Wall clock time and date at job start Tue Mar 31 2020 16:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00148 * 2 1 4 4 H 1.48506 * 109.47089 * 270.00192 * 3 2 1 5 5 H 1.48500 * 109.47109 * 30.00034 * 3 2 1 6 6 H 1.48506 * 109.47170 * 150.00149 * 3 2 1 7 7 C 1.37881 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99853 * 175.14517 * 7 2 1 9 9 C 1.50694 * 120.00392 * 355.41440 * 7 2 1 10 10 C 1.53005 * 115.55071 * 274.92968 * 9 7 2 11 11 N 1.46497 * 109.47129 * 294.81535 * 10 9 7 12 12 C 1.34769 * 120.00011 * 184.78311 * 11 10 9 13 13 O 1.21368 * 120.00609 * 5.03003 * 12 11 10 14 14 C 1.49314 * 120.00031 * 185.03887 * 12 11 10 15 15 O 1.21391 * 119.99512 * 5.08158 * 14 12 11 16 16 N 1.34777 * 119.99843 * 185.08835 * 14 12 11 17 17 C 1.39200 * 119.99618 * 179.97438 * 16 14 12 18 18 C 1.36215 * 126.27137 * 0.02810 * 17 16 14 19 19 C 1.39697 * 107.85650 * 179.97438 * 18 17 16 20 20 N 1.30848 * 108.45716 * 359.97438 * 19 18 17 21 21 N 1.35853 * 126.26888 * 179.70863 * 17 16 14 22 22 C 1.46496 * 126.09804 * 0.04250 * 21 17 16 23 23 C 1.53788 * 113.61390 * 219.13176 * 22 21 17 24 24 C 1.53952 * 87.02204 * 220.05076 * 23 22 21 25 25 C 1.53779 * 113.61352 * 121.52954 * 22 21 17 26 26 C 1.53001 * 117.49960 * 129.25338 * 9 7 2 27 27 C 1.53002 * 117.49609 * 60.59710 * 9 7 2 28 28 H 0.96996 * 119.99588 * 5.00266 * 1 2 3 29 29 H 1.09004 * 109.47254 * 54.81826 * 10 9 7 30 30 H 1.09002 * 109.46969 * 174.81474 * 10 9 7 31 31 H 0.97000 * 119.99901 * 4.77722 * 11 10 9 32 32 H 0.96991 * 120.00108 * 359.97438 * 16 14 12 33 33 H 1.07999 * 126.07189 * 359.94147 * 18 17 16 34 34 H 1.07998 * 125.76753 * 180.02562 * 19 18 17 35 35 H 1.09003 * 112.85361 * 350.32540 * 22 21 17 36 36 H 1.09004 * 113.61448 * 334.57155 * 23 22 21 37 37 H 1.09000 * 113.61473 * 105.46828 * 23 22 21 38 38 H 1.09005 * 113.53508 * 270.81246 * 24 23 22 39 39 H 1.08996 * 113.74469 * 139.94251 * 24 23 22 40 40 H 1.09007 * 113.61065 * 254.52674 * 25 22 21 41 41 H 1.09000 * 113.61756 * 25.43129 * 25 22 21 42 42 H 1.08995 * 117.49983 * 0.02562 * 26 9 7 43 43 H 1.09003 * 117.49466 * 145.02604 * 26 9 7 44 44 H 1.09003 * 117.50088 * 214.98272 * 27 9 7 45 45 H 1.09000 * 117.49885 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 -0.0797 9 6 1.2546 -2.4971 0.1032 10 6 0.9189 -2.9540 1.5243 11 7 2.1581 -3.2482 2.2482 12 6 2.1056 -3.7616 3.4932 13 8 1.0360 -4.0655 3.9798 14 6 3.3632 -3.9564 4.2741 15 8 4.4223 -3.5679 3.8257 16 7 3.3225 -4.5636 5.4767 17 6 4.4951 -4.7456 6.2044 18 6 5.7461 -4.3622 5.8260 19 6 6.6326 -4.7314 6.8406 20 7 5.9515 -5.3132 7.7944 21 7 4.6005 -5.3329 7.4249 22 6 3.4982 -5.8902 8.2127 23 6 3.6190 -5.6162 9.7212 24 6 3.1122 -7.0531 9.9412 25 6 3.6722 -7.3811 8.5470 26 6 1.5728 -3.5796 -0.9302 27 6 0.2452 -2.8210 -1.0000 28 1 -0.4849 0.8368 -0.0733 29 1 0.3751 -2.1633 2.0413 30 1 0.3015 -3.8513 1.4812 31 1 3.0164 -3.0736 1.8314 32 1 2.4762 -4.8737 5.8350 33 1 6.0066 -3.8620 4.9049 34 1 7.6996 -4.5642 6.8384 35 1 2.5185 -5.6462 7.8018 36 1 4.6445 -5.4588 10.0556 37 1 2.9328 -4.8500 10.0821 38 1 2.0265 -7.1269 10.0041 39 1 3.6197 -7.5784 10.7502 40 1 3.0288 -8.0378 7.9614 41 1 4.7122 -7.7072 8.5599 42 1 2.3248 -3.3494 -1.6849 43 1 1.5426 -4.6172 -0.5977 44 1 -0.6580 -3.3599 -0.7134 45 1 0.1231 -2.0914 -1.8005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262711009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:57 Heat of formation + Delta-G solvation = 47.912410 kcal Electronic energy + Delta-G solvation = -27919.708017 eV Core-core repulsion = 23940.362062 eV Total energy + Delta-G solvation = -3979.345955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.78707 -41.56280 -39.87810 -39.25188 -38.50208 -36.50848 -35.00346 -33.96008 -32.56695 -30.45200 -28.72691 -27.43226 -26.70137 -26.30508 -25.46023 -23.07357 -22.87193 -22.04945 -21.42405 -20.96128 -20.40542 -19.69045 -18.84744 -17.93984 -17.85479 -17.33231 -16.66596 -16.59040 -16.42482 -16.24046 -16.17510 -15.68154 -15.28401 -15.04736 -14.91832 -14.47589 -14.14685 -14.01258 -13.72657 -13.56108 -13.49690 -13.27411 -12.96083 -12.85968 -12.83076 -12.38134 -12.32268 -12.17087 -12.00590 -11.82644 -11.60701 -11.42838 -11.38472 -10.98239 -10.88481 -10.45733 -10.17999 -9.98621 -9.95313 -9.28730 -8.10708 -6.24055 -0.06265 0.68484 0.90642 1.41196 1.45552 1.53029 1.60810 1.79579 2.08575 2.40684 2.45349 3.16465 3.22596 3.31038 3.47709 3.56374 3.62173 3.81003 3.97867 4.12237 4.19350 4.34603 4.50744 4.51946 4.62918 4.68630 4.70656 4.74064 4.75443 4.89947 4.92390 4.98328 4.99759 5.03813 5.04700 5.27773 5.30015 5.40013 5.52857 5.65078 5.70078 5.75074 5.77951 5.90143 6.28868 6.36199 6.54016 6.68205 6.81890 6.85833 7.45959 8.95664 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.002559 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.877000 B =10939.705791 C =11508.684771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.030 3.970 3 Si 0.943 3.057 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.508 4.508 8 H 0.059 0.941 9 C -0.003 4.003 10 C 0.174 3.826 11 N -0.662 5.662 12 C 0.509 3.491 13 O -0.548 6.548 14 C 0.524 3.476 15 O -0.495 6.495 16 N -0.612 5.612 17 C 0.290 3.710 18 C -0.295 4.295 19 C 0.060 3.940 20 N -0.297 5.297 21 N -0.371 5.371 22 C 0.109 3.891 23 C -0.137 4.137 24 C -0.125 4.125 25 C -0.140 4.140 26 C -0.181 4.181 27 C -0.146 4.146 28 H 0.260 0.740 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.417 0.583 32 H 0.430 0.570 33 H 0.161 0.839 34 H 0.216 0.784 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 -13.743 16.741 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.172 4.172 3 Si 0.769 3.231 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.545 4.545 8 H 0.077 0.923 9 C -0.004 4.004 10 C 0.051 3.949 11 N -0.312 5.312 12 C 0.289 3.711 13 O -0.427 6.427 14 C 0.305 3.695 15 O -0.367 6.367 16 N -0.261 5.261 17 C 0.070 3.930 18 C -0.327 4.327 19 C -0.125 4.125 20 N -0.119 5.119 21 N -0.159 5.159 22 C 0.008 3.992 23 C -0.175 4.175 24 C -0.163 4.163 25 C -0.179 4.179 26 C -0.218 4.218 27 C -0.184 4.184 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.254 0.746 32 H 0.269 0.731 33 H 0.179 0.821 34 H 0.233 0.767 35 H 0.151 0.849 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.371 -14.109 17.959 23.710 hybrid contribution 0.045 1.661 -1.191 2.044 sum 6.416 -12.448 16.768 21.847 Atomic orbital electron populations 1.70075 1.06907 1.27342 1.49679 1.25605 0.95485 1.01700 0.94376 0.85788 0.78946 0.80233 0.78122 1.20250 1.21517 1.19372 1.20667 0.92884 0.89749 1.51245 0.92294 1.19069 1.00723 0.93950 0.86641 1.20899 0.83755 0.97823 0.92394 1.45767 1.12368 1.59269 1.13762 1.19647 0.88335 0.79998 0.83150 1.90736 1.30583 1.51537 1.69867 1.20114 0.89590 0.78373 0.81429 1.90737 1.30934 1.46476 1.68546 1.42225 1.09206 1.57026 1.17691 1.18216 0.88122 0.99487 0.87187 1.21786 0.90181 1.15341 1.05342 1.24218 1.01669 0.96081 0.90576 1.77302 0.85782 1.25263 1.23587 1.49111 1.07107 1.47400 1.12262 1.23518 0.87134 0.96277 0.92284 1.23300 1.02997 0.99196 0.91982 1.22740 1.02197 0.94832 0.96505 1.23344 1.02578 0.93663 0.98276 1.23031 0.99133 0.96035 1.03587 1.22400 0.92114 1.01531 1.02356 0.93085 0.93742 0.92136 0.74558 0.73071 0.82131 0.76712 0.84876 0.89691 0.89769 0.87778 0.89583 0.89547 0.90158 0.89990 0.89037 0.90536 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.15 12.65 21.45 0.27 -48.88 16 2 C 0.03 1.54 5.43 84.66 0.46 2.00 16 3 Si 0.94 41.97 29.54 68.60 2.03 44.00 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.51 -25.48 8.59 25.60 0.22 -25.26 16 8 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 9 C 0.00 -0.14 1.47 -52.93 -0.08 -0.22 16 10 C 0.17 7.26 5.53 86.38 0.48 7.74 16 11 N -0.66 -24.27 5.46 -464.55 -2.54 -26.81 16 12 C 0.51 17.21 7.88 87.23 0.69 17.90 16 13 O -0.55 -19.83 16.47 -3.30 -0.05 -19.89 16 14 C 0.52 15.77 7.84 87.23 0.68 16.45 16 15 O -0.50 -16.55 13.62 -3.37 -0.05 -16.59 16 16 N -0.61 -15.18 5.40 -309.57 -1.67 -16.85 16 17 C 0.29 7.46 7.68 131.25 1.01 8.47 16 18 C -0.30 -7.91 9.65 22.15 0.21 -7.69 16 19 C 0.06 1.34 12.00 85.19 1.02 2.36 16 20 N -0.30 -7.07 12.02 -57.13 -0.69 -7.75 16 21 N -0.37 -8.31 3.71 -321.63 -1.19 -9.50 16 22 C 0.11 1.72 4.63 45.52 0.21 1.93 16 23 C -0.14 -1.83 7.78 31.18 0.24 -1.59 16 24 C -0.12 -1.17 8.09 31.18 0.25 -0.92 16 25 C -0.14 -1.83 7.88 31.12 0.25 -1.59 16 26 C -0.18 -6.92 9.96 30.62 0.30 -6.61 16 27 C -0.15 -6.30 9.14 30.62 0.28 -6.02 16 28 H 0.26 13.69 8.32 -92.71 -0.77 12.92 16 29 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 31 H 0.42 15.08 7.83 -92.71 -0.73 14.36 16 32 H 0.43 8.77 7.22 -92.71 -0.67 8.10 16 33 H 0.16 4.73 5.83 -2.91 -0.02 4.71 16 34 H 0.22 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.13 1.63 7.15 -2.39 -0.02 1.61 16 36 H 0.08 1.43 7.74 -2.38 -0.02 1.41 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -61.62 383.19 1.98 -59.64 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: -0.36 Total: 35.70 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.23 Total: 6.93 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -5.82 Total: -109.79 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.10 Total: -36.48 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -61.62 1.98 -59.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262711009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.552 kcal (2) G-P(sol) polarization free energy of solvation -61.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds