Wall clock time and date at job start Tue Mar 31 2020 16:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00082 * 2 1 4 4 H 1.48500 * 109.46820 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46837 * 299.99796 * 3 2 1 6 6 H 1.48492 * 109.47046 * 59.99959 * 3 2 1 7 7 C 1.37874 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99845 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47135 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.47282 * 184.95524 * 10 9 7 12 12 C 1.34672 * 118.47043 * 84.65575 * 11 10 9 13 13 O 1.21284 * 118.10885 * 0.06714 * 12 11 10 14 14 C 1.50309 * 123.31181 * 180.37185 * 12 11 10 15 15 C 1.52982 * 109.18570 * 21.19193 * 14 12 11 16 16 C 1.52313 * 109.47908 * 308.12458 * 15 14 12 17 17 H 1.09007 * 109.81852 * 185.09865 * 16 15 14 18 18 C 1.45416 * 117.26969 * 264.60719 * 11 10 9 19 19 H 1.08998 * 111.33183 * 63.67908 * 18 11 10 20 20 C 1.55421 * 108.16232 * 300.79763 * 18 11 10 21 21 C 1.54338 * 103.00633 * 276.41405 * 20 18 11 22 22 N 1.46916 * 111.03312 * 306.75082 * 16 15 14 23 23 C 1.34774 * 125.73302 * 323.18939 * 22 16 15 24 24 O 1.21688 * 119.99921 * 0.02562 * 23 22 16 25 25 C 1.46766 * 120.00151 * 180.02562 * 23 22 16 26 26 C 1.36663 * 126.84372 * 179.68653 * 25 23 22 27 27 N 1.33318 * 107.78109 * 179.89562 * 26 25 23 28 28 C 1.30855 * 109.69213 * 0.38105 * 27 26 25 29 29 N 1.34497 * 109.15873 * 359.76246 * 28 27 26 30 30 H 0.97005 * 126.47567 * 180.02562 * 29 28 27 31 31 H 0.97003 * 119.99931 * 0.02562 * 1 2 3 32 32 H 1.08989 * 109.47117 * 59.99559 * 9 7 2 33 33 H 1.09005 * 109.46377 * 299.99583 * 9 7 2 34 34 H 1.09006 * 109.47309 * 64.95685 * 10 9 7 35 35 H 1.08999 * 109.47355 * 304.95762 * 10 9 7 36 36 H 1.08996 * 109.51607 * 261.27670 * 14 12 11 37 37 H 1.09002 * 109.51771 * 141.10012 * 14 12 11 38 38 H 1.08997 * 109.47193 * 188.12434 * 15 14 12 39 39 H 1.08996 * 109.47043 * 68.12605 * 15 14 12 40 40 H 1.09003 * 110.71000 * 158.03574 * 20 18 11 41 41 H 1.08998 * 110.70919 * 34.79300 * 20 18 11 42 42 H 1.08999 * 109.88791 * 97.25212 * 21 20 18 43 43 H 1.08998 * 109.88974 * 218.43917 * 21 20 18 44 44 H 1.08000 * 126.10914 * 359.97438 * 26 25 23 45 45 H 1.07998 * 125.42688 * 179.78740 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5167 -4.9275 -0.1188 12 6 1.1794 -5.3606 -1.3485 13 8 1.4973 -4.6804 -2.3010 14 6 0.4256 -6.6372 -1.5962 15 6 -0.3184 -7.0372 -0.3207 16 6 0.6537 -7.0494 0.8518 17 1 0.1509 -7.4204 1.7449 18 6 1.2059 -5.6360 1.1125 19 1 0.5341 -5.0559 1.7451 20 6 2.5425 -5.9530 1.8396 21 6 3.0133 -7.2513 1.1506 22 7 1.8256 -7.8848 0.5565 23 6 1.8145 -9.0378 -0.1414 24 8 0.7679 -9.4684 -0.5885 25 6 3.0648 -9.7740 -0.3622 26 6 3.2138 -10.9517 -1.0393 27 7 4.5062 -11.2774 -1.0103 28 6 5.1745 -10.3708 -0.3441 29 7 4.3248 -9.4177 0.0783 30 1 4.5535 -8.6288 0.5944 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8895 33 1 0.6240 -2.5566 0.8904 34 1 2.8120 -3.6556 0.9316 35 1 2.9289 -3.5557 -0.8417 36 1 1.1256 -7.4258 -1.8720 37 1 -0.2910 -6.4863 -2.4036 38 1 -0.7477 -8.0311 -0.4470 39 1 -1.1151 -6.3197 -0.1246 40 1 2.3724 -6.1209 2.9031 41 1 3.2647 -5.1512 1.6855 42 1 3.7372 -7.0156 0.3705 43 1 3.4615 -7.9197 1.8857 44 1 2.4255 -11.5168 -1.5143 45 1 6.2391 -10.3854 -0.1626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268867397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:21 Heat of formation + Delta-G solvation = -17.569613 kcal Electronic energy + Delta-G solvation = -29756.199617 eV Core-core repulsion = 25774.014148 eV Total energy + Delta-G solvation = -3982.185469 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.29040 -42.25454 -40.24907 -38.70107 -36.55130 -35.38231 -34.75783 -33.67226 -32.36422 -31.23701 -30.42932 -29.60408 -26.98586 -25.91438 -24.66480 -23.62923 -23.27839 -22.49540 -22.06799 -21.36886 -19.36520 -18.81049 -18.69363 -17.88774 -17.80233 -17.34418 -16.99645 -16.64309 -16.37323 -16.24145 -15.67365 -15.40841 -15.18112 -14.91655 -14.75630 -14.60219 -14.52576 -14.31778 -14.26858 -13.88330 -13.72492 -13.55130 -13.00987 -12.89178 -12.74632 -12.49819 -12.35807 -12.13800 -12.08232 -11.84042 -11.69427 -11.44049 -11.36749 -11.20950 -11.03272 -10.60341 -10.55790 -9.98219 -9.61076 -9.59813 -8.21992 -6.33497 0.24232 1.38445 1.40705 1.52606 1.56713 1.62612 1.83031 2.00853 2.06028 2.25763 2.41126 3.08711 3.12213 3.33713 3.49720 3.57689 3.71946 3.82491 3.89778 3.97798 4.09337 4.21684 4.23654 4.34514 4.37319 4.44764 4.51867 4.62724 4.67356 4.73125 4.75511 4.81727 4.90957 4.94551 5.05034 5.08777 5.23914 5.30389 5.46821 5.48782 5.63483 5.84614 6.18378 6.23839 6.29707 6.51609 6.82915 6.85527 6.95529 7.17743 7.35969 8.90286 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.003085 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.360547 B = 9074.437052 C = 9518.396674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.026 3.974 10 C 0.131 3.869 11 N -0.590 5.590 12 C 0.505 3.495 13 O -0.602 6.602 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.139 3.861 17 H 0.128 0.872 18 C 0.120 3.880 19 H 0.114 0.886 20 C -0.136 4.136 21 C 0.087 3.913 22 N -0.610 5.610 23 C 0.610 3.390 24 O -0.549 6.549 25 C -0.100 4.100 26 C 0.055 3.945 27 N -0.536 5.536 28 C 0.233 3.767 29 N -0.547 5.547 30 H 0.436 0.564 31 H 0.263 0.737 32 H -0.030 1.030 33 H 0.002 0.998 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.107 0.893 44 H 0.179 0.821 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.306 -20.911 9.748 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.181 1.181 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.083 0.917 9 C -0.012 4.012 10 C 0.009 3.991 11 N -0.321 5.321 12 C 0.295 3.705 13 O -0.483 6.483 14 C -0.153 4.153 15 C -0.165 4.165 16 C 0.036 3.964 17 H 0.145 0.855 18 C 0.016 3.984 19 H 0.132 0.868 20 C -0.174 4.174 21 C -0.036 4.036 22 N -0.344 5.344 23 C 0.400 3.600 24 O -0.428 6.428 25 C -0.217 4.217 26 C -0.099 4.099 27 N -0.256 5.256 28 C -0.051 4.051 29 N -0.156 5.156 30 H 0.282 0.718 31 H 0.071 0.929 32 H -0.012 1.012 33 H 0.021 0.979 34 H 0.122 0.878 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.125 0.875 44 H 0.197 0.803 45 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 9.090 -21.459 8.655 24.860 hybrid contribution -0.345 2.268 -0.091 2.296 sum 8.745 -19.191 8.564 22.762 Atomic orbital electron populations 1.70121 1.07941 1.27663 1.51642 1.25988 0.95734 1.03481 0.94668 0.85376 0.79265 0.78627 0.77630 1.18127 1.21268 1.19829 1.21582 0.93655 0.91904 1.50516 0.91660 1.19160 0.94605 0.93140 0.94330 1.21483 0.94334 0.81658 1.01628 1.47630 1.56299 1.22670 1.05544 1.21136 0.79231 0.87728 0.82445 1.90700 1.56599 1.58197 1.42807 1.21435 0.99770 0.93139 1.00967 1.21712 0.98047 1.04588 0.92175 1.21787 0.86709 0.88201 0.99680 0.85471 1.22335 0.98901 0.91728 0.85416 0.86798 1.23269 0.96182 0.96298 1.01663 1.22458 0.87817 0.95602 0.97691 1.48343 1.10379 1.21815 1.53860 1.16590 0.86870 0.79202 0.77354 1.90813 1.31903 1.68376 1.51668 1.20936 0.86054 1.01895 1.12795 1.22770 0.94535 0.93692 0.98886 1.70252 1.04602 1.29070 1.21650 1.26126 0.99538 0.84671 0.94781 1.43930 1.06291 1.22969 1.42407 0.71842 0.92867 1.01208 0.97917 0.87816 0.93577 0.89395 0.88940 0.87913 0.89856 0.85373 0.88500 0.91690 0.87468 0.80349 0.72428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 44.05 29.54 68.60 2.03 46.07 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 8 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.03 1.34 5.24 29.85 0.16 1.50 16 10 C 0.13 5.14 4.77 86.38 0.41 5.56 16 11 N -0.59 -19.21 2.56 -794.56 -2.03 -21.24 16 12 C 0.50 19.28 7.46 87.55 0.65 19.94 16 13 O -0.60 -29.94 16.27 -3.04 -0.05 -29.99 16 14 C -0.11 -3.45 5.60 29.72 0.17 -3.28 16 15 C -0.13 -3.01 4.95 30.36 0.15 -2.86 16 16 C 0.14 2.58 3.26 45.01 0.15 2.73 16 17 H 0.13 1.68 8.14 -2.38 -0.02 1.67 16 18 C 0.12 2.52 3.61 46.35 0.17 2.69 16 19 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 20 C -0.14 -1.69 6.34 31.88 0.20 -1.49 16 21 C 0.09 0.98 5.10 86.71 0.44 1.42 16 22 N -0.61 -10.77 2.83 -796.65 -2.25 -13.02 16 23 C 0.61 13.44 6.34 86.47 0.55 13.98 16 24 O -0.55 -15.20 14.17 -4.31 -0.06 -15.26 16 25 C -0.10 -1.94 6.90 40.01 0.28 -1.66 16 26 C 0.06 1.18 11.66 84.10 0.98 2.16 16 27 N -0.54 -10.62 11.20 -199.56 -2.24 -12.85 16 28 C 0.23 2.66 13.01 180.33 2.35 5.00 16 29 N -0.55 -6.36 5.67 -188.04 -1.07 -7.42 16 30 H 0.44 2.61 5.14 -92.70 -0.48 2.13 16 31 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 32 H -0.03 -1.92 8.03 -2.39 -0.02 -1.94 16 33 H 0.00 0.13 8.14 -2.38 -0.02 0.12 16 34 H 0.10 3.26 5.97 -2.38 -0.01 3.25 16 35 H 0.05 2.05 7.40 -2.39 -0.02 2.03 16 36 H 0.09 2.71 6.14 -2.39 -0.01 2.69 16 37 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.10 2.47 6.28 -2.39 -0.02 2.46 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.10 1.37 5.92 -2.39 -0.01 1.36 16 42 H 0.06 0.81 7.17 -2.39 -0.02 0.79 16 43 H 0.11 0.48 7.22 -2.39 -0.02 0.47 16 44 H 0.18 3.72 8.06 -2.91 -0.02 3.69 16 45 H 0.26 0.24 8.06 -2.91 -0.02 0.21 16 Total: -1.00 -86.42 355.95 2.52 -83.91 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.56 Total: 10.72 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 7.34 Total: 16.07 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -7.30 Total: -111.52 kcal Atomic # 8 Polarization: -45.14 SS G_CDS: -0.11 Total: -45.25 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -86.42 2.52 -83.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268867397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.340 kcal (2) G-P(sol) polarization free energy of solvation -86.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds