Wall clock time and date at job start Tue Mar 31 2020 17:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38173 * 120.49904 * 2 1 4 4 N 1.31793 * 120.89863 * 180.02562 * 3 2 1 5 5 C 1.31831 * 122.04691 * 359.97334 * 4 3 2 6 6 C 1.38121 * 120.89642 * 359.74677 * 5 4 3 7 7 C 1.39794 * 120.50399 * 179.97438 * 2 1 3 8 8 C 1.48152 * 120.92008 * 359.97438 * 7 2 1 9 9 O 1.21518 * 120.00079 * 354.20029 * 8 7 2 10 10 N 1.34777 * 120.00092 * 174.19643 * 8 7 2 11 11 C 1.46501 * 120.00264 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.90393 * 23.74537 * 11 10 8 13 13 C 1.53775 * 113.61616 * 155.00334 * 11 10 8 14 14 C 1.53779 * 87.08237 * 89.11254 * 13 11 10 15 15 H 1.09001 * 113.61679 * 270.79784 * 14 13 11 16 16 N 1.46900 * 113.61174 * 139.97919 * 14 13 11 17 17 C 1.46905 * 110.99745 * 154.99998 * 16 14 13 18 18 C 1.50706 * 109.46879 * 180.02562 * 17 16 14 19 19 O 1.21290 * 120.00122 * 0.02562 * 18 17 16 20 20 N 1.34781 * 119.99602 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99733 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00096 * 359.97438 * 21 20 18 23 23 C 1.38943 * 120.00004 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99974 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00211 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47152 * 180.02562 * 25 23 21 27 27 H 1.48501 * 109.47134 * 300.00324 * 25 23 21 28 28 H 1.48500 * 109.46763 * 60.00075 * 25 23 21 29 29 C 1.53776 * 87.08115 * 25.43316 * 14 13 11 30 30 H 1.08996 * 109.47208 * 263.68811 * 1 2 3 31 31 H 1.09001 * 109.47442 * 23.69263 * 1 2 3 32 32 H 1.09003 * 109.47256 * 143.68935 * 1 2 3 33 33 H 1.08008 * 119.55185 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.55010 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.49986 * 180.28713 * 6 5 4 36 36 H 0.97002 * 119.99678 * 0.02562 * 10 8 7 37 37 H 1.09006 * 113.61186 * 334.56282 * 13 11 10 38 38 H 1.09001 * 113.61508 * 203.66652 * 13 11 10 39 39 H 1.00897 * 110.99986 * 31.05148 * 16 14 13 40 40 H 1.08993 * 109.47138 * 60.00270 * 17 16 14 41 41 H 1.08999 * 109.47049 * 299.99666 * 17 16 14 42 42 H 0.97000 * 119.99891 * 359.97438 * 20 18 17 43 43 H 0.97000 * 119.99956 * 359.97438 * 24 23 21 44 44 H 1.08999 * 113.61464 * 89.11322 * 29 14 13 45 45 H 1.08997 * 113.61464 * 220.01727 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1905 0.0000 4 7 3.5261 1.1997 -0.0005 5 6 4.2334 0.0872 -0.0005 6 6 3.6138 -1.1472 0.0053 7 6 2.2166 -1.2045 0.0005 8 6 1.5079 -2.5055 0.0017 9 8 0.2979 -2.5382 0.1085 10 7 2.2053 -3.6528 -0.1158 11 6 1.5045 -4.9394 -0.1153 12 1 0.4628 -4.8551 -0.4246 13 6 2.2727 -6.0596 -0.8362 14 6 2.9417 -6.3629 0.5148 15 1 3.8568 -5.7959 0.6859 16 7 3.1013 -7.7983 0.7832 17 6 4.2099 -8.0392 1.7166 18 6 4.3431 -9.5193 1.9669 19 8 3.5892 -10.2970 1.4211 20 7 5.3002 -9.9788 2.7972 21 6 5.4211 -11.3253 3.0253 22 1 4.7492 -12.0177 2.5400 23 6 6.4080 -11.7990 3.8809 24 7 7.2253 -10.9565 4.4719 25 14 6.5724 -13.6336 4.1924 26 1 7.6928 -13.8771 5.1361 27 1 5.3102 -14.1511 4.7791 28 1 6.8444 -14.3309 2.9098 29 6 1.6995 -5.7464 1.1792 30 1 -0.3633 -0.1130 1.0214 31 1 -0.3634 0.9410 -0.4129 32 1 -0.3634 -0.8281 -0.6086 33 1 1.6690 2.1264 -0.0004 34 1 5.3121 0.1418 -0.0005 35 1 4.1995 -2.0545 0.0099 36 1 3.1712 -3.6267 -0.2008 37 1 2.9657 -5.6955 -1.5948 38 1 1.6332 -6.8650 -1.1974 39 1 3.2318 -8.3141 -0.0740 40 1 4.0099 -7.5277 2.6580 41 1 5.1363 -7.6590 1.2861 42 1 5.9034 -9.3569 3.2334 43 1 7.1397 -10.0039 4.3105 44 1 0.9033 -6.4662 1.3690 45 1 1.9297 -5.1295 2.0478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265476613.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:28 Heat of formation + Delta-G solvation = -35.318342 kcal Electronic energy + Delta-G solvation = -26930.967127 eV Core-core repulsion = 22948.012015 eV Total energy + Delta-G solvation = -3982.955112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.94179 -40.84892 -40.23124 -39.28843 -36.52156 -35.66220 -34.45039 -34.13352 -33.11715 -32.49366 -28.64250 -28.20973 -26.73677 -26.28178 -25.65924 -24.14403 -23.13604 -22.16824 -21.52654 -20.40958 -19.98056 -19.18048 -18.25220 -17.74010 -17.16433 -16.88718 -16.58489 -16.48644 -16.30118 -16.24130 -15.79124 -15.77010 -15.43433 -15.06135 -14.96248 -14.65576 -14.36619 -14.33685 -13.70251 -13.53529 -13.44628 -13.34074 -13.29066 -13.07441 -12.79226 -12.60247 -12.55475 -11.92072 -11.89694 -11.59472 -11.53943 -11.52309 -11.31989 -10.94897 -10.42585 -10.39181 -10.16986 -10.11516 -9.94336 -9.37710 -8.93021 -6.07117 -0.37848 0.04700 1.52356 1.54734 1.74661 1.82664 1.88743 2.00389 2.40467 2.76939 2.83259 3.16317 3.38220 3.41479 3.46074 3.50136 3.57804 3.74149 3.79429 3.90706 3.93917 4.06822 4.11985 4.34615 4.39600 4.47532 4.49628 4.59053 4.70553 4.74480 4.79588 4.81474 4.82841 4.91936 5.01665 5.07517 5.08954 5.34491 5.48036 5.60043 5.60710 5.94939 6.05388 6.36038 6.36642 6.57788 6.74168 6.87748 7.03161 7.43931 7.92209 8.54752 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022507 B = 0.001812 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.776435 B =15448.858253 C =16296.150143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C 0.089 3.911 4 N -0.487 5.487 5 C 0.082 3.918 6 C -0.128 4.128 7 C -0.111 4.111 8 C 0.559 3.441 9 O -0.555 6.555 10 N -0.691 5.691 11 C 0.127 3.873 12 H 0.096 0.904 13 C -0.133 4.133 14 C 0.059 3.941 15 H 0.092 0.908 16 N -0.672 5.672 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.587 5.587 21 C -0.411 4.411 22 H 0.073 0.927 23 C -0.043 4.043 24 N -0.916 5.916 25 Si 1.133 2.867 26 H -0.273 1.273 27 H -0.274 1.274 28 H -0.272 1.272 29 C -0.138 4.138 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.182 0.818 34 H 0.189 0.811 35 H 0.168 0.832 36 H 0.414 0.586 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.348 0.652 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.385 0.615 43 H 0.259 0.741 44 H 0.085 0.915 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 25.254 -11.061 28.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.068 4.068 4 N -0.196 5.196 5 C -0.074 4.074 6 C -0.148 4.148 7 C -0.122 4.122 8 C 0.346 3.654 9 O -0.434 6.434 10 N -0.343 5.343 11 C 0.021 3.979 12 H 0.115 0.885 13 C -0.171 4.171 14 C -0.051 4.051 15 H 0.110 0.890 16 N -0.305 5.305 17 C -0.067 4.067 18 C 0.228 3.772 19 O -0.504 6.504 20 N -0.226 5.226 21 C -0.540 4.540 22 H 0.091 0.909 23 C -0.241 4.241 24 N -0.556 5.556 25 Si 0.953 3.047 26 H -0.197 1.197 27 H -0.200 1.200 28 H -0.197 1.197 29 C -0.178 4.178 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.199 0.801 34 H 0.206 0.794 35 H 0.185 0.815 36 H 0.252 0.748 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.168 0.832 40 H 0.118 0.882 41 H 0.090 0.910 42 H 0.219 0.781 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.457 24.313 -10.038 27.084 hybrid contribution 0.077 0.639 -0.926 1.128 sum -6.380 24.952 -10.964 27.991 Atomic orbital electron populations 1.20919 0.88883 1.03874 1.03261 1.21293 0.98759 0.92836 0.96293 1.23086 0.89707 0.98034 0.96015 1.67605 1.08804 1.32910 1.10310 1.23250 1.01955 0.86846 0.95377 1.22628 0.92991 1.01472 0.97733 1.20279 0.94808 0.93115 1.04006 1.18407 0.86700 0.84248 0.76001 1.90746 1.14919 1.87468 1.50220 1.45474 1.11248 1.04391 1.73189 1.21620 0.97416 0.81641 0.97222 0.88543 1.23522 0.99781 0.97623 0.96174 1.23265 0.97701 0.87342 0.96792 0.89037 1.60178 1.44035 1.08539 1.17731 1.21599 0.94581 0.91107 0.99393 1.20954 0.82157 0.91887 0.82221 1.90500 1.46149 1.59750 1.54004 1.42003 1.30808 1.07666 1.42135 1.20518 1.19272 0.84068 1.30138 0.90925 1.27813 0.91691 1.11794 0.92797 1.70975 1.37908 1.03873 1.42809 0.82635 0.77108 0.67657 0.77312 1.19732 1.19993 1.19708 1.23528 0.98858 0.98269 0.97155 0.90978 0.89562 0.90580 0.80091 0.79433 0.81450 0.74794 0.88646 0.87975 0.83199 0.88225 0.90962 0.78106 0.92961 0.89632 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.69 8.84 71.23 0.63 -1.06 16 2 C -0.09 -1.39 5.93 -19.50 -0.12 -1.51 16 3 C 0.09 1.24 10.83 84.68 0.92 2.15 16 4 N -0.49 -7.57 10.34 -196.00 -2.03 -9.59 16 5 C 0.08 0.92 11.17 84.67 0.95 1.86 16 6 C -0.13 -1.32 9.60 22.63 0.22 -1.10 16 7 C -0.11 -1.73 5.91 -19.88 -0.12 -1.84 16 8 C 0.56 10.36 7.74 86.88 0.67 11.03 16 9 O -0.55 -13.98 13.13 -3.77 -0.05 -14.03 16 10 N -0.69 -9.51 5.22 -442.62 -2.31 -11.82 16 11 C 0.13 2.12 4.32 45.52 0.20 2.31 16 12 H 0.10 1.91 7.47 -2.39 -0.02 1.89 16 13 C -0.13 -1.96 7.40 31.12 0.23 -1.73 16 14 C 0.06 1.10 4.02 45.44 0.18 1.29 16 15 H 0.09 1.36 7.87 -2.39 -0.02 1.34 16 16 N -0.67 -19.05 6.18 -492.85 -3.05 -22.10 16 17 C 0.07 2.07 6.01 85.56 0.51 2.59 16 18 C 0.44 20.36 7.82 87.66 0.69 21.05 16 19 O -0.62 -33.91 15.78 -3.06 -0.05 -33.95 16 20 N -0.59 -29.33 5.28 -306.98 -1.62 -30.96 16 21 C -0.41 -23.32 9.68 84.04 0.81 -22.50 16 22 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 23 C -0.04 -2.30 5.50 84.92 0.47 -1.84 16 24 N -0.92 -50.64 13.68 21.66 0.30 -50.34 16 25 Si 1.13 48.17 29.92 68.60 2.05 50.22 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 29 C -0.14 -2.79 7.68 31.12 0.24 -2.56 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 0.84 8.06 -2.39 -0.02 0.82 16 32 H 0.08 1.47 5.95 -2.39 -0.01 1.46 16 33 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.17 0.60 6.58 -2.91 -0.02 0.58 16 36 H 0.41 3.25 6.88 -92.71 -0.64 2.61 16 37 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.35 10.30 8.24 -89.70 -0.74 9.56 16 40 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 42 H 0.38 17.53 6.73 -92.71 -0.62 16.90 16 43 H 0.26 13.80 6.77 -92.71 -0.63 13.17 16 44 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -77.47 378.11 -1.08 -78.55 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.80 Total: 35.87 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 6.48 Total: 8.15 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -8.71 Total: -124.81 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -0.10 Total: -47.98 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.05 Total: 50.22 kcal Total: -77.47 -1.08 -78.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265476613.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.231 kcal (2) G-P(sol) polarization free energy of solvation -77.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds