Wall clock time and date at job start Tue Mar 31 2020 16:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 119.99896 * 2 1 4 4 H 1.48497 * 109.46819 * 269.99318 * 3 2 1 5 5 H 1.48496 * 109.46774 * 29.99886 * 3 2 1 6 6 H 1.48497 * 109.46915 * 149.99590 * 3 2 1 7 7 C 1.38816 * 120.00593 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00681 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99278 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99432 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46919 * 180.02562 * 10 9 7 12 12 C 1.38233 * 120.41213 * 94.99853 * 11 10 9 13 13 C 1.39376 * 118.34794 * 179.97438 * 12 11 10 14 14 O 1.35512 * 120.50931 * 179.97438 * 13 12 11 15 15 N 1.32816 * 118.97760 * 0.02562 * 13 12 11 16 16 C 1.31764 * 120.72224 * 359.97438 * 15 13 12 17 17 C 1.50703 * 119.09814 * 180.02562 * 16 15 13 18 18 N 1.46499 * 109.47138 * 89.99965 * 17 16 15 19 19 C 1.34777 * 119.99665 * 180.28062 * 18 17 16 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 17 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 17 22 22 H 1.09002 * 109.63911 * 300.41184 * 21 19 18 23 23 C 1.53019 * 109.64711 * 61.05200 * 21 19 18 24 24 C 1.50071 * 110.14870 * 169.11841 * 23 21 19 25 25 C 1.29444 * 124.07609 * 342.87307 * 24 23 21 26 26 C 1.50065 * 124.07553 * 0.46442 * 25 24 23 27 27 C 1.53026 * 110.14632 * 342.87125 * 26 25 24 28 28 N 1.31786 * 121.81141 * 0.28009 * 16 15 13 29 29 H 0.96998 * 120.00547 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00517 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47647 * 59.99853 * 10 9 7 32 32 H 1.09007 * 109.47789 * 299.99921 * 10 9 7 33 33 H 1.07995 * 120.82321 * 359.97438 * 12 11 10 34 34 H 0.96710 * 114.00062 * 270.02170 * 14 13 12 35 35 H 1.09009 * 109.46601 * 329.99867 * 17 16 15 36 36 H 1.08998 * 109.47035 * 210.00375 * 17 16 15 37 37 H 0.97001 * 119.99790 * 359.97438 * 18 17 16 38 38 H 1.08998 * 109.35546 * 289.33082 * 23 21 19 39 39 H 1.09000 * 109.35860 * 48.91205 * 23 21 19 40 40 H 1.08000 * 117.96006 * 162.88997 * 24 23 21 41 41 H 1.07998 * 117.95828 * 180.44616 * 25 24 23 42 42 H 1.08994 * 109.36071 * 222.66738 * 26 25 24 43 43 H 1.08999 * 109.24700 * 103.00680 * 26 25 24 44 44 H 1.08997 * 109.64403 * 289.75080 * 27 26 25 45 45 H 1.08998 * 109.64278 * 169.11898 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0788 -4.8022 0.0008 12 6 0.7045 -5.4019 -1.1871 13 6 -0.2036 -6.4581 -1.1379 14 8 -0.6011 -7.0772 -2.2759 15 7 -0.6740 -6.8477 0.0415 16 6 -0.2907 -6.2483 1.1505 17 6 -0.8473 -6.7207 2.4689 18 7 0.0184 -7.7674 3.0176 19 6 -0.2876 -8.3460 4.1957 20 8 -1.2769 -7.9966 4.8041 21 6 0.5996 -9.4271 4.7571 22 1 0.6505 -10.2601 4.0559 23 6 2.0026 -8.8668 4.9999 24 6 2.8179 -9.8421 5.7975 25 6 2.3153 -10.8226 6.4769 26 6 0.8479 -11.1270 6.5539 27 6 0.0334 -9.9148 6.0968 28 7 0.5623 -5.2438 1.1381 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.6842 -3.7141 0.8921 32 1 2.6855 -3.7149 -0.8878 33 1 1.1056 -5.0604 -2.1298 34 1 -1.3854 -6.6851 -2.6837 35 1 -1.8500 -7.1207 2.3175 36 1 -0.8915 -5.8835 3.1655 37 1 0.8094 -8.0471 2.5308 38 1 2.4903 -8.6863 4.0420 39 1 1.9267 -7.9270 5.5470 40 1 3.8907 -9.7181 5.8053 41 1 2.9944 -11.4615 7.0219 42 1 0.5834 -11.3730 7.5822 43 1 0.6230 -11.9771 5.9098 44 1 0.1115 -9.1201 6.8386 45 1 -1.0106 -10.2013 5.9707 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264024274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:06 Heat of formation + Delta-G solvation = -34.155679 kcal Electronic energy + Delta-G solvation = -27316.036633 eV Core-core repulsion = 23333.131938 eV Total energy + Delta-G solvation = -3982.904695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46471 -41.21963 -38.89515 -38.59784 -37.16807 -35.97890 -34.65842 -33.23044 -32.64371 -32.04023 -31.63133 -28.70591 -28.21334 -25.25268 -25.01981 -24.17406 -23.57720 -22.84460 -21.42000 -19.96326 -19.44385 -18.89140 -18.81828 -18.45446 -17.54740 -16.95894 -16.78307 -16.59672 -16.35558 -16.04003 -15.78254 -15.46032 -15.31387 -14.96868 -14.64090 -14.48058 -14.30046 -14.19054 -14.12878 -13.83367 -13.56847 -13.22120 -13.14335 -13.11614 -12.96879 -12.76628 -12.13481 -12.01333 -11.97948 -11.82056 -11.72312 -11.53139 -11.34556 -11.01943 -10.94288 -10.56432 -10.43407 -10.28556 -9.87079 -9.09248 -7.97773 -5.29166 -0.42154 -0.22895 1.42140 1.49329 1.51136 1.54020 1.59557 1.92221 2.08859 2.51472 2.62927 2.73305 3.11261 3.37559 3.51342 3.69076 3.77067 3.85269 3.88017 4.08668 4.11083 4.16932 4.24951 4.27703 4.40379 4.44195 4.47456 4.56353 4.62954 4.71159 4.79028 4.88530 4.91229 5.03327 5.06959 5.09556 5.14743 5.28591 5.34818 5.48438 5.77504 5.80402 6.06655 6.21084 6.36033 6.44679 6.87651 7.09503 7.28734 7.95756 8.20744 9.25637 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.002467 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.483981 B =11348.592184 C =12642.811881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.074 4.074 3 Si 0.978 3.022 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.086 0.914 9 N -0.735 5.735 10 C 0.198 3.802 11 C 0.184 3.816 12 C -0.211 4.211 13 C 0.364 3.636 14 O -0.474 6.474 15 N -0.536 5.536 16 C 0.318 3.682 17 C 0.200 3.800 18 N -0.710 5.710 19 C 0.521 3.479 20 O -0.575 6.575 21 C -0.098 4.098 22 H 0.120 0.880 23 C -0.082 4.082 24 C -0.164 4.164 25 C -0.156 4.156 26 C -0.090 4.090 27 C -0.100 4.100 28 N -0.515 5.515 29 H 0.252 0.748 30 H 0.372 0.628 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.175 0.825 34 H 0.430 0.570 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.411 0.589 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 -24.669 4.703 25.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.266 4.266 3 Si 0.806 3.194 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.192 1.192 7 C -0.376 4.376 8 H 0.104 0.896 9 N -0.379 5.379 10 C 0.072 3.928 11 C 0.039 3.961 12 C -0.235 4.235 13 C 0.176 3.824 14 O -0.285 6.285 15 N -0.263 5.263 16 C 0.049 3.951 17 C 0.074 3.926 18 N -0.363 5.363 19 C 0.309 3.691 20 O -0.454 6.454 21 C -0.119 4.119 22 H 0.138 0.862 23 C -0.119 4.119 24 C -0.182 4.182 25 C -0.174 4.174 26 C -0.126 4.126 27 C -0.138 4.138 28 N -0.232 5.232 29 H 0.060 0.940 30 H 0.203 0.797 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.192 0.808 34 H 0.294 0.706 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.246 0.754 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.107 -24.969 5.988 25.864 hybrid contribution 0.007 1.730 -1.260 2.140 sum 3.114 -23.239 4.728 23.918 Atomic orbital electron populations 1.69826 1.06836 1.26236 1.59190 1.25624 0.96365 1.01315 1.03314 0.85083 0.77681 0.79064 0.77559 1.21023 1.22602 1.19164 1.19648 0.91807 0.84485 1.41619 0.89620 1.42329 1.05404 1.00321 1.89804 1.19774 0.91140 0.81162 1.00754 1.21911 0.92779 0.93704 0.87664 1.23079 1.01898 0.96673 1.01855 1.19425 0.90327 0.86643 0.86004 1.84658 1.52016 1.58319 1.33482 1.67757 1.27940 1.31451 0.99112 1.22831 0.90425 0.88342 0.93499 1.19750 0.94086 0.91667 0.87091 1.45783 1.29078 1.38818 1.22633 1.21178 0.85592 0.82687 0.79601 1.90701 1.29790 1.64797 1.60155 1.21420 0.94648 0.96391 0.99416 0.86198 1.20414 0.92193 0.98151 1.01123 1.22044 1.00119 0.96795 0.99198 1.22276 0.97118 0.98673 0.99357 1.20516 0.91930 0.97457 1.02743 1.21419 0.99547 0.98245 0.94596 1.68120 1.10537 1.13053 1.31493 0.93971 0.79691 0.93840 0.91591 0.80754 0.70616 0.88492 0.89625 0.75366 0.89376 0.91488 0.86521 0.86362 0.89654 0.89448 0.92633 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 3 Si 0.98 45.05 29.55 68.60 2.03 47.07 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.24 -13.13 9.99 84.03 0.84 -12.29 16 8 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.74 -36.23 5.59 -347.17 -1.94 -38.18 16 10 C 0.20 7.48 6.61 85.64 0.57 8.05 16 11 C 0.18 6.11 6.19 42.46 0.26 6.38 16 12 C -0.21 -5.78 9.79 22.54 0.22 -5.56 16 13 C 0.36 9.36 7.83 84.82 0.66 10.03 16 14 O -0.47 -9.30 13.58 -88.15 -1.20 -10.49 16 15 N -0.54 -15.09 10.36 -300.70 -3.12 -18.20 16 16 C 0.32 9.41 7.01 138.76 0.97 10.39 16 17 C 0.20 5.36 6.10 85.63 0.52 5.88 16 18 N -0.71 -15.86 5.46 -466.78 -2.55 -18.41 16 19 C 0.52 12.31 7.13 87.66 0.62 12.93 16 20 O -0.58 -18.21 15.91 -3.04 -0.05 -18.26 16 21 C -0.10 -1.63 2.58 -11.40 -0.03 -1.66 16 22 H 0.12 1.53 8.13 -2.39 -0.02 1.51 16 23 C -0.08 -1.24 5.29 29.66 0.16 -1.08 16 24 C -0.16 -2.17 9.80 27.04 0.27 -1.90 16 25 C -0.16 -1.88 9.80 27.04 0.27 -1.62 16 26 C -0.09 -1.06 6.12 29.66 0.18 -0.88 16 27 C -0.10 -1.71 4.69 30.74 0.14 -1.56 16 28 N -0.52 -17.48 10.27 -176.21 -1.81 -19.29 16 29 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.37 20.09 7.66 -92.71 -0.71 19.38 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 2.22 8.06 -2.38 -0.02 2.20 16 33 H 0.17 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.43 4.25 9.06 -74.05 -0.67 3.58 16 35 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 36 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.41 7.63 8.21 -92.71 -0.76 6.87 16 38 H 0.09 1.12 7.95 -2.39 -0.02 1.11 16 39 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 40 H 0.12 1.31 8.06 -2.91 -0.02 1.28 16 41 H 0.12 1.09 8.06 -2.91 -0.02 1.06 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 45 H 0.07 1.26 7.91 -2.39 -0.02 1.24 16 Total: -1.00 -72.54 383.76 -3.33 -75.87 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -1.10 Total: 35.06 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 6.12 Total: 23.42 kcal Atomic # 7 Polarization: -143.53 SS G_CDS: -9.13 Total: -152.67 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -1.24 Total: -28.75 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.54 -3.33 -75.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264024274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.715 kcal (2) G-P(sol) polarization free energy of solvation -72.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds