Wall clock time and date at job start Tue Mar 31 2020 16:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00148 * 2 1 4 4 H 1.48498 * 109.46999 * 269.99898 * 3 2 1 5 5 H 1.48496 * 109.47166 * 30.00110 * 3 2 1 6 6 H 1.48503 * 109.46920 * 150.00168 * 3 2 1 7 7 C 1.37878 * 119.99801 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00104 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00040 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47096 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46996 * 184.95651 * 10 9 7 12 12 C 1.33117 * 117.26710 * 84.59317 * 11 10 9 13 13 O 1.21286 * 118.57388 * 359.86418 * 12 11 10 14 14 C 1.50309 * 122.85345 * 179.84997 * 12 11 10 15 15 C 1.52978 * 109.19011 * 21.46256 * 14 12 11 16 16 C 1.52317 * 109.48210 * 308.14315 * 15 14 12 17 17 H 1.08999 * 109.98963 * 185.21107 * 16 15 14 18 18 C 1.45422 * 117.26762 * 264.60731 * 11 10 9 19 19 H 1.09005 * 111.32781 * 64.70031 * 18 11 10 20 20 C 1.55412 * 108.16720 * 300.83604 * 18 11 10 21 21 C 1.54348 * 103.09183 * 277.06637 * 20 18 11 22 22 N 1.46915 * 110.84728 * 306.86364 * 16 15 14 23 23 C 1.34773 * 125.73315 * 323.10071 * 22 16 15 24 24 O 1.21572 * 120.00117 * 0.02562 * 23 22 16 25 25 C 1.47716 * 120.00078 * 180.27715 * 23 22 16 26 26 C 1.41494 * 126.52015 * 179.72596 * 25 23 22 27 27 C 1.35368 * 105.50245 * 179.97438 * 26 25 23 28 28 N 1.35030 * 107.23047 * 359.97438 * 27 26 25 29 29 H 0.97000 * 124.88490 * 179.97438 * 28 27 26 30 30 N 1.28472 * 110.22640 * 359.72697 * 28 27 26 31 31 H 0.97001 * 119.99771 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46827 * 59.99680 * 9 7 2 33 33 H 1.08996 * 109.46953 * 299.99579 * 9 7 2 34 34 H 1.09002 * 109.46866 * 64.95763 * 10 9 7 35 35 H 1.08992 * 109.47401 * 304.96007 * 10 9 7 36 36 H 1.09003 * 109.51740 * 141.37967 * 14 12 11 37 37 H 1.09004 * 109.51954 * 261.54768 * 14 12 11 38 38 H 1.08998 * 109.47362 * 188.13540 * 15 14 12 39 39 H 1.09006 * 109.46958 * 68.14640 * 15 14 12 40 40 H 1.09002 * 110.71253 * 35.67153 * 20 18 11 41 41 H 1.09001 * 110.71309 * 158.91471 * 20 18 11 42 42 H 1.09005 * 110.01275 * 218.76028 * 21 20 18 43 43 H 1.08994 * 109.76823 * 97.57165 * 21 20 18 44 44 H 1.07997 * 127.25088 * 359.97438 * 26 25 23 45 45 H 1.08004 * 126.38351 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5165 -4.9275 -0.1188 12 6 1.1941 -5.3323 -1.3453 13 8 1.5144 -4.6394 -2.2878 14 6 0.4506 -6.6109 -1.6129 15 6 -0.2991 -7.0309 -0.3473 16 6 0.6651 -7.0500 0.8317 17 1 0.1622 -7.4364 1.7182 18 6 1.2057 -5.6360 1.1125 19 1 0.5197 -5.0636 1.7370 20 6 2.5421 -5.9523 1.8401 21 6 3.0242 -7.2413 1.1413 22 7 1.8443 -7.8725 0.5294 23 6 1.8444 -9.0162 -0.1837 24 8 0.8035 -9.4484 -0.6395 25 6 3.1083 -9.7475 -0.4066 26 6 3.2663 -10.9564 -1.1246 27 6 4.5877 -11.2436 -1.0635 28 7 5.1781 -10.2605 -0.3505 29 1 6.1259 -10.2131 -0.1499 30 7 4.3045 -9.3942 0.0196 31 1 -0.4850 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8896 33 1 0.6240 -2.5568 0.8903 34 1 2.8119 -3.6556 0.9316 35 1 2.9288 -3.5557 -0.8416 36 1 -0.2615 -6.4553 -2.4233 37 1 1.1578 -7.3916 -1.8933 38 1 -0.7206 -8.0262 -0.4881 39 1 -1.1022 -6.3212 -0.1483 40 1 3.2587 -5.1431 1.6991 41 1 2.3696 -6.1353 2.9007 42 1 3.4697 -7.9171 1.8713 43 1 3.7531 -6.9920 0.3703 44 1 2.4950 -11.5294 -1.6177 45 1 5.0785 -12.0990 -1.5037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269131995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:38 Heat of formation + Delta-G solvation = -3.865978 kcal Electronic energy + Delta-G solvation = -29701.190922 eV Core-core repulsion = 25719.599687 eV Total energy + Delta-G solvation = -3981.591235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.56705 -42.37474 -40.28336 -38.61096 -36.48343 -35.20280 -34.71886 -32.95952 -32.21956 -31.58482 -30.78490 -29.52066 -26.97312 -26.04327 -24.75888 -23.82424 -22.99402 -22.57520 -22.25241 -20.27187 -19.20684 -19.08792 -18.78728 -18.06563 -17.77806 -17.42459 -17.00136 -16.65613 -16.41286 -16.30508 -15.74908 -15.24846 -14.92401 -14.73435 -14.60968 -14.55139 -14.32912 -14.27457 -14.04177 -13.82746 -13.63369 -13.46761 -12.93655 -12.87201 -12.69203 -12.46955 -12.31605 -12.13287 -11.99524 -11.83273 -11.79510 -11.63170 -11.38483 -11.09446 -10.57430 -10.51585 -10.42824 -10.13386 -9.67211 -9.61559 -8.20419 -6.31961 0.54418 1.25546 1.39221 1.42246 1.52473 1.65134 1.75243 2.06702 2.22661 2.35797 2.42696 3.13236 3.14097 3.46005 3.49163 3.58280 3.78222 3.96640 4.03552 4.08964 4.21984 4.25608 4.32825 4.39440 4.54680 4.69318 4.70676 4.77250 4.78530 4.79696 4.83399 4.87004 4.96269 5.03003 5.06631 5.15592 5.30147 5.31084 5.44068 5.49869 5.64678 5.85468 6.18575 6.20380 6.40826 6.58603 6.83528 6.83743 7.12057 7.23049 7.36940 8.91855 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.003087 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.256013 B = 9067.510485 C = 9511.474438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.280 1.280 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.028 3.972 10 C 0.127 3.873 11 N -0.584 5.584 12 C 0.505 3.495 13 O -0.606 6.606 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.135 3.865 17 H 0.127 0.873 18 C 0.124 3.876 19 H 0.118 0.882 20 C -0.140 4.140 21 C 0.120 3.880 22 N -0.601 5.601 23 C 0.612 3.388 24 O -0.556 6.556 25 C -0.043 4.043 26 C -0.209 4.209 27 C 0.012 3.988 28 N -0.369 5.369 29 H 0.463 0.537 30 N -0.269 5.269 31 H 0.263 0.737 32 H -0.028 1.028 33 H 0.003 0.997 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.163 0.837 45 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.394 -26.416 6.490 29.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.578 4.578 8 H 0.082 0.918 9 C -0.010 4.010 10 C 0.004 3.996 11 N -0.314 5.314 12 C 0.294 3.706 13 O -0.489 6.489 14 C -0.155 4.155 15 C -0.164 4.164 16 C 0.032 3.968 17 H 0.145 0.855 18 C 0.020 3.980 19 H 0.136 0.864 20 C -0.178 4.178 21 C -0.002 4.002 22 N -0.334 5.334 23 C 0.401 3.599 24 O -0.433 6.433 25 C -0.202 4.202 26 C -0.237 4.237 27 C -0.132 4.132 28 N -0.086 5.086 29 H 0.311 0.689 30 N -0.107 5.107 31 H 0.072 0.928 32 H -0.010 1.010 33 H 0.021 0.979 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.180 0.820 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 10.369 -25.474 6.359 28.229 hybrid contribution 0.078 0.641 -0.945 1.144 sum 10.447 -24.833 5.414 27.480 Atomic orbital electron populations 1.70117 1.07924 1.27745 1.51543 1.25994 0.95769 1.03468 0.94605 0.85411 0.78966 0.78242 0.78197 1.20627 1.20440 1.17926 1.21549 0.93606 0.91965 1.50716 0.91829 1.19129 0.94500 0.92952 0.94395 1.21511 0.94571 0.81998 1.01472 1.47262 1.55584 1.22728 1.05804 1.20639 0.79490 0.87951 0.82485 1.90697 1.56956 1.57668 1.43547 1.21455 0.99863 0.93240 1.00956 1.21708 0.97945 1.04556 0.92141 1.21844 0.86740 0.88564 0.99670 0.85522 1.22388 0.98757 0.91667 0.85195 0.86402 1.23304 0.96039 0.96992 1.01488 1.22059 0.86935 0.94081 0.97125 1.48284 1.10351 1.22571 1.52211 1.16774 0.86783 0.79138 0.77253 1.90733 1.32626 1.68084 1.51880 1.21865 0.91828 0.99342 1.07164 1.22038 0.98016 0.97734 1.05876 1.23554 0.92976 0.97114 0.99579 1.43571 1.11336 1.15708 1.37994 0.68859 1.73604 0.98781 1.16997 1.21338 0.92820 1.00999 0.97864 0.88265 0.93638 0.88826 0.89703 0.87838 0.89686 0.89119 0.85816 0.88889 0.92742 0.81953 0.75263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.59 13.29 21.45 0.28 -58.31 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 3 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.55 5.20 29.85 0.16 1.71 16 10 C 0.13 5.47 4.73 86.38 0.41 5.88 16 11 N -0.58 -21.41 2.52 -796.84 -2.01 -23.42 16 12 C 0.50 21.08 7.34 87.79 0.64 21.73 16 13 O -0.61 -32.01 16.01 -3.05 -0.05 -32.06 16 14 C -0.12 -3.87 5.59 29.72 0.17 -3.70 16 15 C -0.13 -3.35 4.95 30.36 0.15 -3.20 16 16 C 0.13 3.09 3.27 45.01 0.15 3.23 16 17 H 0.13 2.17 8.14 -2.39 -0.02 2.16 16 18 C 0.12 3.16 3.66 46.35 0.17 3.33 16 19 H 0.12 2.85 8.14 -2.38 -0.02 2.83 16 20 C -0.14 -2.69 6.34 31.88 0.20 -2.49 16 21 C 0.12 2.48 5.52 86.71 0.48 2.96 16 22 N -0.60 -14.37 2.82 -795.60 -2.24 -16.61 16 23 C 0.61 16.44 6.35 86.75 0.55 16.99 16 24 O -0.56 -17.15 14.18 -3.94 -0.06 -17.21 16 25 C -0.04 -0.98 6.98 42.46 0.30 -0.68 16 26 C -0.21 -3.68 10.81 22.41 0.24 -3.44 16 27 C 0.01 0.11 12.02 83.54 1.00 1.12 16 28 N -0.37 -3.86 6.83 -57.51 -0.39 -4.25 16 29 H 0.46 1.13 8.96 -219.99 -1.97 -0.84 16 30 N -0.27 -5.10 9.77 -48.18 -0.47 -5.57 16 31 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 32 H -0.03 -1.85 7.86 -2.39 -0.02 -1.87 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.10 3.59 5.96 -2.39 -0.01 3.58 16 35 H 0.05 2.20 7.32 -2.39 -0.02 2.19 16 36 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.08 2.92 6.12 -2.38 -0.01 2.91 16 38 H 0.10 2.75 6.27 -2.39 -0.01 2.74 16 39 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.09 1.93 5.92 -2.39 -0.01 1.92 16 41 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.59 7.76 -2.38 -0.02 1.57 16 43 H 0.05 1.34 7.69 -2.39 -0.02 1.32 16 44 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 45 H 0.23 -0.19 8.06 -2.91 -0.02 -0.21 16 Total: -1.00 -87.61 358.50 1.47 -86.14 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -0.94 Total: 11.45 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.31 Total: 12.48 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -4.83 Total: -108.16 kcal Atomic # 8 Polarization: -49.17 SS G_CDS: -0.10 Total: -49.27 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -87.61 1.47 -86.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269131995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.274 kcal (2) G-P(sol) polarization free energy of solvation -87.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds