Wall clock time and date at job start Tue Mar 31 2020 16:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38605 * 119.55383 * 2 1 4 4 C 1.38572 * 119.35701 * 180.02562 * 3 2 1 5 5 C 1.38632 * 118.48633 * 359.97438 * 4 3 2 6 6 C 1.39267 * 119.06284 * 0.02562 * 5 4 3 7 7 C 1.48168 * 119.72423 * 179.97438 * 6 5 4 8 8 O 1.21512 * 120.00297 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99786 * 179.97438 * 7 6 5 10 10 C 1.46509 * 119.99927 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.64086 * 323.30076 * 10 9 7 12 12 C 1.54590 * 110.72159 * 86.45256 * 10 9 7 13 13 C 1.54004 * 105.13802 * 140.49496 * 12 10 9 14 14 N 1.47898 * 107.05442 * 1.22299 * 13 12 10 15 15 C 1.46902 * 110.99974 * 214.15474 * 14 13 12 16 16 C 1.50697 * 109.47354 * 176.64065 * 15 14 13 17 17 O 1.21299 * 119.99898 * 6.13559 * 16 15 14 18 18 N 1.34779 * 120.00182 * 186.40994 * 16 15 14 19 19 C 1.37094 * 120.00139 * 179.72668 * 18 16 15 20 20 H 1.08002 * 120.00011 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00079 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99780 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00079 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47064 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46933 * 119.99698 * 23 21 19 26 26 H 1.48503 * 109.46571 * 239.99757 * 23 21 19 27 27 C 1.48529 * 105.82565 * 334.66947 * 14 13 12 28 28 N 1.31496 * 119.54897 * 180.25258 * 2 1 3 29 29 H 1.09007 * 109.47250 * 89.99996 * 1 2 3 30 30 H 1.08997 * 109.47312 * 210.00450 * 1 2 3 31 31 H 1.08999 * 109.47342 * 330.00676 * 1 2 3 32 32 H 1.08009 * 120.32159 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.76272 * 179.97438 * 4 3 2 34 34 H 1.08011 * 120.47245 * 180.02562 * 5 4 3 35 35 H 0.97003 * 120.00298 * 359.97438 * 9 7 6 36 36 H 1.08998 * 110.31433 * 21.58094 * 12 10 9 37 37 H 1.08998 * 110.31257 * 259.40775 * 12 10 9 38 38 H 1.08994 * 109.91482 * 241.87062 * 13 12 10 39 39 H 1.08999 * 110.08067 * 120.66496 * 13 12 10 40 40 H 1.09000 * 109.47070 * 56.63678 * 15 14 13 41 41 H 1.09004 * 109.46925 * 296.64079 * 15 14 13 42 42 H 0.97005 * 119.99449 * 359.72797 * 18 16 15 43 43 H 0.97002 * 119.99956 * 180.02562 * 22 21 19 44 44 H 1.08995 * 110.67280 * 157.63942 * 27 14 13 45 45 H 1.08997 * 110.66774 * 280.77751 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1906 1.2057 0.0000 4 6 3.5763 1.2010 -0.0005 5 6 4.2333 -0.0198 -0.0005 6 6 3.4820 -1.1924 -0.0005 7 6 4.1691 -2.5052 -0.0011 8 8 5.3832 -2.5555 -0.0020 9 7 3.4475 -3.6434 -0.0005 10 6 4.1269 -4.9415 -0.0016 11 1 5.0289 -4.9025 -0.6122 12 6 4.4614 -5.3850 1.4410 13 6 4.1870 -6.9001 1.4698 14 7 3.7532 -7.2883 0.1102 15 6 2.7570 -8.3666 0.1633 16 6 2.2789 -8.6780 -1.2315 17 8 2.8023 -8.1424 -2.1858 18 7 1.2660 -9.5472 -1.4184 19 6 0.8273 -9.8262 -2.6870 20 1 1.2931 -9.3491 -3.5366 21 6 -0.2173 -10.7219 -2.8796 22 7 -0.7843 -11.3021 -1.8458 23 14 -0.8155 -11.1015 -4.6081 24 1 -0.0179 -10.3236 -5.5899 25 1 -0.6565 -12.5528 -4.8793 26 1 -2.2480 -10.7293 -4.7288 27 6 3.1774 -6.0612 -0.4970 28 7 2.1554 -1.1439 -0.0050 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6485 2.1399 0.0004 33 1 4.1319 2.1271 -0.0010 34 1 5.3127 -0.0609 -0.0005 35 1 2.4783 -3.6033 0.0006 36 1 3.8174 -4.8703 2.1541 37 1 5.5095 -5.1861 1.6645 38 1 3.3980 -7.1209 2.1886 39 1 5.0952 -7.4399 1.7380 40 1 1.9120 -8.0508 0.7751 41 1 3.2088 -9.2574 0.5998 42 1 0.8474 -9.9754 -0.6553 43 1 -1.5134 -11.9277 -1.9802 44 1 3.1938 -6.1260 -1.5849 45 1 2.1628 -5.8929 -0.1359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266302649.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:27 Heat of formation + Delta-G solvation = -51.578018 kcal Electronic energy + Delta-G solvation = -27520.783086 eV Core-core repulsion = 23537.122902 eV Total energy + Delta-G solvation = -3983.660184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79170 -40.86838 -40.08668 -38.92940 -36.04509 -35.55907 -33.99956 -33.64102 -33.27638 -32.04569 -29.63841 -28.72375 -28.16547 -26.20141 -25.48477 -23.27650 -22.52064 -22.26164 -21.38135 -20.98554 -19.87873 -19.16503 -17.93564 -17.77995 -17.22356 -16.92699 -16.66312 -16.50159 -16.27752 -16.15824 -15.79881 -15.62406 -15.14139 -14.98820 -14.84252 -14.48923 -14.23203 -14.05028 -13.83129 -13.57792 -13.31070 -13.21643 -13.11036 -12.96365 -12.89788 -12.83844 -12.52403 -12.40623 -12.35235 -12.11201 -11.76478 -11.49875 -11.46687 -10.95782 -10.58444 -10.33364 -10.24440 -10.01049 -9.96185 -9.38257 -8.47098 -5.95364 -0.40974 0.20676 1.35823 1.41333 1.55383 1.61178 1.87404 2.03978 2.28391 2.77942 2.81887 2.99523 3.19868 3.37890 3.44751 3.70081 3.73768 3.85352 3.99524 4.01513 4.07358 4.20846 4.28686 4.32018 4.42517 4.44653 4.54746 4.58447 4.67376 4.75419 4.81099 4.84658 4.89478 5.03920 5.09253 5.10793 5.12947 5.20032 5.31921 5.41254 5.63495 5.79006 5.90173 6.07233 6.29525 6.60310 6.75568 7.02534 7.12923 7.55670 8.11662 8.70587 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013188 B = 0.002420 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.709629 B =11565.576539 C =12946.747259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.111 3.889 3 C -0.137 4.137 4 C -0.073 4.073 5 C -0.128 4.128 6 C 0.056 3.944 7 C 0.569 3.431 8 O -0.565 6.565 9 N -0.694 5.694 10 C 0.145 3.855 11 H 0.082 0.918 12 C -0.128 4.128 13 C 0.038 3.962 14 N -0.512 5.512 15 C 0.050 3.950 16 C 0.439 3.561 17 O -0.616 6.616 18 N -0.573 5.573 19 C -0.330 4.330 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.270 1.270 27 C 0.044 3.956 28 N -0.482 5.482 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.179 0.821 33 H 0.179 0.821 34 H 0.146 0.854 35 H 0.415 0.585 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.072 0.928 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 24.816 10.945 27.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.030 4.030 3 C -0.157 4.157 4 C -0.098 4.098 5 C -0.149 4.149 6 C -0.081 4.081 7 C 0.356 3.644 8 O -0.444 6.444 9 N -0.345 5.345 10 C 0.039 3.961 11 H 0.100 0.900 12 C -0.167 4.167 13 C -0.089 4.089 14 N -0.237 5.237 15 C -0.081 4.081 16 C 0.226 3.774 17 O -0.502 6.502 18 N -0.210 5.210 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.084 4.084 28 N -0.196 5.196 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.197 0.803 33 H 0.196 0.804 34 H 0.164 0.836 35 H 0.252 0.748 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.523 23.938 10.017 26.187 hybrid contribution -1.071 0.052 -0.173 1.086 sum 2.452 23.990 9.844 26.047 Atomic orbital electron populations 1.20841 0.86463 1.04718 1.04076 1.21931 0.98542 0.88020 0.94507 1.22661 0.95089 1.00217 0.97721 1.22055 0.94885 0.98442 0.94428 1.22271 1.02397 0.92344 0.97861 1.20922 0.90355 0.93550 1.03278 1.18265 0.86273 0.84109 0.75793 1.90751 1.14232 1.87595 1.51799 1.45780 1.11209 1.04616 1.72858 1.21781 0.95563 0.81055 0.97654 0.90018 1.22729 1.03201 0.95243 0.95536 1.22989 1.01991 0.95033 0.88884 1.64435 1.35297 1.05633 1.18318 1.21998 0.95303 0.97442 0.93396 1.20733 0.82156 0.82618 0.91860 1.90485 1.59824 1.55280 1.44571 1.41925 1.30960 1.39458 1.08672 1.19665 1.16009 1.24646 0.85639 0.90443 1.26017 0.96255 0.95825 1.03158 1.69676 1.25292 1.29627 1.31511 0.84894 0.78107 0.78214 0.77267 1.19938 1.19610 1.19510 1.23268 0.95652 0.88549 1.00944 1.67322 1.08290 1.32003 1.11962 0.89586 0.91138 0.87668 0.80348 0.80389 0.83629 0.74765 0.89933 0.90016 0.91594 0.88700 0.90894 0.86670 0.76963 0.91301 0.90941 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.17 71.23 0.72 -0.33 16 2 C 0.11 1.74 6.78 42.70 0.29 2.03 16 3 C -0.14 -1.41 9.75 22.44 0.22 -1.19 16 4 C -0.07 -0.83 10.17 22.44 0.23 -0.60 16 5 C -0.13 -2.42 9.63 22.61 0.22 -2.20 16 6 C 0.06 1.36 6.75 41.89 0.28 1.64 16 7 C 0.57 16.54 7.81 86.88 0.68 17.22 16 8 O -0.57 -19.29 16.05 -3.75 -0.06 -19.35 16 9 N -0.69 -19.09 5.14 -439.39 -2.26 -21.35 16 10 C 0.15 4.31 3.34 46.19 0.15 4.46 16 11 H 0.08 2.80 7.69 -2.39 -0.02 2.78 16 12 C -0.13 -3.11 6.67 31.47 0.21 -2.90 16 13 C 0.04 0.94 6.70 86.45 0.58 1.52 16 14 N -0.51 -17.19 5.11 -887.58 -4.53 -21.73 16 15 C 0.05 1.74 5.30 85.56 0.45 2.20 16 16 C 0.44 21.06 7.42 87.66 0.65 21.71 16 17 O -0.62 -34.37 13.87 -3.09 -0.04 -34.41 16 18 N -0.57 -29.48 5.29 -306.98 -1.62 -31.11 16 19 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 22 N -0.92 -49.65 13.05 21.66 0.28 -49.37 16 23 Si 0.99 43.22 29.55 68.60 2.03 45.24 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 C 0.04 1.52 5.20 86.65 0.45 1.97 16 28 N -0.48 -10.75 9.45 -173.08 -1.64 -12.39 16 29 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.45 8.08 -2.39 -0.02 0.43 16 32 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 33 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 34 H 0.15 2.72 7.64 -2.91 -0.02 2.70 16 35 H 0.42 10.59 7.87 -92.71 -0.73 9.86 16 36 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 1.38 7.68 -2.39 -0.02 1.36 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 2.22 7.98 -2.39 -0.02 2.20 16 41 H 0.12 3.54 8.14 -2.38 -0.02 3.52 16 42 H 0.40 19.31 7.90 -92.70 -0.73 18.57 16 43 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.07 3.10 6.43 -2.39 -0.02 3.09 16 45 H 0.05 1.59 7.89 -2.39 -0.02 1.57 16 Total: -1.00 -75.39 379.19 -1.85 -77.25 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: -0.43 Total: 39.91 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 6.42 Total: 27.29 kcal Atomic # 7 Polarization: -126.17 SS G_CDS: -9.77 Total: -135.94 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -0.10 Total: -53.76 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -75.39 -1.85 -77.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266302649.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.670 kcal (2) G-P(sol) polarization free energy of solvation -75.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds