Wall clock time and date at job start Tue Mar 31 2020 16:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38607 * 119.54759 * 2 1 4 4 C 1.38584 * 119.35042 * 179.97438 * 3 2 1 5 5 C 1.38632 * 118.48817 * 359.75393 * 4 3 2 6 6 C 1.39268 * 119.06183 * 0.51204 * 5 4 3 7 7 C 1.48166 * 119.72429 * 179.74963 * 6 5 4 8 8 O 1.21512 * 120.00133 * 359.72685 * 7 6 5 9 9 N 1.34779 * 119.99816 * 179.72401 * 7 6 5 10 10 C 1.46508 * 119.99900 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.27026 * 32.90786 * 10 9 7 12 12 C 1.54594 * 110.38985 * 270.76571 * 10 9 7 13 13 C 1.54933 * 102.91997 * 262.99688 * 12 10 9 14 14 N 1.48813 * 103.35205 * 322.69117 * 13 12 10 15 15 C 1.46897 * 111.18681 * 159.50572 * 14 13 12 16 16 C 1.50694 * 109.47194 * 52.66331 * 15 14 13 17 17 O 1.21297 * 120.00284 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00402 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00292 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00201 * 0.02562 * 19 18 16 21 21 C 1.38952 * 119.99684 * 180.02562 * 19 18 16 22 22 N 1.31401 * 120.00308 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99566 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47342 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46994 * 120.00204 * 23 21 19 26 26 H 1.48501 * 109.47407 * 239.99891 * 23 21 19 27 27 C 1.47905 * 105.67450 * 38.97719 * 14 13 12 28 28 N 1.31497 * 119.54965 * 180.02562 * 2 1 3 29 29 H 1.08991 * 109.47369 * 269.97974 * 1 2 3 30 30 H 1.09004 * 109.47034 * 29.98104 * 1 2 3 31 31 H 1.08999 * 109.47080 * 149.97263 * 1 2 3 32 32 H 1.08004 * 120.32647 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.75629 * 179.97438 * 4 3 2 34 34 H 1.08000 * 120.47342 * 180.26093 * 5 4 3 35 35 H 0.97001 * 119.99978 * 0.02562 * 9 7 6 36 36 H 1.08999 * 110.72754 * 21.35587 * 12 10 9 37 37 H 1.08999 * 110.72080 * 144.63967 * 12 10 9 38 38 H 1.08998 * 110.66828 * 81.02294 * 13 12 10 39 39 H 1.09004 * 110.66649 * 204.15215 * 13 12 10 40 40 H 1.09000 * 109.47143 * 172.66998 * 15 14 13 41 41 H 1.09011 * 109.46966 * 292.66611 * 15 14 13 42 42 H 0.97004 * 119.99442 * 0.02562 * 18 16 15 43 43 H 0.97010 * 120.00236 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.91668 * 215.45268 * 27 14 13 45 45 H 1.09002 * 109.91761 * 94.35443 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5764 1.2010 0.0005 5 6 4.2334 -0.0197 0.0063 6 6 3.4822 -1.1923 0.0004 7 6 4.1693 -2.5050 0.0008 8 8 5.3834 -2.5553 0.0013 9 7 3.4477 -3.6434 0.0008 10 6 4.1271 -4.9414 0.0018 11 1 5.0624 -4.8776 0.5579 12 6 4.3950 -5.4102 -1.4468 13 6 3.2065 -6.3635 -1.7278 14 7 3.0051 -7.0548 -0.4254 15 6 1.6559 -7.6283 -0.3319 16 6 1.3911 -8.4889 -1.5402 17 8 2.2423 -8.6120 -2.3956 18 7 0.2083 -9.1219 -1.6707 19 6 -0.0324 -9.9053 -2.7697 20 1 0.7259 -10.0155 -3.5309 21 6 -1.2520 -10.5574 -2.9043 22 7 -2.1747 -10.4229 -1.9785 23 14 -1.5797 -11.6254 -4.4015 24 1 -0.3892 -11.6122 -5.2891 25 1 -1.8561 -13.0178 -3.9654 26 1 -2.7542 -11.0957 -5.1400 27 6 3.2149 -6.0216 0.6120 28 7 2.1555 -1.1439 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8897 -0.5143 32 1 1.6485 2.1400 -0.0004 33 1 4.1319 2.1272 0.0001 34 1 5.3126 -0.0608 0.0111 35 1 2.4785 -3.6032 0.0001 36 1 4.3822 -4.5646 -2.1345 37 1 5.3423 -5.9457 -1.5099 38 1 2.3160 -5.7978 -2.0018 39 1 3.4639 -7.0796 -2.5083 40 1 1.5810 -8.2355 0.5702 41 1 0.9212 -6.8240 -0.2906 42 1 -0.4725 -9.0232 -0.9868 43 1 -3.0263 -10.8779 -2.0727 44 1 3.6955 -6.4639 1.4846 45 1 2.2590 -5.5825 0.8974 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266302648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:24 Heat of formation + Delta-G solvation = -48.283563 kcal Electronic energy + Delta-G solvation = -27598.058426 eV Core-core repulsion = 23614.541100 eV Total energy + Delta-G solvation = -3983.517326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80741 -40.91057 -40.10450 -38.87963 -36.07933 -35.36852 -33.99529 -33.63053 -33.30651 -32.02784 -29.67464 -28.73662 -28.12552 -26.18295 -25.47833 -23.26708 -22.70918 -22.03679 -21.49568 -20.97787 -19.85837 -19.13718 -18.05175 -17.56016 -17.19089 -16.99412 -16.60469 -16.49836 -16.28450 -16.20186 -15.79331 -15.67869 -15.12805 -15.07988 -14.75976 -14.58667 -14.20351 -14.02906 -13.65077 -13.44993 -13.29428 -13.18156 -13.11481 -12.94948 -12.89760 -12.83319 -12.49724 -12.40168 -12.30564 -12.11326 -11.96932 -11.48017 -11.44577 -10.95351 -10.58327 -10.34579 -10.15510 -10.01153 -9.94910 -9.36872 -8.47302 -5.95562 -0.40311 0.20765 1.35815 1.41437 1.55396 1.62223 1.93056 2.03361 2.28419 2.78355 2.83672 3.00827 3.19663 3.28896 3.51082 3.68623 3.76167 3.84980 4.00255 4.04584 4.07695 4.25140 4.29357 4.34699 4.43991 4.47547 4.54947 4.58636 4.66462 4.75241 4.80124 4.81134 4.91667 5.02989 5.09627 5.11979 5.20134 5.22864 5.36316 5.41742 5.63567 5.81110 5.90382 6.07854 6.29868 6.60131 6.75760 7.03808 7.12698 7.54949 8.11020 8.70362 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.002312 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.319766 B =12107.600937 C =13263.596968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.111 3.889 3 C -0.139 4.139 4 C -0.073 4.073 5 C -0.128 4.128 6 C 0.055 3.945 7 C 0.570 3.430 8 O -0.564 6.564 9 N -0.695 5.695 10 C 0.139 3.861 11 H 0.102 0.898 12 C -0.124 4.124 13 C 0.044 3.956 14 N -0.508 5.508 15 C 0.048 3.952 16 C 0.438 3.562 17 O -0.614 6.614 18 N -0.572 5.572 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.034 3.966 28 N -0.481 5.481 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.146 0.854 35 H 0.413 0.587 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.080 0.920 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.109 0.891 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.816 26.055 8.899 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.030 4.030 3 C -0.158 4.158 4 C -0.099 4.099 5 C -0.149 4.149 6 C -0.082 4.082 7 C 0.356 3.644 8 O -0.443 6.443 9 N -0.346 5.346 10 C 0.034 3.966 11 H 0.120 0.880 12 C -0.163 4.163 13 C -0.083 4.083 14 N -0.233 5.233 15 C -0.084 4.084 16 C 0.226 3.774 17 O -0.501 6.501 18 N -0.209 5.209 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.094 4.094 28 N -0.195 5.195 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.195 0.805 33 H 0.195 0.805 34 H 0.164 0.836 35 H 0.251 0.749 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.132 0.868 41 H 0.089 0.911 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.953 24.565 8.427 26.643 hybrid contribution -1.123 0.475 -0.575 1.348 sum 4.829 25.039 7.852 26.682 Atomic orbital electron populations 1.20837 0.86541 1.04532 1.04208 1.21908 0.98489 0.88053 0.94530 1.22653 0.95118 1.00213 0.97823 1.22053 0.94859 0.98514 0.94450 1.22271 1.02405 0.92357 0.97882 1.20978 0.90326 0.93743 1.03139 1.18227 0.86270 0.84125 0.75789 1.90756 1.14171 1.87599 1.51753 1.46006 1.11095 1.04723 1.72796 1.21801 0.96749 0.81446 0.96577 0.87959 1.22872 0.98979 0.98358 0.96117 1.23287 0.96499 0.95321 0.93204 1.64702 1.25201 1.30001 1.03425 1.22025 0.90757 0.98394 0.97177 1.20712 0.82608 0.84594 0.89488 1.90449 1.46377 1.67346 1.45888 1.41914 1.14419 1.42777 1.21797 1.19679 1.00737 1.24931 1.00659 0.90345 1.26024 0.94760 0.99065 1.01429 1.69672 1.06819 1.44357 1.35239 0.84888 0.78158 0.77878 0.77518 1.19888 1.19608 1.19563 1.23268 0.99614 0.90777 0.95745 1.67327 1.08309 1.31886 1.11957 0.89143 0.87979 0.91383 0.80504 0.80504 0.83600 0.74924 0.91272 0.89750 0.95401 0.90145 0.86795 0.91090 0.76974 0.91292 0.87285 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.17 71.24 0.72 -0.28 16 2 C 0.11 1.65 6.78 42.70 0.29 1.94 16 3 C -0.14 -1.34 9.75 22.44 0.22 -1.12 16 4 C -0.07 -0.78 10.17 22.45 0.23 -0.55 16 5 C -0.13 -2.27 9.63 22.61 0.22 -2.05 16 6 C 0.06 1.25 6.75 41.89 0.28 1.53 16 7 C 0.57 15.08 7.81 86.88 0.68 15.76 16 8 O -0.56 -17.74 15.97 -3.75 -0.06 -17.80 16 9 N -0.70 -16.77 5.05 -440.93 -2.23 -19.00 16 10 C 0.14 3.50 3.34 45.87 0.15 3.65 16 11 H 0.10 2.59 7.56 -2.39 -0.02 2.58 16 12 C -0.12 -3.60 6.79 31.80 0.22 -3.38 16 13 C 0.04 1.57 5.31 86.59 0.46 2.03 16 14 N -0.51 -16.78 5.27 -886.79 -4.67 -21.45 16 15 C 0.05 1.66 5.52 85.56 0.47 2.13 16 16 C 0.44 20.91 7.50 87.65 0.66 21.57 16 17 O -0.61 -33.73 13.11 -3.08 -0.04 -33.77 16 18 N -0.57 -29.37 5.29 -306.98 -1.62 -30.99 16 19 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -49.57 13.05 21.66 0.28 -49.29 16 23 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 C 0.03 0.82 6.46 86.44 0.56 1.38 16 28 N -0.48 -10.05 9.45 -173.08 -1.64 -11.69 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.46 8.08 -2.38 -0.02 0.44 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 33 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 34 H 0.15 2.54 7.64 -2.91 -0.02 2.51 16 35 H 0.41 9.31 7.66 -92.71 -0.71 8.60 16 36 H 0.07 2.02 8.05 -2.39 -0.02 2.00 16 37 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.03 1.00 8.02 -2.39 -0.02 0.98 16 39 H 0.08 3.49 6.00 -2.38 -0.01 3.48 16 40 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 41 H 0.07 2.17 7.81 -2.38 -0.02 2.16 16 42 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 43 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 44 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.07 1.44 7.05 -2.39 -0.02 1.42 16 Total: -1.00 -73.81 377.29 -1.91 -75.72 By element: Atomic # 1 Polarization: 39.15 SS G_CDS: -0.40 Total: 38.74 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 6.44 Total: 24.39 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -9.87 Total: -132.42 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.10 Total: -51.57 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -73.81 -1.91 -75.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.440 kcal (2) G-P(sol) polarization free energy of solvation -73.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds