Wall clock time and date at job start Tue Mar 31 2020 16:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38607 * 119.54759 * 2 1 4 4 C 1.38584 * 119.35042 * 179.97438 * 3 2 1 5 5 C 1.38632 * 118.48817 * 359.75393 * 4 3 2 6 6 C 1.39268 * 119.06183 * 0.51204 * 5 4 3 7 7 C 1.48166 * 119.72429 * 179.74963 * 6 5 4 8 8 O 1.21512 * 120.00133 * 359.72685 * 7 6 5 9 9 N 1.34779 * 119.99816 * 179.72401 * 7 6 5 10 10 C 1.46508 * 119.99900 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.27026 * 32.90786 * 10 9 7 12 12 C 1.54594 * 110.38985 * 270.76571 * 10 9 7 13 13 C 1.54933 * 102.91997 * 262.99688 * 12 10 9 14 14 N 1.48813 * 103.35205 * 322.69117 * 13 12 10 15 15 C 1.46897 * 111.18681 * 159.50572 * 14 13 12 16 16 C 1.50694 * 109.47194 * 52.66331 * 15 14 13 17 17 O 1.21297 * 120.00284 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00402 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00292 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00201 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99684 * 180.02562 * 19 18 16 22 22 N 1.31401 * 120.00308 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99566 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47342 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46994 * 120.00204 * 23 21 19 26 26 H 1.48501 * 109.47407 * 239.99891 * 23 21 19 27 27 C 1.47905 * 105.67450 * 38.97719 * 14 13 12 28 28 N 1.31497 * 119.54965 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47369 * 269.97974 * 1 2 3 30 30 H 1.09004 * 109.47034 * 29.98104 * 1 2 3 31 31 H 1.08999 * 109.47080 * 149.97263 * 1 2 3 32 32 H 1.08004 * 120.32647 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.75629 * 179.97438 * 4 3 2 34 34 H 1.08000 * 120.47342 * 180.26093 * 5 4 3 35 35 H 0.97001 * 119.99978 * 0.02562 * 9 7 6 36 36 H 1.08999 * 110.72754 * 21.35587 * 12 10 9 37 37 H 1.08999 * 110.72080 * 144.63967 * 12 10 9 38 38 H 1.08998 * 110.66828 * 81.02294 * 13 12 10 39 39 H 1.09004 * 110.66649 * 204.15215 * 13 12 10 40 40 H 1.09000 * 109.47143 * 172.66998 * 15 14 13 41 41 H 1.09011 * 109.46966 * 292.66611 * 15 14 13 42 42 H 0.97004 * 119.99442 * 0.02562 * 18 16 15 43 43 H 0.97010 * 120.00236 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.91668 * 215.45268 * 27 14 13 45 45 H 1.09002 * 109.91761 * 94.35443 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2010 0.0005 5 6 4.2334 -0.0197 0.0063 6 6 3.4822 -1.1923 0.0004 7 6 4.1693 -2.5050 0.0008 8 8 5.3834 -2.5553 0.0013 9 7 3.4477 -3.6434 0.0008 10 6 4.1271 -4.9414 0.0018 11 1 5.0624 -4.8776 0.5579 12 6 4.3950 -5.4102 -1.4468 13 6 3.2065 -6.3635 -1.7278 14 7 3.0051 -7.0548 -0.4254 15 6 1.6559 -7.6283 -0.3319 16 6 1.3911 -8.4889 -1.5402 17 8 2.2423 -8.6120 -2.3956 18 7 0.2083 -9.1219 -1.6707 19 6 -0.0324 -9.9053 -2.7697 20 1 0.7259 -10.0155 -3.5309 21 6 -1.2520 -10.5574 -2.9043 22 7 -2.1747 -10.4229 -1.9785 23 14 -1.5797 -11.6254 -4.4015 24 1 -0.3892 -11.6122 -5.2891 25 1 -1.8561 -13.0178 -3.9654 26 1 -2.7542 -11.0957 -5.1400 27 6 3.2149 -6.0216 0.6120 28 7 2.1555 -1.1439 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6485 2.1400 -0.0004 33 1 4.1319 2.1272 0.0001 34 1 5.3126 -0.0608 0.0111 35 1 2.4785 -3.6032 0.0001 36 1 4.3822 -4.5646 -2.1345 37 1 5.3423 -5.9457 -1.5099 38 1 2.3160 -5.7978 -2.0018 39 1 3.4639 -7.0796 -2.5083 40 1 1.5810 -8.2355 0.5702 41 1 0.9212 -6.8240 -0.2906 42 1 -0.4725 -9.0232 -0.9868 43 1 -3.0263 -10.8779 -2.0727 44 1 3.6955 -6.4639 1.4846 45 1 2.2590 -5.5825 0.8974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266302648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:25 Heat of formation + Delta-G solvation = -22.987147 kcal Electronic energy + Delta-G solvation = -27596.961491 eV Core-core repulsion = 23614.541100 eV Total energy + Delta-G solvation = -3982.420391 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.01546 -39.77907 -38.72446 -37.40255 -34.50322 -33.82206 -33.40082 -32.87988 -31.37986 -30.71305 -28.52054 -28.09947 -26.59491 -24.95935 -24.10131 -22.64600 -21.52362 -20.98673 -20.34672 -19.20234 -18.27596 -17.86999 -17.00636 -16.50981 -16.23657 -15.76706 -15.53398 -15.26376 -15.06087 -14.63644 -14.47940 -14.38110 -14.09228 -13.85387 -13.57816 -13.45670 -13.26618 -12.80535 -12.64711 -12.52158 -12.35215 -12.12906 -11.86840 -11.73378 -11.54474 -11.24550 -11.12089 -10.86174 -10.74837 -10.48456 -10.36075 -10.33901 -10.23668 -9.86014 -9.51899 -9.42657 -9.13240 -8.38739 -8.02568 -7.90712 -6.43145 -3.83819 0.28061 0.78948 2.47330 2.86349 3.15504 3.26380 3.33604 3.50004 3.67815 3.88207 4.08704 4.24086 4.29786 4.43899 4.55582 4.60539 4.65149 4.81710 4.98487 5.08592 5.14069 5.17707 5.18725 5.21338 5.25039 5.47576 5.58202 5.59721 5.63863 5.69611 5.71829 5.76838 5.91000 5.99504 6.06175 6.17194 6.22340 6.28642 6.43830 6.69938 7.17350 7.21862 7.27884 7.49238 7.54450 7.99098 8.04988 8.60210 9.16819 9.52416 10.04074 10.74602 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.002312 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.319766 B =12107.600937 C =13263.596968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.128 3.872 3 C -0.151 4.151 4 C -0.078 4.078 5 C -0.119 4.119 6 C 0.085 3.915 7 C 0.572 3.428 8 O -0.533 6.533 9 N -0.701 5.701 10 C 0.131 3.869 11 H 0.100 0.900 12 C -0.134 4.134 13 C 0.039 3.961 14 N -0.493 5.493 15 C 0.036 3.964 16 C 0.442 3.558 17 O -0.580 6.580 18 N -0.562 5.562 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.028 3.972 28 N -0.460 5.460 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.410 0.590 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.090 0.910 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 23.842 7.845 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.012 4.012 3 C -0.171 4.171 4 C -0.104 4.104 5 C -0.140 4.140 6 C -0.053 4.053 7 C 0.356 3.644 8 O -0.409 6.409 9 N -0.352 5.352 10 C 0.026 3.974 11 H 0.118 0.882 12 C -0.173 4.173 13 C -0.088 4.088 14 N -0.218 5.218 15 C -0.095 4.095 16 C 0.228 3.772 17 O -0.464 6.464 18 N -0.198 5.198 19 C -0.427 4.427 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.101 4.101 28 N -0.172 5.172 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.246 0.754 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.137 0.863 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.972 22.343 7.344 24.531 hybrid contribution -1.435 1.052 -0.257 1.798 sum 5.537 23.395 7.087 25.065 Atomic orbital electron populations 1.20767 0.88115 1.04009 1.03473 1.21357 0.97288 0.87865 0.94721 1.22216 0.95062 0.99498 1.00369 1.21638 0.94432 0.98346 0.96002 1.22124 1.02359 0.91784 0.97741 1.21163 0.89667 0.94211 1.00282 1.17867 0.86520 0.83278 0.76722 1.90788 1.12915 1.87032 1.50163 1.46067 1.10979 1.05066 1.73075 1.21936 0.96484 0.81046 0.97892 0.88181 1.22981 1.00226 0.99137 0.94920 1.23545 0.95755 0.95899 0.93642 1.64727 1.25869 1.28348 1.02831 1.22112 0.89479 0.98417 0.99511 1.19696 0.83810 0.85257 0.88467 1.90447 1.45481 1.66400 1.44121 1.41857 1.13561 1.42325 1.22082 1.19752 1.00422 1.22819 0.99756 0.87820 1.25267 0.95447 0.98441 0.98816 1.69618 1.06510 1.43998 1.34134 0.85803 0.78471 0.79215 0.80878 1.19200 1.20727 1.20777 1.23227 0.98576 0.91687 0.96586 1.67394 1.08558 1.30267 1.11019 0.90065 0.90429 0.89974 0.84204 0.83955 0.83372 0.75397 0.91095 0.89796 0.94650 0.86271 0.89094 0.93345 0.77456 0.91908 0.89223 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.17 36.01 0.37 -0.26 16 2 C 0.13 1.08 6.78 -82.60 -0.56 0.52 16 3 C -0.15 -0.98 9.75 -39.32 -0.38 -1.37 16 4 C -0.08 -0.53 10.17 -39.31 -0.40 -0.93 16 5 C -0.12 -1.11 9.63 -39.05 -0.38 -1.48 16 6 C 0.09 0.97 6.75 -83.01 -0.56 0.41 16 7 C 0.57 7.49 7.81 -12.18 -0.10 7.40 16 8 O -0.53 -8.23 15.97 5.36 0.09 -8.14 16 9 N -0.70 -8.55 5.05 -53.33 -0.27 -8.82 16 10 C 0.13 1.69 3.34 -66.57 -0.22 1.47 16 11 H 0.10 1.31 7.56 -51.93 -0.39 0.91 16 12 C -0.13 -1.91 6.79 -24.87 -0.17 -2.08 16 13 C 0.04 0.66 5.31 -1.74 -0.01 0.65 16 14 N -0.49 -8.29 5.27 -231.64 -1.22 -9.51 16 15 C 0.04 0.65 5.52 -4.98 -0.03 0.62 16 16 C 0.44 10.34 7.50 -10.99 -0.08 10.26 16 17 O -0.58 -15.30 13.11 5.54 0.07 -15.23 16 18 N -0.56 -14.15 5.29 -10.96 -0.06 -14.20 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 23 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 C 0.03 0.36 6.46 -2.75 -0.02 0.35 16 28 N -0.46 -4.95 9.45 -6.06 -0.06 -5.01 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.14 0.49 8.06 -52.48 -0.42 0.07 16 33 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.15 1.30 7.64 -52.49 -0.40 0.90 16 35 H 0.41 4.71 7.66 -40.82 -0.31 4.39 16 36 H 0.07 1.01 8.05 -51.93 -0.42 0.59 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.04 0.62 8.02 -51.93 -0.42 0.20 16 39 H 0.12 2.45 6.00 -51.93 -0.31 2.13 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.05 0.79 7.81 -51.92 -0.41 0.38 16 42 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.60 7.05 -51.93 -0.37 0.23 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -32.87 377.29 -9.07 -41.94 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -6.24 Total: 13.36 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -2.78 Total: 7.65 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: -0.88 Total: -61.23 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.16 Total: -23.37 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.87 -9.07 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.953 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds