0.29 4.31 16 33 H 0.17 2.55 5.83 -52.49 -0.31 2.25 16 34 H 0.19 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.12 0.85 7.15 -51.93 -0.37 0.48 16 36 H 0.10 0.90 7.74 -51.93 -0.40 0.50 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -29.00 383.19 -8.94 -37.94 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -6.31 Total: 12.72 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -4.03 Total: -2.35 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.48 Total: -51.46 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: 0.16 Total: -17.93 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.00 -8.94 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262711009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.863 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds