Wall clock time and date at job start Tue Mar 31 2020 16:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38605 * 119.55383 * 2 1 4 4 C 1.38572 * 119.35701 * 180.02562 * 3 2 1 5 5 C 1.38632 * 118.48633 * 359.97438 * 4 3 2 6 6 C 1.39267 * 119.06284 * 0.02562 * 5 4 3 7 7 C 1.48168 * 119.72423 * 179.97438 * 6 5 4 8 8 O 1.21512 * 120.00297 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99786 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99927 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.64086 * 323.30076 * 10 9 7 12 12 C 1.54590 * 110.72159 * 86.45256 * 10 9 7 13 13 C 1.54004 * 105.13802 * 140.49496 * 12 10 9 14 14 N 1.47898 * 107.05442 * 1.22299 * 13 12 10 15 15 C 1.46902 * 110.99974 * 214.15474 * 14 13 12 16 16 C 1.50697 * 109.47354 * 176.64065 * 15 14 13 17 17 O 1.21299 * 119.99898 * 6.13559 * 16 15 14 18 18 N 1.34779 * 120.00182 * 186.40994 * 16 15 14 19 19 C 1.37094 * 120.00139 * 179.72668 * 18 16 15 20 20 H 1.08002 * 120.00011 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00079 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99780 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00079 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47064 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46933 * 119.99698 * 23 21 19 26 26 H 1.48503 * 109.46571 * 239.99757 * 23 21 19 27 27 C 1.48529 * 105.82565 * 334.66947 * 14 13 12 28 28 N 1.31496 * 119.54897 * 180.25258 * 2 1 3 29 29 H 1.09007 * 109.47250 * 89.99996 * 1 2 3 30 30 H 1.08997 * 109.47312 * 210.00450 * 1 2 3 31 31 H 1.08999 * 109.47342 * 330.00676 * 1 2 3 32 32 H 1.08009 * 120.32159 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.76272 * 179.97438 * 4 3 2 34 34 H 1.08011 * 120.47245 * 180.02562 * 5 4 3 35 35 H 0.97003 * 120.00298 * 359.97438 * 9 7 6 36 36 H 1.08998 * 110.31433 * 21.58094 * 12 10 9 37 37 H 1.08998 * 110.31257 * 259.40775 * 12 10 9 38 38 H 1.08994 * 109.91482 * 241.87062 * 13 12 10 39 39 H 1.08999 * 110.08067 * 120.66496 * 13 12 10 40 40 H 1.09000 * 109.47070 * 56.63678 * 15 14 13 41 41 H 1.09004 * 109.46925 * 296.64079 * 15 14 13 42 42 H 0.97005 * 119.99449 * 359.72797 * 18 16 15 43 43 H 0.97002 * 119.99956 * 180.02562 * 22 21 19 44 44 H 1.08995 * 110.67280 * 157.63942 * 27 14 13 45 45 H 1.08997 * 110.66774 * 280.77751 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5763 1.2010 -0.0005 5 6 4.2333 -0.0198 -0.0005 6 6 3.4820 -1.1924 -0.0005 7 6 4.1691 -2.5052 -0.0011 8 8 5.3832 -2.5555 -0.0020 9 7 3.4475 -3.6434 -0.0005 10 6 4.1269 -4.9415 -0.0016 11 1 5.0289 -4.9025 -0.6122 12 6 4.4614 -5.3850 1.4410 13 6 4.1870 -6.9001 1.4698 14 7 3.7532 -7.2883 0.1102 15 6 2.7570 -8.3666 0.1633 16 6 2.2789 -8.6780 -1.2315 17 8 2.8023 -8.1424 -2.1858 18 7 1.2660 -9.5472 -1.4184 19 6 0.8273 -9.8262 -2.6870 20 1 1.2931 -9.3491 -3.5366 21 6 -0.2173 -10.7219 -2.8796 22 7 -0.7843 -11.3021 -1.8458 23 14 -0.8155 -11.1015 -4.6081 24 1 -0.0179 -10.3236 -5.5899 25 1 -0.6565 -12.5528 -4.8793 26 1 -2.2480 -10.7293 -4.7288 27 6 3.1774 -6.0612 -0.4970 28 7 2.1554 -1.1439 -0.0050 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6485 2.1399 0.0004 33 1 4.1319 2.1271 -0.0010 34 1 5.3127 -0.0609 -0.0005 35 1 2.4783 -3.6033 0.0006 36 1 3.8174 -4.8703 2.1541 37 1 5.5095 -5.1861 1.6645 38 1 3.3980 -7.1209 2.1886 39 1 5.0952 -7.4399 1.7380 40 1 1.9120 -8.0508 0.7751 41 1 3.2088 -9.2574 0.5998 42 1 0.8474 -9.9754 -0.6553 43 1 -1.5134 -11.9277 -1.9802 44 1 3.1938 -6.1260 -1.5849 45 1 2.1628 -5.8929 -0.1359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266302649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:28 Heat of formation + Delta-G solvation = -25.861907 kcal Electronic energy + Delta-G solvation = -27519.667952 eV Core-core repulsion = 23537.122902 eV Total energy + Delta-G solvation = -3982.545050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95918 -39.69049 -38.69677 -37.40675 -34.54804 -33.86624 -33.36797 -32.87187 -31.32002 -30.76245 -28.49297 -28.04650 -26.60753 -24.94242 -24.09665 -22.61487 -21.31617 -21.21977 -20.24656 -19.18507 -18.23870 -17.85303 -16.95933 -16.43385 -16.32047 -15.85979 -15.45822 -15.22894 -15.05350 -14.56654 -14.42513 -14.27250 -14.15823 -13.82842 -13.53669 -13.49905 -13.14970 -12.76348 -12.73378 -12.62345 -12.35445 -12.28783 -11.89321 -11.68838 -11.51183 -11.30844 -11.18587 -10.88276 -10.63045 -10.46274 -10.34072 -10.32579 -10.22687 -9.81876 -9.50302 -9.38718 -9.07597 -8.43325 -8.03983 -7.93376 -6.42148 -3.82788 0.32052 0.82511 2.52640 2.90008 3.16141 3.26892 3.34248 3.54402 3.70842 3.89746 4.07855 4.25948 4.30185 4.47194 4.58647 4.67944 4.70143 4.82361 5.01543 5.06316 5.16726 5.17354 5.20866 5.24296 5.25297 5.40868 5.46610 5.61549 5.68372 5.70650 5.72538 5.81747 5.90568 5.92046 6.07693 6.12945 6.20694 6.26728 6.42142 6.50008 7.13712 7.19989 7.28616 7.55039 7.55335 8.05740 8.06233 8.61229 9.17899 9.53826 10.05455 10.75674 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.002420 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.709629 B =11565.576539 C =12946.747259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.128 3.872 3 C -0.152 4.152 4 C -0.079 4.079 5 C -0.119 4.119 6 C 0.086 3.914 7 C 0.572 3.428 8 O -0.532 6.532 9 N -0.699 5.699 10 C 0.138 3.862 11 H 0.105 0.895 12 C -0.139 4.139 13 C 0.035 3.965 14 N -0.490 5.490 15 C 0.038 3.962 16 C 0.442 3.558 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.037 3.963 28 N -0.459 5.459 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.114 0.886 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 23.007 9.593 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.013 4.013 3 C -0.172 4.172 4 C -0.104 4.104 5 C -0.140 4.140 6 C -0.052 4.052 7 C 0.356 3.644 8 O -0.408 6.408 9 N -0.349 5.349 10 C 0.033 3.967 11 H 0.123 0.877 12 C -0.178 4.178 13 C -0.094 4.094 14 N -0.214 5.214 15 C -0.094 4.094 16 C 0.227 3.773 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.427 4.427 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.091 4.091 28 N -0.172 5.172 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.132 0.868 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.578 22.138 8.632 24.198 hybrid contribution -1.386 0.506 0.252 1.497 sum 3.192 22.644 8.884 24.533 Atomic orbital electron populations 1.20761 0.88151 1.03830 1.03576 1.21352 0.97275 0.87877 0.94771 1.22204 0.95061 0.99476 1.00469 1.21630 0.94429 0.98333 0.96039 1.22129 1.02377 0.91777 0.97735 1.21166 0.89646 0.94213 1.00162 1.17854 0.86516 0.83238 0.76764 1.90788 1.12923 1.87000 1.50125 1.45844 1.11067 1.05008 1.72993 1.22028 0.97021 0.81029 0.96667 0.87750 1.22795 1.02642 0.95433 0.96939 1.22916 1.00858 0.94865 0.90751 1.64492 1.35538 1.05768 1.15624 1.22102 0.94050 0.96013 0.97238 1.19713 0.83467 0.84295 0.89796 1.90497 1.58928 1.54358 1.42406 1.41873 1.30166 1.38683 1.09310 1.19747 1.14642 1.23202 0.85090 0.87840 1.25264 0.96756 0.96591 0.99380 1.69622 1.25117 1.29593 1.29998 0.85807 0.78424 0.78216 0.81950 1.19200 1.20737 1.20789 1.23524 0.94752 0.87478 1.03334 1.67395 1.08576 1.30239 1.10984 0.89987 0.90055 0.90499 0.84239 0.83976 0.83358 0.75282 0.91298 0.90433 0.93712 0.90066 0.93332 0.88906 0.77486 0.91932 0.86773 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.17 36.00 0.37 -0.27 16 2 C 0.13 1.11 6.78 -82.60 -0.56 0.55 16 3 C -0.15 -1.03 9.75 -39.32 -0.38 -1.41 16 4 C -0.08 -0.55 10.17 -39.31 -0.40 -0.95 16 5 C -0.12 -1.16 9.63 -39.05 -0.38 -1.54 16 6 C 0.09 1.03 6.75 -83.01 -0.56 0.47 16 7 C 0.57 7.94 7.81 -12.18 -0.10 7.84 16 8 O -0.53 -8.65 16.05 5.36 0.09 -8.56 16 9 N -0.70 -9.20 5.14 -52.84 -0.27 -9.48 16 10 C 0.14 1.97 3.34 -66.07 -0.22 1.75 16 11 H 0.10 1.67 7.69 -51.93 -0.40 1.27 16 12 C -0.14 -1.75 6.67 -25.37 -0.17 -1.92 16 13 C 0.03 0.46 6.70 -2.75 -0.02 0.44 16 14 N -0.49 -8.32 5.11 -231.89 -1.18 -9.50 16 15 C 0.04 0.68 5.30 -4.98 -0.03 0.65 16 16 C 0.44 10.38 7.42 -10.99 -0.08 10.29 16 17 O -0.58 -15.44 13.87 5.54 0.08 -15.36 16 18 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 19 C -0.30 -8.25 9.68 -14.94 -0.14 -8.39 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 23 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.04 0.62 5.20 -1.90 -0.01 0.61 16 28 N -0.46 -5.14 9.45 -6.06 -0.06 -5.19 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 33 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 34 H 0.15 1.36 7.64 -52.48 -0.40 0.96 16 35 H 0.41 5.02 7.87 -40.82 -0.32 4.70 16 36 H 0.07 0.81 8.05 -51.93 -0.42 0.39 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.54 7.68 -51.93 -0.40 0.14 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.79 7.98 -51.93 -0.41 0.37 16 41 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 43 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.11 2.27 6.43 -51.93 -0.33 1.94 16 45 H 0.04 0.69 7.89 -51.93 -0.41 0.28 16 LS Contribution 379.19 15.07 5.71 5.71 Total: -1.00 -33.23 379.19 -9.08 -42.31 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -6.31 Total: 13.50 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -2.78 Total: 8.59 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.85 Total: -62.19 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.16 Total: -23.92 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.23 -9.08 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.446 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds