Wall clock time and date at job start Tue Mar 31 2020 16:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00148 * 2 1 4 4 H 1.48498 * 109.46999 * 269.99898 * 3 2 1 5 5 H 1.48496 * 109.47166 * 30.00110 * 3 2 1 6 6 H 1.48503 * 109.46920 * 150.00168 * 3 2 1 7 7 C 1.37878 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00104 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47096 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46996 * 184.95651 * 10 9 7 12 12 C 1.33117 * 117.26710 * 84.59317 * 11 10 9 13 13 O 1.21286 * 118.57388 * 359.86418 * 12 11 10 14 14 C 1.50309 * 122.85345 * 179.84997 * 12 11 10 15 15 C 1.52978 * 109.19011 * 21.46256 * 14 12 11 16 16 C 1.52317 * 109.48210 * 308.14315 * 15 14 12 17 17 H 1.08999 * 109.98963 * 185.21107 * 16 15 14 18 18 C 1.45422 * 117.26762 * 264.60731 * 11 10 9 19 19 H 1.09005 * 111.32781 * 64.70031 * 18 11 10 20 20 C 1.55412 * 108.16720 * 300.83604 * 18 11 10 21 21 C 1.54348 * 103.09183 * 277.06637 * 20 18 11 22 22 N 1.46915 * 110.84728 * 306.86364 * 16 15 14 23 23 C 1.34773 * 125.73315 * 323.10071 * 22 16 15 24 24 O 1.21572 * 120.00117 * 0.02562 * 23 22 16 25 25 C 1.47716 * 120.00078 * 180.27715 * 23 22 16 26 26 C 1.41494 * 126.52015 * 179.72596 * 25 23 22 27 27 C 1.35368 * 105.50245 * 179.97438 * 26 25 23 28 28 N 1.35030 * 107.23047 * 359.97438 * 27 26 25 29 29 H 0.97000 * 124.88490 * 179.97438 * 28 27 26 30 30 N 1.28472 * 110.22640 * 359.72697 * 28 27 26 31 31 H 0.97001 * 119.99771 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46827 * 59.99680 * 9 7 2 33 33 H 1.08996 * 109.46953 * 299.99579 * 9 7 2 34 34 H 1.09002 * 109.46866 * 64.95763 * 10 9 7 35 35 H 1.08992 * 109.47401 * 304.96007 * 10 9 7 36 36 H 1.09003 * 109.51740 * 141.37967 * 14 12 11 37 37 H 1.09004 * 109.51954 * 261.54768 * 14 12 11 38 38 H 1.08998 * 109.47362 * 188.13540 * 15 14 12 39 39 H 1.09006 * 109.46958 * 68.14640 * 15 14 12 40 40 H 1.09002 * 110.71253 * 35.67153 * 20 18 11 41 41 H 1.09001 * 110.71309 * 158.91471 * 20 18 11 42 42 H 1.09005 * 110.01275 * 218.76028 * 21 20 18 43 43 H 1.08994 * 109.76823 * 97.57165 * 21 20 18 44 44 H 1.07997 * 127.25088 * 359.97438 * 26 25 23 45 45 H 1.08004 * 126.38351 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5165 -4.9275 -0.1188 12 6 1.1941 -5.3323 -1.3453 13 8 1.5144 -4.6394 -2.2878 14 6 0.4506 -6.6109 -1.6129 15 6 -0.2991 -7.0309 -0.3473 16 6 0.6651 -7.0500 0.8317 17 1 0.1622 -7.4364 1.7182 18 6 1.2057 -5.6360 1.1125 19 1 0.5197 -5.0636 1.7370 20 6 2.5421 -5.9523 1.8401 21 6 3.0242 -7.2413 1.1413 22 7 1.8443 -7.8725 0.5294 23 6 1.8444 -9.0162 -0.1837 24 8 0.8035 -9.4484 -0.6395 25 6 3.1083 -9.7475 -0.4066 26 6 3.2663 -10.9564 -1.1246 27 6 4.5877 -11.2436 -1.0635 28 7 5.1781 -10.2605 -0.3505 29 1 6.1259 -10.2131 -0.1499 30 7 4.3045 -9.3942 0.0196 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6240 -2.5568 0.8903 34 1 2.8119 -3.6556 0.9316 35 1 2.9288 -3.5557 -0.8416 36 1 -0.2615 -6.4553 -2.4233 37 1 1.1578 -7.3916 -1.8933 38 1 -0.7206 -8.0262 -0.4881 39 1 -1.1022 -6.3212 -0.1483 40 1 3.2587 -5.1431 1.6991 41 1 2.3696 -6.1353 2.9007 42 1 3.4697 -7.9171 1.8713 43 1 3.7531 -6.9920 0.3703 44 1 2.4950 -11.5294 -1.6177 45 1 5.0785 -12.0990 -1.5037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269131995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:39 Heat of formation + Delta-G solvation = 23.189226 kcal Electronic energy + Delta-G solvation = -29700.017720 eV Core-core repulsion = 25719.599687 eV Total energy + Delta-G solvation = -3980.418033 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.92255 -41.16414 -38.98426 -37.37181 -34.84966 -33.88665 -32.83087 -32.13377 -31.25222 -30.56008 -29.13330 -28.37765 -25.13826 -24.97015 -23.56718 -22.45212 -22.04681 -21.59206 -20.81969 -19.32164 -18.53453 -17.90446 -17.03725 -17.01287 -16.23582 -16.16286 -15.70948 -15.33323 -15.31771 -14.61146 -14.34150 -14.14890 -13.98464 -13.81279 -13.46085 -13.39584 -13.21780 -12.67493 -12.55082 -12.45299 -12.20545 -11.91391 -11.69553 -11.28323 -11.19432 -11.07111 -10.90157 -10.82484 -10.80103 -10.61587 -10.01347 -9.84496 -9.73888 -9.72939 -9.52312 -9.25154 -8.90408 -8.69553 -8.30048 -7.98735 -5.95845 -3.98161 1.34051 1.84040 2.47749 2.88352 3.23268 3.27439 3.35562 3.41190 3.43333 3.54886 4.05250 4.36596 4.46425 4.50615 4.52568 4.83709 4.87191 4.91584 5.02912 5.18954 5.23156 5.31856 5.40434 5.43866 5.51059 5.62058 5.71831 5.76400 5.81642 5.93554 5.99528 6.04073 6.09616 6.17179 6.27317 6.37960 6.60465 6.63442 6.91237 6.96483 7.34816 7.51518 7.68626 7.82791 8.05717 8.06209 8.13275 8.43197 8.80920 9.08687 9.65019 11.15745 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.003087 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.256013 B = 9067.510485 C = 9511.474438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.016 3.984 10 C 0.109 3.891 11 N -0.592 5.592 12 C 0.514 3.486 13 O -0.546 6.546 14 C -0.126 4.126 15 C -0.132 4.132 16 C 0.132 3.868 17 H 0.094 0.906 18 C 0.137 3.863 19 H 0.108 0.892 20 C -0.151 4.151 21 C 0.114 3.886 22 N -0.599 5.599 23 C 0.619 3.381 24 O -0.528 6.528 25 C -0.010 4.010 26 C -0.179 4.179 27 C -0.017 4.017 28 N -0.385 5.385 29 H 0.446 0.554 30 N -0.253 5.253 31 H 0.260 0.740 32 H 0.023 0.977 33 H 0.014 0.986 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.163 0.837 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.319 -25.098 4.496 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.022 4.022 10 C -0.012 4.012 11 N -0.324 5.324 12 C 0.301 3.699 13 O -0.424 6.424 14 C -0.166 4.166 15 C -0.170 4.170 16 C 0.029 3.971 17 H 0.112 0.888 18 C 0.032 3.968 19 H 0.126 0.874 20 C -0.190 4.190 21 C -0.009 4.009 22 N -0.333 5.333 23 C 0.406 3.594 24 O -0.403 6.403 25 C -0.170 4.170 26 C -0.207 4.207 27 C -0.161 4.161 28 N -0.099 5.099 29 H 0.291 0.709 30 N -0.090 5.090 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.181 0.819 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 8.266 -24.130 4.300 25.867 hybrid contribution 0.689 0.303 -0.293 0.808 sum 8.955 -23.827 4.008 25.767 Atomic orbital electron populations 1.69975 1.06062 1.26529 1.50723 1.24990 0.94829 0.99199 0.95300 0.86582 0.79742 0.83449 0.78134 1.20663 1.21283 1.19882 1.21094 0.92940 0.90804 1.50770 0.92669 1.19328 0.94370 0.90959 0.97546 1.21930 0.96070 0.82259 1.00904 1.47250 1.56836 1.23716 1.04577 1.19946 0.80018 0.87296 0.82608 1.90736 1.54519 1.55631 1.41531 1.21548 1.00208 0.95508 0.99344 1.21739 0.97801 1.04456 0.93015 1.21752 0.86861 0.89295 0.99157 0.88819 1.21972 0.96541 0.91260 0.87044 0.87445 1.23301 0.98284 0.97592 0.99809 1.22064 0.87695 0.93703 0.97390 1.48219 1.09985 1.22785 1.52289 1.16430 0.86281 0.79008 0.77710 1.90768 1.31513 1.67242 1.50768 1.21921 0.91918 0.98120 1.05086 1.21806 0.96209 0.97853 1.04847 1.22958 0.94193 0.97051 1.01863 1.43436 1.10778 1.16486 1.39173 0.70947 1.73695 0.98819 1.15876 1.20574 0.93045 0.95836 0.96801 0.91716 0.91055 0.88599 0.89418 0.88239 0.90171 0.88378 0.89516 0.90777 0.90859 0.81915 0.79818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.29 55.43 0.74 -26.72 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.42 5.20 -27.88 -0.15 0.28 16 10 C 0.11 2.31 4.73 -4.04 -0.02 2.29 16 11 N -0.59 -10.67 2.52 -165.50 -0.42 -11.09 16 12 C 0.51 10.24 7.34 -11.91 -0.09 10.15 16 13 O -0.55 -13.52 16.01 5.55 0.09 -13.43 16 14 C -0.13 -2.04 5.59 -28.08 -0.16 -2.20 16 15 C -0.13 -1.78 4.95 -27.09 -0.13 -1.91 16 16 C 0.13 1.62 3.27 -67.55 -0.22 1.40 16 17 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 18 C 0.14 1.85 3.66 -66.73 -0.24 1.61 16 19 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 20 C -0.15 -1.66 6.34 -24.74 -0.16 -1.81 16 21 C 0.11 1.28 5.52 -2.99 -0.02 1.26 16 22 N -0.60 -7.50 2.82 -165.44 -0.47 -7.97 16 23 C 0.62 8.40 6.35 -12.39 -0.08 8.32 16 24 O -0.53 -8.10 14.18 5.30 0.08 -8.02 16 25 C -0.01 -0.11 6.98 -82.77 -0.58 -0.69 16 26 C -0.18 -1.68 10.81 -39.37 -0.43 -2.11 16 27 C -0.02 -0.10 12.02 -17.17 -0.21 -0.31 16 28 N -0.38 -2.51 6.83 30.47 0.21 -2.31 16 29 H 0.45 1.23 8.96 -190.44 -1.71 -0.48 16 30 N -0.25 -2.59 9.77 33.42 0.33 -2.26 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.02 0.71 7.86 -51.93 -0.41 0.30 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 1.20 5.96 -51.93 -0.31 0.89 16 35 H 0.07 1.66 7.32 -51.93 -0.38 1.28 16 36 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.09 1.45 6.12 -51.93 -0.32 1.13 16 38 H 0.10 1.35 6.27 -51.93 -0.33 1.02 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.10 1.17 5.92 -51.93 -0.31 0.86 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.73 7.76 -51.93 -0.40 0.33 16 43 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 44 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.18 0.36 8.06 -52.48 -0.42 -0.06 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -37.90 358.50 -9.43 -47.33 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.48 Total: -0.66 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -2.88 Total: 2.68 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.39 Total: -50.34 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: 0.16 Total: -21.45 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -37.90 -9.43 -47.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269131995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.518 kcal (2) G-P(sol) polarization free energy of solvation -37.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds