Wall clock time and date at job start Tue Mar 31 2020 17:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36027 * 120.33686 * 2 1 4 4 C 1.40466 * 119.69338 * 179.97438 * 3 2 1 5 5 C 1.34946 * 120.30310 * 359.97438 * 4 3 2 6 6 N 1.36492 * 120.60813 * 359.97438 * 5 4 3 7 7 C 1.36839 * 132.56725 * 180.02562 * 6 5 4 8 8 C 1.35110 * 107.17263 * 179.35207 * 7 6 5 9 9 C 1.50708 * 125.68352 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46671 * 125.58425 * 9 8 7 11 11 O 1.21280 * 120.00214 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99672 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99799 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46917 * 179.97438 * 13 12 10 15 15 H 1.08991 * 109.47170 * 305.00115 * 14 13 12 16 16 O 1.42900 * 109.46835 * 65.00391 * 14 13 12 17 17 C 1.52994 * 109.46704 * 185.00167 * 14 13 12 18 18 N 1.46504 * 109.46822 * 180.02562 * 17 14 13 19 19 C 1.36942 * 119.99819 * 180.02562 * 18 17 14 20 20 H 1.07995 * 120.00263 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99765 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99986 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99883 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47160 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47037 * 120.00187 * 23 21 19 26 26 H 1.48499 * 109.46936 * 240.00066 * 23 21 19 27 27 N 1.33509 * 108.62906 * 0.56131 * 8 7 6 28 28 C 1.32563 * 109.15839 * 359.49816 * 27 8 7 29 29 H 1.09002 * 109.47152 * 90.00165 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00265 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00246 * 1 2 3 32 32 H 1.08006 * 120.15121 * 359.95362 * 3 2 1 33 33 H 1.08003 * 119.84997 * 179.97438 * 4 3 2 34 34 H 1.08004 * 119.70084 * 180.02562 * 5 4 3 35 35 H 1.08000 * 126.41210 * 359.97438 * 7 6 5 36 36 H 1.08998 * 109.47388 * 245.58835 * 9 8 7 37 37 H 1.09004 * 109.46935 * 5.58637 * 9 8 7 38 38 H 0.96998 * 119.99569 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.47200 * 300.00291 * 13 12 10 40 40 H 1.08998 * 109.46628 * 60.00084 * 13 12 10 41 41 H 0.96702 * 114.00068 * 59.99466 * 16 14 13 42 42 H 1.09004 * 109.47373 * 300.00276 * 17 14 13 43 43 H 1.09001 * 109.47470 * 60.00344 * 17 14 13 44 44 H 0.96995 * 120.00071 * 359.97438 * 18 17 14 45 45 H 0.97005 * 120.00018 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1740 0.0000 4 6 3.5987 1.1582 0.0005 5 6 4.2664 -0.0144 0.0016 6 7 3.5895 -1.1996 0.0027 7 6 4.0055 -2.5033 0.0043 8 6 2.8971 -3.2757 0.0193 9 6 2.8759 -4.7826 0.0269 10 6 2.0538 -5.2674 1.1933 11 8 1.5366 -4.4681 1.9446 12 7 1.8942 -6.5893 1.4020 13 6 1.0956 -7.0606 2.5362 14 6 1.0738 -8.5905 2.5439 15 1 0.7169 -8.9536 1.5802 16 8 2.3938 -9.0844 2.7799 17 6 0.1399 -9.0816 3.6517 18 7 0.1195 -10.5464 3.6595 19 6 -0.6525 -11.2156 4.5714 20 1 -1.2466 -10.6635 5.2845 21 6 -0.6722 -12.6036 4.5784 22 7 0.0507 -13.2764 3.7083 23 14 -1.7247 -13.5164 5.8228 24 1 -2.4365 -12.5369 6.6824 25 1 -2.7163 -14.3599 5.1083 26 1 -0.8582 -14.3783 6.6664 27 7 1.8238 -2.4817 0.0144 28 6 2.2188 -1.2163 0.0076 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.6620 2.1139 -0.0008 33 1 4.1467 2.0889 0.0001 34 1 5.3465 -0.0152 0.0024 35 1 5.0285 -2.8497 0.0047 36 1 2.4366 -5.1445 -0.9026 37 1 3.8944 -5.1599 0.1185 38 1 2.3088 -7.2286 0.8018 39 1 1.5351 -6.6984 3.4655 40 1 0.0770 -6.6836 2.4448 41 1 2.7755 -8.8001 3.6217 42 1 0.4968 -8.7183 4.6155 43 1 -0.8670 -8.7048 3.4717 44 1 0.6522 -11.0423 3.0183 45 1 0.0373 -14.2463 3.7135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268328783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:17 Heat of formation + Delta-G solvation = 10.930337 kcal Electronic energy + Delta-G solvation = -26811.423072 eV Core-core repulsion = 22830.473454 eV Total energy + Delta-G solvation = -3980.949619 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.07608 -39.65675 -37.96051 -37.42638 -34.82142 -34.27972 -33.92026 -32.39967 -31.27166 -30.58818 -29.20467 -27.89353 -27.25991 -25.20355 -23.14352 -22.84122 -22.30639 -21.37717 -21.12126 -19.99637 -17.93699 -17.39354 -17.16841 -16.99942 -16.46513 -16.07708 -15.90874 -15.85174 -15.02369 -14.89930 -14.55029 -14.45365 -14.28885 -13.78899 -13.57833 -13.41897 -13.21087 -13.10781 -12.95868 -12.80156 -12.40709 -12.21545 -12.10019 -12.02124 -11.85177 -11.68257 -10.94137 -10.88257 -10.82462 -10.57714 -10.22053 -10.12574 -9.91582 -9.77302 -9.44760 -8.99560 -8.91092 -8.88522 -8.05426 -6.91917 -5.74835 -3.04256 0.41382 0.98219 2.28940 2.52352 2.74338 3.15452 3.36225 3.44533 3.50236 3.52479 3.85302 4.05225 4.31959 4.42889 4.56561 4.59057 4.73532 4.80133 4.85791 4.92614 4.96489 5.08857 5.21559 5.23904 5.30943 5.36685 5.41971 5.53458 5.57751 5.62610 5.66523 5.78463 5.88882 5.96864 6.00644 6.19693 6.22953 6.35923 6.49498 6.54957 6.71228 6.79732 7.57205 7.70061 7.70730 7.97813 8.32960 8.43482 9.55241 10.12184 10.48263 11.47569 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.001692 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.631774 B =16542.046695 C =17110.134913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.036 4.036 3 C -0.119 4.119 4 C -0.138 4.138 5 C 0.045 3.955 6 N -0.361 5.361 7 C -0.094 4.094 8 C 0.078 3.922 9 C -0.060 4.060 10 C 0.513 3.487 11 O -0.524 6.524 12 N -0.725 5.725 13 C 0.092 3.908 14 C 0.090 3.910 15 H 0.104 0.896 16 O -0.553 6.553 17 C 0.126 3.874 18 N -0.726 5.726 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 N -0.457 5.457 28 C 0.222 3.778 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.404 0.596 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.373 0.627 42 H 0.023 0.977 43 H 0.029 0.971 44 H 0.389 0.611 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.186 30.762 -12.143 34.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.039 4.039 3 C -0.143 4.143 4 C -0.159 4.159 5 C -0.076 4.076 6 N -0.033 5.033 7 C -0.225 4.225 8 C -0.056 4.056 9 C -0.101 4.101 10 C 0.298 3.702 11 O -0.399 6.399 12 N -0.378 5.378 13 C -0.032 4.032 14 C 0.030 3.970 15 H 0.122 0.878 16 O -0.357 6.357 17 C -0.003 4.003 18 N -0.371 5.371 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 N -0.176 5.176 28 C -0.022 4.022 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.178 0.822 35 H 0.200 0.800 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.238 0.762 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.220 0.780 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.223 0.777 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.837 30.718 -12.029 34.425 hybrid contribution 0.875 -0.501 0.782 1.276 sum 10.712 30.217 -11.247 33.975 Atomic orbital electron populations 1.20693 0.88894 1.03827 1.02976 1.19069 0.97054 0.88394 0.99355 1.20906 0.93719 0.97835 1.01828 1.20756 0.94804 0.97084 1.03222 1.21555 0.98543 0.83335 1.04209 1.42758 1.08828 1.05924 1.45748 1.22325 1.00870 0.80679 1.18614 1.20068 0.88324 0.94942 1.02221 1.19989 1.02099 0.88980 0.99044 1.20297 0.81355 0.82244 0.86272 1.90747 1.47893 1.54236 1.47009 1.45902 1.53932 1.06839 1.31127 1.22058 0.96455 0.95391 0.89317 1.22380 0.84049 0.89745 1.00853 0.87801 1.86566 1.29568 1.76515 1.43079 1.21201 0.96387 0.87684 0.95001 1.42237 1.55034 0.98801 1.40981 1.19278 1.19226 0.89237 1.09633 0.91158 1.24760 1.00431 0.96351 0.99382 1.69691 1.43915 1.06325 1.37880 0.86109 0.79623 0.79797 0.80605 1.20559 1.21840 1.21843 1.70629 1.29140 0.97493 1.20300 1.20789 0.80090 0.94396 1.06914 0.90539 0.90943 0.90012 0.84186 0.83329 0.82178 0.80009 0.87174 0.87247 0.76166 0.91296 0.90569 0.77985 0.95977 0.95360 0.77655 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.03 36.01 0.36 -0.53 16 2 C -0.04 -0.36 5.90 -104.40 -0.62 -0.97 16 3 C -0.12 -0.82 9.72 -39.54 -0.38 -1.20 16 4 C -0.14 -0.78 9.98 -39.91 -0.40 -1.17 16 5 C 0.05 0.31 10.95 -16.65 -0.18 0.13 16 6 N -0.36 -3.71 2.95 -62.66 -0.18 -3.90 16 7 C -0.09 -0.92 11.63 -16.43 -0.19 -1.11 16 8 C 0.08 0.95 5.85 -82.97 -0.49 0.47 16 9 C -0.06 -0.57 6.26 -29.03 -0.18 -0.76 16 10 C 0.51 6.82 7.82 -10.98 -0.09 6.73 16 11 O -0.52 -9.39 15.56 5.56 0.09 -9.30 16 12 N -0.73 -8.61 5.50 -60.29 -0.33 -8.95 16 13 C 0.09 1.26 5.31 -4.04 -0.02 1.24 16 14 C 0.09 1.39 3.09 -26.73 -0.08 1.31 16 15 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 16 O -0.55 -8.78 13.03 -35.23 -0.46 -9.24 16 17 C 0.13 2.49 5.92 -4.04 -0.02 2.46 16 18 N -0.73 -18.55 5.49 -59.91 -0.33 -18.88 16 19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 N -0.46 -6.67 10.66 -9.00 -0.10 -6.77 16 28 C 0.22 2.78 7.52 -156.04 -1.17 1.61 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 33 H 0.15 0.34 8.06 -52.48 -0.42 -0.08 16 34 H 0.16 0.54 8.06 -52.48 -0.42 0.12 16 35 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.37 5.01 9.05 45.56 0.41 5.43 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.39 10.61 7.54 -40.82 -0.31 10.31 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -38.87 387.30 -9.19 -48.05 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.70 Total: 12.62 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -3.71 Total: 0.69 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -0.22 Total: -66.29 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.37 Total: -18.54 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.87 -9.19 -48.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268328783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.984 kcal (2) G-P(sol) polarization free energy of solvation -38.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds