Wall clock time and date at job start Tue Mar 31 2020 17:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38173 * 120.49904 * 2 1 4 4 N 1.31793 * 120.89863 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.04691 * 359.97334 * 4 3 2 6 6 C 1.38121 * 120.89642 * 359.74677 * 5 4 3 7 7 C 1.39794 * 120.50399 * 179.97438 * 2 1 3 8 8 C 1.48152 * 120.92008 * 359.97438 * 7 2 1 9 9 O 1.21518 * 120.00079 * 354.20029 * 8 7 2 10 10 N 1.34777 * 120.00092 * 174.19643 * 8 7 2 11 11 C 1.46501 * 120.00264 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.90393 * 23.74537 * 11 10 8 13 13 C 1.53775 * 113.61616 * 155.00334 * 11 10 8 14 14 C 1.53779 * 87.08237 * 89.11254 * 13 11 10 15 15 H 1.09001 * 113.61679 * 270.79784 * 14 13 11 16 16 N 1.46900 * 113.61174 * 139.97919 * 14 13 11 17 17 C 1.46905 * 110.99745 * 154.99998 * 16 14 13 18 18 C 1.50706 * 109.46879 * 180.02562 * 17 16 14 19 19 O 1.21290 * 120.00122 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99602 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99733 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00096 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00004 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99974 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00211 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47152 * 180.02562 * 25 23 21 27 27 H 1.48501 * 109.47134 * 300.00324 * 25 23 21 28 28 H 1.48500 * 109.46763 * 60.00075 * 25 23 21 29 29 C 1.53776 * 87.08115 * 25.43316 * 14 13 11 30 30 H 1.08996 * 109.47208 * 263.68811 * 1 2 3 31 31 H 1.09001 * 109.47442 * 23.69263 * 1 2 3 32 32 H 1.09003 * 109.47256 * 143.68935 * 1 2 3 33 33 H 1.08008 * 119.55185 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.55010 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.49986 * 180.28713 * 6 5 4 36 36 H 0.97002 * 119.99678 * 0.02562 * 10 8 7 37 37 H 1.09006 * 113.61186 * 334.56282 * 13 11 10 38 38 H 1.09001 * 113.61508 * 203.66652 * 13 11 10 39 39 H 1.00897 * 110.99986 * 31.05148 * 16 14 13 40 40 H 1.08993 * 109.47138 * 60.00270 * 17 16 14 41 41 H 1.08999 * 109.47049 * 299.99666 * 17 16 14 42 42 H 0.97000 * 119.99891 * 359.97438 * 20 18 17 43 43 H 0.97000 * 119.99956 * 359.97438 * 24 23 21 44 44 H 1.08999 * 113.61464 * 89.11322 * 29 14 13 45 45 H 1.08997 * 113.61464 * 220.01727 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5261 1.1997 -0.0005 5 6 4.2334 0.0872 -0.0005 6 6 3.6138 -1.1472 0.0053 7 6 2.2166 -1.2045 0.0005 8 6 1.5079 -2.5055 0.0017 9 8 0.2979 -2.5382 0.1085 10 7 2.2053 -3.6528 -0.1158 11 6 1.5045 -4.9394 -0.1153 12 1 0.4628 -4.8551 -0.4246 13 6 2.2727 -6.0596 -0.8362 14 6 2.9417 -6.3629 0.5148 15 1 3.8568 -5.7959 0.6859 16 7 3.1013 -7.7983 0.7832 17 6 4.2099 -8.0392 1.7166 18 6 4.3431 -9.5193 1.9669 19 8 3.5892 -10.2970 1.4211 20 7 5.3002 -9.9788 2.7972 21 6 5.4211 -11.3253 3.0253 22 1 4.7492 -12.0177 2.5400 23 6 6.4080 -11.7990 3.8809 24 7 7.2253 -10.9565 4.4719 25 14 6.5724 -13.6336 4.1924 26 1 7.6928 -13.8771 5.1361 27 1 5.3102 -14.1511 4.7791 28 1 6.8444 -14.3309 2.9098 29 6 1.6995 -5.7464 1.1792 30 1 -0.3633 -0.1130 1.0214 31 1 -0.3634 0.9410 -0.4129 32 1 -0.3634 -0.8281 -0.6086 33 1 1.6690 2.1264 -0.0004 34 1 5.3121 0.1418 -0.0005 35 1 4.1995 -2.0545 0.0099 36 1 3.1712 -3.6267 -0.2008 37 1 2.9657 -5.6955 -1.5948 38 1 1.6332 -6.8650 -1.1974 39 1 3.2318 -8.3141 -0.0740 40 1 4.0099 -7.5277 2.6580 41 1 5.1363 -7.6590 1.2861 42 1 5.9034 -9.3569 3.2334 43 1 7.1397 -10.0039 4.3105 44 1 0.9033 -6.4662 1.3690 45 1 1.9297 -5.1295 2.0478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265476613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:29 Heat of formation + Delta-G solvation = -8.522499 kcal Electronic energy + Delta-G solvation = -26929.805172 eV Core-core repulsion = 22948.012015 eV Total energy + Delta-G solvation = -3981.793157 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29447 -40.08957 -38.76189 -38.13179 -34.96123 -34.25737 -33.84676 -33.19902 -31.85575 -31.06378 -27.91731 -26.92136 -25.92760 -25.31350 -24.21124 -23.21416 -22.46684 -21.47891 -19.82365 -19.48377 -18.55203 -17.93663 -17.16551 -16.71445 -16.20659 -15.85182 -15.74525 -15.60572 -15.32743 -15.17911 -14.69566 -14.39519 -14.26576 -14.01605 -13.87102 -13.72382 -13.53893 -13.10134 -12.89885 -12.70001 -12.60206 -12.19118 -12.07344 -12.03180 -11.55097 -11.24059 -10.96982 -10.75769 -10.71081 -10.59473 -10.34385 -10.22282 -9.89151 -9.79319 -9.57478 -9.51004 -9.34755 -8.55007 -8.20730 -8.06045 -6.78061 -3.91355 0.21828 0.56089 2.43656 2.57226 3.29132 3.32646 3.33409 3.53689 3.80943 3.90506 4.03488 4.06751 4.19060 4.27608 4.31167 4.32142 4.34971 4.46675 4.69797 4.80933 4.86892 5.01908 5.11187 5.18142 5.21638 5.27642 5.30788 5.36948 5.47363 5.55395 5.59787 5.63094 5.69870 5.74506 5.87947 5.92077 5.96589 5.99644 6.12303 6.27505 6.99709 7.11270 7.40142 7.52078 7.70965 7.77911 8.05291 8.57038 8.76794 9.44549 9.84368 10.65302 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.001812 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.776435 B =15448.858253 C =16296.150143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.076 4.076 3 C 0.094 3.906 4 N -0.465 5.465 5 C 0.087 3.913 6 C -0.137 4.137 7 C -0.095 4.095 8 C 0.561 3.439 9 O -0.520 6.520 10 N -0.704 5.704 11 C 0.118 3.882 12 H 0.109 0.891 13 C -0.147 4.147 14 C 0.058 3.942 15 H 0.068 0.932 16 N -0.654 5.654 17 C 0.050 3.950 18 C 0.442 3.558 19 O -0.577 6.577 20 N -0.575 5.575 21 C -0.382 4.382 22 H 0.099 0.901 23 C -0.010 4.010 24 N -0.901 5.901 25 Si 1.092 2.908 26 H -0.279 1.279 27 H -0.283 1.283 28 H -0.284 1.284 29 C -0.135 4.135 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.400 0.600 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.352 0.648 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.375 0.625 43 H 0.261 0.739 44 H 0.103 0.897 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 24.043 -10.518 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.079 4.079 3 C -0.064 4.064 4 N -0.174 5.174 5 C -0.069 4.069 6 C -0.157 4.157 7 C -0.106 4.106 8 C 0.348 3.652 9 O -0.397 6.397 10 N -0.355 5.355 11 C 0.013 3.987 12 H 0.127 0.873 13 C -0.186 4.186 14 C -0.052 4.052 15 H 0.086 0.914 16 N -0.287 5.287 17 C -0.083 4.083 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.214 5.214 21 C -0.512 4.512 22 H 0.117 0.883 23 C -0.212 4.212 24 N -0.540 5.540 25 Si 0.917 3.083 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.174 4.174 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.180 0.820 34 H 0.180 0.820 35 H 0.157 0.843 36 H 0.235 0.765 37 H 0.090 0.910 38 H 0.125 0.875 39 H 0.172 0.828 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.208 0.792 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.827 23.057 -9.486 26.132 hybrid contribution 0.545 0.944 -1.064 1.523 sum -7.281 24.001 -10.550 27.210 Atomic orbital electron populations 1.21004 0.88882 1.03563 1.04026 1.21153 0.98540 0.92408 0.95755 1.22793 0.89750 0.97475 0.96407 1.67563 1.08341 1.31839 1.09635 1.22750 1.00708 0.87163 0.96291 1.22353 0.93819 1.00314 0.99212 1.20230 0.93781 0.93817 1.02789 1.18143 0.87003 0.83462 0.76638 1.90754 1.13382 1.86962 1.48583 1.45617 1.10622 1.05310 1.73976 1.21820 0.97596 0.81156 0.98155 0.87333 1.23619 0.99976 0.98319 0.96667 1.23120 0.96891 0.89742 0.95496 0.91378 1.60210 1.44649 1.05864 1.17975 1.21736 0.92386 0.96324 0.97845 1.19739 0.84019 0.89177 0.84277 1.90529 1.44960 1.57635 1.52892 1.41943 1.29804 1.08388 1.41216 1.20536 1.18827 0.82699 1.29112 0.88310 1.26526 0.92548 1.08473 0.93669 1.70908 1.37333 1.03591 1.42147 0.83128 0.76639 0.71747 0.76742 1.20401 1.20968 1.21011 1.23556 0.99139 0.98294 0.96458 0.90185 0.91719 0.88583 0.82007 0.82005 0.84340 0.76460 0.90968 0.87520 0.82786 0.89715 0.93994 0.79170 0.92799 0.87870 0.91469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 8.84 36.00 0.32 -0.57 16 2 C -0.08 -0.62 5.93 -104.07 -0.62 -1.24 16 3 C 0.09 0.71 10.83 -17.59 -0.19 0.52 16 4 N -0.47 -4.02 10.34 -13.30 -0.14 -4.15 16 5 C 0.09 0.60 11.17 -17.59 -0.20 0.40 16 6 C -0.14 -0.88 9.60 -39.03 -0.37 -1.26 16 7 C -0.10 -0.80 5.91 -104.65 -0.62 -1.42 16 8 C 0.56 5.47 7.74 -12.19 -0.09 5.37 16 9 O -0.52 -6.49 13.13 5.35 0.07 -6.42 16 10 N -0.70 -5.59 5.22 -53.86 -0.28 -5.87 16 11 C 0.12 1.07 4.32 -67.12 -0.29 0.78 16 12 H 0.11 1.09 7.47 -51.93 -0.39 0.71 16 13 C -0.15 -1.27 7.40 -25.92 -0.19 -1.46 16 14 C 0.06 0.62 4.02 -66.90 -0.27 0.35 16 15 H 0.07 0.65 7.87 -51.93 -0.41 0.25 16 16 N -0.65 -9.83 6.18 -107.13 -0.66 -10.49 16 17 C 0.05 0.84 6.01 -4.97 -0.03 0.81 16 18 C 0.44 10.30 7.82 -10.98 -0.09 10.21 16 19 O -0.58 -15.61 15.78 5.55 0.09 -15.52 16 20 N -0.58 -14.36 5.28 -10.96 -0.06 -14.41 16 21 C -0.38 -10.72 9.68 -14.94 -0.14 -10.86 16 22 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 23 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 24 N -0.90 -25.09 13.68 55.50 0.76 -24.33 16 25 Si 1.09 24.15 29.92 -169.99 -5.09 19.06 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 29 C -0.13 -1.44 7.68 -25.92 -0.20 -1.64 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.34 8.06 -51.93 -0.42 -0.08 16 32 H 0.10 0.89 5.95 -51.93 -0.31 0.58 16 33 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.16 0.69 8.06 -52.48 -0.42 0.26 16 35 H 0.14 0.52 6.58 -52.49 -0.35 0.18 16 36 H 0.40 2.26 6.88 -40.82 -0.28 1.98 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.35 5.43 8.24 -39.29 -0.32 5.11 16 40 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 42 H 0.38 8.61 6.73 -40.82 -0.27 8.34 16 43 H 0.26 6.96 6.77 -40.82 -0.28 6.69 16 44 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -35.07 378.11 -8.69 -43.76 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -6.00 Total: 13.03 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -3.08 Total: -0.36 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.38 Total: -59.26 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.16 Total: -21.93 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -5.09 Total: 19.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.07 -8.69 -43.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265476613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.237 kcal (2) G-P(sol) polarization free energy of solvation -35.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds