Wall clock time and date at job start Tue Mar 31 2020 17:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36027 * 120.33686 * 2 1 4 4 C 1.40466 * 119.69338 * 179.97438 * 3 2 1 5 5 C 1.34946 * 120.30310 * 359.97438 * 4 3 2 6 6 N 1.36492 * 120.60813 * 359.97438 * 5 4 3 7 7 C 1.36839 * 132.56725 * 180.02562 * 6 5 4 8 8 C 1.35110 * 107.17263 * 179.35207 * 7 6 5 9 9 C 1.50708 * 125.68352 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46671 * 125.58425 * 9 8 7 11 11 O 1.21280 * 120.00214 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99672 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99799 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46917 * 179.97438 * 13 12 10 15 15 H 1.08991 * 109.47170 * 305.00115 * 14 13 12 16 16 O 1.42900 * 109.46835 * 65.00391 * 14 13 12 17 17 C 1.52994 * 109.46704 * 185.00167 * 14 13 12 18 18 N 1.46504 * 109.46822 * 180.02562 * 17 14 13 19 19 C 1.36942 * 119.99819 * 180.02562 * 18 17 14 20 20 H 1.07995 * 120.00263 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99765 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99986 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99883 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47160 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47037 * 120.00187 * 23 21 19 26 26 H 1.48499 * 109.46936 * 240.00066 * 23 21 19 27 27 N 1.33509 * 108.62906 * 0.56131 * 8 7 6 28 28 C 1.32563 * 109.15839 * 359.49816 * 27 8 7 29 29 H 1.09002 * 109.47152 * 90.00165 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00265 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00246 * 1 2 3 32 32 H 1.08006 * 120.15121 * 359.95362 * 3 2 1 33 33 H 1.08003 * 119.84997 * 179.97438 * 4 3 2 34 34 H 1.08004 * 119.70084 * 180.02562 * 5 4 3 35 35 H 1.08000 * 126.41210 * 359.97438 * 7 6 5 36 36 H 1.08998 * 109.47388 * 245.58835 * 9 8 7 37 37 H 1.09004 * 109.46935 * 5.58637 * 9 8 7 38 38 H 0.96998 * 119.99569 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.47200 * 300.00291 * 13 12 10 40 40 H 1.08998 * 109.46628 * 60.00084 * 13 12 10 41 41 H 0.96702 * 114.00068 * 59.99466 * 16 14 13 42 42 H 1.09004 * 109.47373 * 300.00276 * 17 14 13 43 43 H 1.09001 * 109.47470 * 60.00344 * 17 14 13 44 44 H 0.96995 * 120.00071 * 359.97438 * 18 17 14 45 45 H 0.97005 * 120.00018 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1740 0.0000 4 6 3.5987 1.1582 0.0005 5 6 4.2664 -0.0144 0.0016 6 7 3.5895 -1.1996 0.0027 7 6 4.0055 -2.5033 0.0043 8 6 2.8971 -3.2757 0.0193 9 6 2.8759 -4.7826 0.0269 10 6 2.0538 -5.2674 1.1933 11 8 1.5366 -4.4681 1.9446 12 7 1.8942 -6.5893 1.4020 13 6 1.0956 -7.0606 2.5362 14 6 1.0738 -8.5905 2.5439 15 1 0.7169 -8.9536 1.5802 16 8 2.3938 -9.0844 2.7799 17 6 0.1399 -9.0816 3.6517 18 7 0.1195 -10.5464 3.6595 19 6 -0.6525 -11.2156 4.5714 20 1 -1.2466 -10.6635 5.2845 21 6 -0.6722 -12.6036 4.5784 22 7 0.0507 -13.2764 3.7083 23 14 -1.7247 -13.5164 5.8228 24 1 -2.4365 -12.5369 6.6824 25 1 -2.7163 -14.3599 5.1083 26 1 -0.8582 -14.3783 6.6664 27 7 1.8238 -2.4817 0.0144 28 6 2.2188 -1.2163 0.0076 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.6620 2.1139 -0.0008 33 1 4.1467 2.0889 0.0001 34 1 5.3465 -0.0152 0.0024 35 1 5.0285 -2.8497 0.0047 36 1 2.4366 -5.1445 -0.9026 37 1 3.8944 -5.1599 0.1185 38 1 2.3088 -7.2286 0.8018 39 1 1.5351 -6.6984 3.4655 40 1 0.0770 -6.6836 2.4448 41 1 2.7755 -8.8001 3.6217 42 1 0.4968 -8.7183 4.6155 43 1 -0.8670 -8.7048 3.4717 44 1 0.6522 -11.0423 3.0183 45 1 0.0373 -14.2463 3.7135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268328783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:16 Heat of formation + Delta-G solvation = -19.326070 kcal Electronic energy + Delta-G solvation = -26812.735088 eV Core-core repulsion = 22830.473454 eV Total energy + Delta-G solvation = -3982.261635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.74330 -40.72844 -38.99266 -38.36582 -36.06326 -35.45629 -35.21031 -33.27763 -33.02127 -31.34761 -30.53455 -28.77678 -27.90163 -26.82484 -24.50387 -23.76003 -23.09960 -22.75153 -21.99114 -20.95517 -19.25771 -18.63615 -18.12367 -17.89472 -17.57076 -17.18320 -16.80106 -16.58762 -16.41459 -16.02630 -15.98164 -15.43980 -15.07878 -14.99054 -14.90575 -14.50805 -14.21168 -14.17340 -14.00039 -13.85942 -13.54775 -13.39330 -13.05270 -12.94424 -12.78706 -12.69779 -12.56276 -12.42754 -12.12626 -11.95810 -11.81211 -11.52611 -11.15875 -11.01091 -10.97538 -10.73806 -10.07872 -9.60012 -9.01695 -8.68897 -7.95567 -5.25095 -0.14347 0.36532 1.47344 1.48181 1.58396 1.67815 1.72787 1.82718 2.29832 2.55601 2.60284 3.22248 3.35727 3.46461 3.50276 3.62410 3.77124 3.95373 4.00603 4.04882 4.08188 4.21557 4.28882 4.34618 4.40671 4.46056 4.58359 4.61700 4.71029 4.74076 4.75193 4.81854 4.92634 4.97068 5.09869 5.19591 5.21205 5.37761 5.43404 5.48224 5.62107 5.69868 6.20253 6.25753 6.61284 6.80303 6.98333 7.32961 7.33936 8.07906 8.32105 9.27723 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031608 B = 0.001692 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.631774 B =16542.046695 C =17110.134913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.080 4.080 3 C -0.101 4.101 4 C -0.135 4.135 5 C 0.034 3.966 6 N -0.368 5.368 7 C -0.092 4.092 8 C 0.043 3.957 9 C -0.052 4.052 10 C 0.511 3.489 11 O -0.576 6.576 12 N -0.713 5.713 13 C 0.105 3.895 14 C 0.111 3.889 15 H 0.103 0.897 16 O -0.560 6.560 17 C 0.121 3.879 18 N -0.738 5.738 19 C -0.250 4.250 20 H 0.075 0.925 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.292 1.292 27 N -0.513 5.513 28 C 0.194 3.806 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.171 0.829 33 H 0.190 0.810 34 H 0.197 0.803 35 H 0.220 0.780 36 H 0.126 0.874 37 H 0.149 0.851 38 H 0.417 0.583 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.384 0.616 42 H 0.029 0.971 43 H 0.030 0.970 44 H 0.378 0.622 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.974 32.946 -12.364 37.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.083 4.083 3 C -0.124 4.124 4 C -0.155 4.155 5 C -0.087 4.087 6 N -0.039 5.039 7 C -0.223 4.223 8 C -0.090 4.090 9 C -0.092 4.092 10 C 0.299 3.701 11 O -0.455 6.455 12 N -0.367 5.367 13 C -0.020 4.020 14 C 0.051 3.949 15 H 0.121 0.879 16 O -0.367 6.367 17 C -0.006 4.006 18 N -0.382 5.382 19 C -0.381 4.381 20 H 0.093 0.907 21 C -0.267 4.267 22 N -0.617 5.617 23 Si 0.804 3.196 24 H -0.191 1.191 25 H -0.219 1.219 26 H -0.219 1.219 27 N -0.234 5.234 28 C -0.050 4.050 29 H 0.098 0.902 30 H 0.114 0.886 31 H 0.065 0.935 32 H 0.188 0.812 33 H 0.207 0.793 34 H 0.214 0.786 35 H 0.236 0.764 36 H 0.143 0.857 37 H 0.167 0.833 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.233 0.767 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.210 0.790 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 11.644 32.927 -12.257 37.013 hybrid contribution 0.371 -0.997 0.845 1.359 sum 12.015 31.929 -11.412 35.973 Atomic orbital electron populations 1.20618 0.88868 1.03163 1.03027 1.19366 0.97587 0.88813 1.02484 1.21388 0.94693 0.97848 0.98475 1.21326 0.94425 0.98387 1.01397 1.22364 1.00375 0.82534 1.03402 1.43013 1.08324 1.07085 1.45461 1.22877 1.01807 0.80405 1.17194 1.20560 0.88761 0.96044 1.03602 1.20082 1.03517 0.87996 0.97580 1.20992 0.80782 0.81801 0.86569 1.90727 1.50113 1.55512 1.49121 1.45782 1.53312 1.06970 1.30618 1.21759 0.96363 0.93756 0.90135 1.22056 0.83133 0.90609 0.99103 0.87935 1.86546 1.29307 1.76830 1.43975 1.21401 0.97620 0.84701 0.96917 1.42396 1.54504 1.01027 1.40225 1.19685 1.18925 0.89810 1.09720 0.90698 1.25595 1.02198 0.97322 1.01596 1.69842 1.45795 1.06245 1.39823 0.85052 0.77834 0.78416 0.78299 1.19150 1.21938 1.21886 1.70535 1.31150 0.99082 1.22593 1.21207 0.81614 0.94628 1.07534 0.90222 0.88624 0.93479 0.81175 0.79259 0.78601 0.76356 0.85662 0.83339 0.74634 0.91415 0.91537 0.76676 0.95302 0.95169 0.78976 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 10.03 71.24 0.71 -1.06 16 2 C -0.08 -1.58 5.90 -19.72 -0.12 -1.70 16 3 C -0.10 -1.16 9.72 22.30 0.22 -0.94 16 4 C -0.14 -1.06 9.98 22.06 0.22 -0.84 16 5 C 0.03 0.37 10.95 83.21 0.91 1.28 16 6 N -0.37 -7.20 2.95 -352.15 -1.04 -8.24 16 7 C -0.09 -1.69 11.63 83.19 0.97 -0.72 16 8 C 0.04 1.06 5.85 41.59 0.24 1.30 16 9 C -0.05 -0.94 6.26 29.11 0.18 -0.76 16 10 C 0.51 13.60 7.82 87.66 0.69 14.29 16 11 O -0.58 -21.49 15.56 -3.03 -0.05 -21.54 16 12 N -0.71 -16.48 5.50 -463.05 -2.55 -19.03 16 13 C 0.11 2.85 5.31 86.38 0.46 3.31 16 14 C 0.11 3.40 3.09 30.59 0.09 3.49 16 15 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 16 O -0.56 -17.28 13.03 -148.98 -1.94 -19.22 16 17 C 0.12 4.75 5.92 86.38 0.51 5.27 16 18 N -0.74 -37.91 5.49 -343.45 -1.89 -39.80 16 19 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 20 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.07 -4.35 5.50 84.86 0.47 -3.89 16 22 N -0.97 -59.99 13.06 21.65 0.28 -59.71 16 23 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 27 N -0.51 -15.91 10.66 -182.40 -1.94 -17.85 16 28 C 0.19 5.03 7.52 134.10 1.01 6.04 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.10 1.12 8.09 -2.39 -0.02 1.10 16 31 H 0.05 1.14 8.10 -2.38 -0.02 1.12 16 32 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 33 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 34 H 0.20 0.52 8.06 -2.91 -0.02 0.50 16 35 H 0.22 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.15 1.42 8.10 -2.39 -0.02 1.40 16 38 H 0.42 7.53 8.47 -92.71 -0.79 6.75 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.38 9.91 9.05 -74.06 -0.67 9.24 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.38 20.86 7.54 -92.71 -0.70 20.16 16 45 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -88.36 387.30 -0.81 -89.16 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -1.12 Total: 35.72 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 7.40 Total: 11.74 kcal Atomic # 7 Polarization: -137.49 SS G_CDS: -7.13 Total: -144.62 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -1.99 Total: -40.76 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -88.36 -0.81 -89.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268328783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.836 kcal (2) G-P(sol) polarization free energy of solvation -88.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds