Wall clock time and date at job start Tue Mar 31 2020 16:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00082 * 2 1 4 4 H 1.48500 * 109.46820 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46837 * 299.99796 * 3 2 1 6 6 H 1.48492 * 109.47046 * 59.99959 * 3 2 1 7 7 C 1.37874 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47135 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47282 * 184.95524 * 10 9 7 12 12 C 1.34672 * 118.47043 * 84.65575 * 11 10 9 13 13 O 1.21284 * 118.10885 * 0.06714 * 12 11 10 14 14 C 1.50309 * 123.31181 * 180.37185 * 12 11 10 15 15 C 1.52982 * 109.18570 * 21.19193 * 14 12 11 16 16 C 1.52313 * 109.47908 * 308.12458 * 15 14 12 17 17 H 1.09007 * 109.81852 * 185.09865 * 16 15 14 18 18 C 1.45416 * 117.26969 * 264.60719 * 11 10 9 19 19 H 1.08998 * 111.33183 * 63.67908 * 18 11 10 20 20 C 1.55421 * 108.16232 * 300.79763 * 18 11 10 21 21 C 1.54338 * 103.00633 * 276.41405 * 20 18 11 22 22 N 1.46916 * 111.03312 * 306.75082 * 16 15 14 23 23 C 1.34774 * 125.73302 * 323.18939 * 22 16 15 24 24 O 1.21688 * 119.99921 * 0.02562 * 23 22 16 25 25 C 1.46766 * 120.00151 * 180.02562 * 23 22 16 26 26 C 1.36663 * 126.84372 * 179.68653 * 25 23 22 27 27 N 1.33318 * 107.78109 * 179.89562 * 26 25 23 28 28 C 1.30855 * 109.69213 * 0.38105 * 27 26 25 29 29 N 1.34497 * 109.15873 * 359.76246 * 28 27 26 30 30 H 0.97005 * 126.47567 * 180.02562 * 29 28 27 31 31 H 0.97003 * 119.99931 * 0.02562 * 1 2 3 32 32 H 1.08989 * 109.47117 * 59.99559 * 9 7 2 33 33 H 1.09005 * 109.46377 * 299.99583 * 9 7 2 34 34 H 1.09006 * 109.47309 * 64.95685 * 10 9 7 35 35 H 1.08999 * 109.47355 * 304.95762 * 10 9 7 36 36 H 1.08996 * 109.51607 * 261.27670 * 14 12 11 37 37 H 1.09002 * 109.51771 * 141.10012 * 14 12 11 38 38 H 1.08997 * 109.47193 * 188.12434 * 15 14 12 39 39 H 1.08996 * 109.47043 * 68.12605 * 15 14 12 40 40 H 1.09003 * 110.71000 * 158.03574 * 20 18 11 41 41 H 1.08998 * 110.70919 * 34.79300 * 20 18 11 42 42 H 1.08999 * 109.88791 * 97.25212 * 21 20 18 43 43 H 1.08998 * 109.88974 * 218.43917 * 21 20 18 44 44 H 1.08000 * 126.10914 * 359.97438 * 26 25 23 45 45 H 1.07998 * 125.42688 * 179.78740 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5167 -4.9275 -0.1188 12 6 1.1794 -5.3606 -1.3485 13 8 1.4973 -4.6804 -2.3010 14 6 0.4256 -6.6372 -1.5962 15 6 -0.3184 -7.0372 -0.3207 16 6 0.6537 -7.0494 0.8518 17 1 0.1509 -7.4204 1.7449 18 6 1.2059 -5.6360 1.1125 19 1 0.5341 -5.0559 1.7451 20 6 2.5425 -5.9530 1.8396 21 6 3.0133 -7.2513 1.1506 22 7 1.8256 -7.8848 0.5565 23 6 1.8145 -9.0378 -0.1414 24 8 0.7679 -9.4684 -0.5885 25 6 3.0648 -9.7740 -0.3622 26 6 3.2138 -10.9517 -1.0393 27 7 4.5062 -11.2774 -1.0103 28 6 5.1745 -10.3708 -0.3441 29 7 4.3248 -9.4177 0.0783 30 1 4.5535 -8.6288 0.5944 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8895 33 1 0.6240 -2.5566 0.8904 34 1 2.8120 -3.6556 0.9316 35 1 2.9289 -3.5557 -0.8417 36 1 1.1256 -7.4258 -1.8720 37 1 -0.2910 -6.4863 -2.4036 38 1 -0.7477 -8.0311 -0.4470 39 1 -1.1151 -6.3197 -0.1246 40 1 2.3724 -6.1209 2.9031 41 1 3.2647 -5.1512 1.6855 42 1 3.7372 -7.0156 0.3705 43 1 3.4615 -7.9197 1.8857 44 1 2.4255 -11.5168 -1.5143 45 1 6.2391 -10.3854 -0.1626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268867397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:21 Heat of formation + Delta-G solvation = 7.740854 kcal Electronic energy + Delta-G solvation = -29755.102073 eV Core-core repulsion = 25774.014148 eV Total energy + Delta-G solvation = -3981.087925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.59787 -41.23499 -39.06826 -37.61723 -35.07760 -34.24476 -32.98896 -32.85499 -31.25724 -30.04917 -29.17083 -28.63811 -25.22565 -24.99127 -23.52304 -22.52387 -22.25683 -21.51269 -21.05188 -20.40779 -18.26845 -17.92115 -17.23784 -16.89217 -16.34255 -16.27237 -15.65058 -15.52467 -15.33109 -14.68095 -14.67017 -14.47877 -14.33679 -13.92830 -13.73126 -13.64932 -13.45455 -12.89670 -12.72846 -12.62373 -12.38439 -12.15186 -11.93593 -11.43504 -11.29408 -11.09838 -11.03249 -10.95469 -10.69206 -10.65208 -10.54676 -10.13558 -9.96773 -9.85059 -9.36717 -9.20709 -9.03127 -8.88071 -8.38850 -8.11702 -6.04057 -4.07005 0.96726 2.36547 2.51244 2.66930 3.02347 3.06321 3.28231 3.32182 3.36951 3.40433 3.90380 4.08295 4.21612 4.36921 4.43161 4.53788 4.65686 4.69867 4.80770 4.85160 4.95788 5.09038 5.10485 5.28154 5.32438 5.39241 5.44047 5.49085 5.56280 5.64472 5.79390 5.88619 6.02253 6.07945 6.14807 6.20801 6.44904 6.77660 6.78976 6.83068 7.04642 7.52682 7.57118 7.71144 7.77271 7.94599 7.96617 8.33184 8.62458 8.99775 9.56905 11.07426 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.003085 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.360547 B = 9074.437052 C = 9518.396674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C 0.015 3.985 10 C 0.113 3.887 11 N -0.599 5.599 12 C 0.512 3.488 13 O -0.539 6.539 14 C -0.124 4.124 15 C -0.133 4.133 16 C 0.135 3.865 17 H 0.096 0.904 18 C 0.137 3.863 19 H 0.109 0.891 20 C -0.148 4.148 21 C 0.091 3.909 22 N -0.611 5.611 23 C 0.612 3.388 24 O -0.517 6.517 25 C -0.086 4.086 26 C 0.071 3.929 27 N -0.500 5.500 28 C 0.214 3.786 29 N -0.558 5.558 30 H 0.423 0.577 31 H 0.260 0.740 32 H 0.023 0.977 33 H 0.014 0.986 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.184 0.816 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -20.441 6.985 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.023 4.023 10 C -0.008 4.008 11 N -0.333 5.333 12 C 0.300 3.700 13 O -0.416 6.416 14 C -0.164 4.164 15 C -0.170 4.170 16 C 0.032 3.968 17 H 0.114 0.886 18 C 0.031 3.969 19 H 0.126 0.874 20 C -0.186 4.186 21 C -0.032 4.032 22 N -0.346 5.346 23 C 0.402 3.598 24 O -0.392 6.392 25 C -0.202 4.202 26 C -0.083 4.083 27 N -0.219 5.219 28 C -0.070 4.070 29 N -0.167 5.167 30 H 0.267 0.733 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.201 0.799 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 6.677 -20.981 5.816 22.773 hybrid contribution 0.399 2.147 0.780 2.319 sum 7.076 -18.834 6.596 21.173 Atomic orbital electron populations 1.69980 1.06079 1.26534 1.50563 1.24995 0.94838 0.99267 0.95195 0.86521 0.80056 0.83732 0.77586 1.19727 1.20971 1.21031 1.21109 0.92950 0.90756 1.50984 0.92619 1.19340 0.94367 0.90978 0.97592 1.21905 0.95966 0.82115 1.00765 1.47667 1.57594 1.23681 1.04313 1.20464 0.79837 0.87149 0.82532 1.90736 1.54092 1.56118 1.40671 1.21526 1.00153 0.95224 0.99455 1.21745 0.97775 1.04700 0.92821 1.21737 0.86777 0.88778 0.99470 0.88637 1.21929 0.96117 0.91517 0.87358 0.87362 1.23270 0.98963 0.96349 1.00056 1.22238 0.88747 0.95251 0.96999 1.48332 1.09648 1.22392 1.54229 1.16433 0.86845 0.78924 0.77637 1.90836 1.30719 1.67373 1.50298 1.21155 0.85364 1.01910 1.11815 1.22678 0.94044 0.93139 0.98456 1.70256 1.04596 1.27265 1.19797 1.25240 0.98132 0.86249 0.97350 1.44005 1.07458 1.22545 1.42662 0.73335 0.93020 0.95851 0.96779 0.91721 0.91126 0.89343 0.88311 0.88113 0.89947 0.88997 0.88022 0.91404 0.91210 0.79871 0.76839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.38 5.24 -27.88 -0.15 0.24 16 10 C 0.11 2.22 4.77 -4.04 -0.02 2.20 16 11 N -0.60 -9.78 2.56 -165.06 -0.42 -10.20 16 12 C 0.51 9.42 7.46 -11.22 -0.08 9.34 16 13 O -0.54 -12.63 16.27 5.55 0.09 -12.54 16 14 C -0.12 -1.82 5.60 -28.08 -0.16 -1.98 16 15 C -0.13 -1.60 4.95 -27.09 -0.13 -1.73 16 16 C 0.14 1.41 3.26 -67.55 -0.22 1.19 16 17 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 18 C 0.14 1.59 3.61 -66.72 -0.24 1.35 16 19 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 20 C -0.15 -1.23 6.34 -24.74 -0.16 -1.38 16 21 C 0.09 0.69 5.10 -2.99 -0.02 0.67 16 22 N -0.61 -6.13 2.83 -165.79 -0.47 -6.60 16 23 C 0.61 7.12 6.34 -12.82 -0.08 7.04 16 24 O -0.52 -7.19 14.17 5.20 0.07 -7.12 16 25 C -0.09 -0.89 6.90 -82.14 -0.57 -1.46 16 26 C 0.07 0.77 11.66 -17.48 -0.20 0.57 16 27 N -0.50 -5.30 11.20 -14.43 -0.16 -5.46 16 28 C 0.21 1.55 13.01 -90.57 -1.18 0.37 16 29 N -0.56 -4.07 5.67 -10.79 -0.06 -4.13 16 30 H 0.42 2.09 5.14 -40.82 -0.21 1.88 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.02 0.68 8.03 -51.94 -0.42 0.26 16 33 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 1.08 5.97 -51.93 -0.31 0.77 16 35 H 0.07 1.54 7.40 -51.93 -0.38 1.15 16 36 H 0.09 1.32 6.14 -51.93 -0.32 1.01 16 37 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.10 1.23 6.28 -51.93 -0.33 0.91 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.93 5.92 -51.93 -0.31 0.62 16 42 H 0.07 0.53 7.17 -51.93 -0.37 0.16 16 43 H 0.07 0.35 7.22 -51.93 -0.37 -0.03 16 44 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -37.08 355.95 -9.43 -46.51 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.95 Total: 0.52 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -3.61 Total: 3.21 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.38 Total: -52.41 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.16 Total: -19.66 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.08 -9.43 -46.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268867397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.247 kcal (2) G-P(sol) polarization free energy of solvation -37.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds