Wall clock time and date at job start Tue Mar 31 2020 17:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38355 * 120.35204 * 2 1 4 4 N 1.31928 * 121.07874 * 180.02562 * 3 2 1 5 5 C 1.31694 * 121.87897 * 359.64747 * 4 3 2 6 6 C 1.39517 * 120.56681 * 0.64205 * 5 4 3 7 7 C 1.47845 * 120.55676 * 179.67963 * 6 5 4 8 8 O 1.21554 * 119.99393 * 179.72166 * 7 6 5 9 9 N 1.34772 * 120.00126 * 359.71678 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47298 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78705 * 75.80823 * 11 10 9 13 13 C 1.53506 * 113.47762 * 206.61781 * 11 10 9 14 14 C 1.53518 * 83.57441 * 140.79307 * 13 11 10 15 15 N 1.47475 * 113.47524 * 305.00169 * 11 10 9 16 16 C 1.46906 * 111.00135 * 106.52642 * 15 11 10 17 17 C 1.50703 * 109.47109 * 187.49657 * 16 15 11 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46988 * 60.00440 * 24 22 20 26 26 H 1.48496 * 109.47065 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47452 * 300.00298 * 24 22 20 28 28 C 1.38353 * 120.34546 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46622 * 269.98119 * 1 2 3 30 30 H 1.08998 * 109.46752 * 29.97749 * 1 2 3 31 31 H 1.08994 * 109.47112 * 149.97573 * 1 2 3 32 32 H 1.08000 * 119.45823 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.71433 * 180.31221 * 5 4 3 34 34 H 0.96998 * 120.00185 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.47312 * 59.99974 * 10 9 7 36 36 H 1.09003 * 109.47066 * 300.00400 * 10 9 7 37 37 H 1.08996 * 114.17352 * 27.14665 * 13 11 10 38 38 H 1.09000 * 114.34458 * 254.44937 * 13 11 10 39 39 H 1.09001 * 113.47541 * 219.21361 * 14 13 11 40 40 H 1.08993 * 113.53310 * 88.75610 * 14 13 11 41 41 H 1.08992 * 109.47459 * 307.49575 * 16 15 11 42 42 H 1.09004 * 109.47040 * 67.49726 * 16 15 11 43 43 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 44 44 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.85845 * 359.95445 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5253 1.2106 -0.0005 5 6 4.2350 0.1013 0.0059 6 6 3.6054 -1.1437 0.0000 7 6 4.4023 -2.3890 0.0000 8 8 3.8431 -3.4683 -0.0001 9 7 5.7486 -2.3275 0.0000 10 6 6.5383 -3.5614 -0.0006 11 6 8.0282 -3.2135 0.0001 12 1 8.3830 -2.8782 0.9748 13 6 8.9101 -4.2998 -0.6311 14 6 9.6735 -3.1006 -1.2106 15 7 8.4242 -2.3236 -1.1072 16 6 8.6891 -0.9632 -0.6203 17 6 8.9096 -0.0437 -1.7938 18 8 8.8513 -0.4788 -2.9245 19 7 9.1716 1.2621 -1.5869 20 6 9.3717 2.0986 -2.6545 21 1 9.3197 1.7112 -3.6613 22 6 9.6412 3.4449 -2.4410 23 7 9.7039 3.9164 -1.2160 24 14 9.9145 4.5846 -3.8956 25 1 8.7017 4.5930 -4.7526 26 1 10.1817 5.9600 -3.4035 27 1 11.0766 4.1071 -4.6872 28 6 2.2060 -1.1940 -0.0005 29 1 -0.3632 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6630 2.1274 0.0004 33 1 5.3136 0.1558 0.0103 34 1 6.1948 -1.4662 0.0003 35 1 6.3013 -4.1441 -0.8908 36 1 6.3013 -4.1448 0.8891 37 1 8.4019 -4.9088 -1.3787 38 1 9.4817 -4.8880 0.0869 39 1 10.0064 -3.2527 -2.2373 40 1 10.4677 -2.7346 -0.5600 41 1 7.8362 -0.6126 -0.0394 42 1 9.5793 -0.9693 0.0088 43 1 9.2179 1.6100 -0.6826 44 1 9.8924 4.8562 -1.0671 45 1 1.6858 -2.1404 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269214509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:14 Heat of formation + Delta-G solvation = 3.720049 kcal Electronic energy + Delta-G solvation = -28174.143474 eV Core-core repulsion = 24192.881194 eV Total energy + Delta-G solvation = -3981.262280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.87259 -40.31811 -38.91715 -37.76691 -34.76881 -33.92190 -33.76504 -32.36029 -31.39416 -30.68945 -28.56338 -27.43810 -25.86159 -24.71398 -23.78857 -22.93564 -22.77490 -20.56391 -19.72964 -19.30990 -17.97103 -17.91798 -17.05938 -16.76893 -16.17071 -15.89674 -15.51843 -15.25950 -15.09394 -14.63302 -14.43783 -14.35911 -14.04798 -13.79018 -13.55678 -13.46445 -13.22336 -12.96220 -12.83835 -12.72729 -12.45701 -12.16062 -11.99822 -11.62572 -11.57100 -11.36674 -11.06612 -10.91169 -10.64506 -10.43938 -10.24735 -10.20920 -9.95882 -9.50858 -9.49389 -9.24354 -9.03852 -8.86923 -8.25051 -7.96749 -6.41710 -3.82473 0.50138 1.03307 2.77242 2.99090 3.20352 3.26327 3.30631 3.70901 3.84386 3.88881 4.14888 4.22217 4.37735 4.48652 4.60732 4.66454 4.71220 4.75473 4.89104 4.94663 4.96460 5.15715 5.24684 5.28592 5.29444 5.35518 5.39771 5.45770 5.57753 5.61052 5.66896 5.72409 5.80555 5.85556 5.92050 5.97334 6.13265 6.19693 6.30355 6.40543 6.48919 7.10630 7.37796 7.55142 7.74443 8.04861 8.08350 8.60819 9.18059 9.52911 10.04930 10.75831 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007926 B = 0.003988 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.900734 B = 7020.165419 C =10089.039047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.150 4.150 3 C 0.121 3.879 4 N -0.476 5.476 5 C 0.136 3.864 6 C -0.184 4.184 7 C 0.565 3.435 8 O -0.542 6.542 9 N -0.714 5.714 10 C 0.142 3.858 11 C 0.002 3.998 12 H 0.084 0.916 13 C -0.132 4.132 14 C 0.006 3.994 15 N -0.433 5.433 16 C 0.007 3.993 17 C 0.443 3.557 18 O -0.573 6.573 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.102 0.898 22 C 0.025 3.975 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.020 4.020 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.157 0.843 34 H 0.401 0.599 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.391 0.609 44 H 0.272 0.728 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.063 -10.702 8.811 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.152 4.152 3 C -0.036 4.036 4 N -0.183 5.183 5 C -0.023 4.023 6 C -0.189 4.189 7 C 0.352 3.648 8 O -0.420 6.420 9 N -0.366 5.366 10 C 0.018 3.982 11 C -0.108 4.108 12 H 0.102 0.898 13 C -0.171 4.171 14 C -0.123 4.123 15 N -0.156 5.156 16 C -0.125 4.125 17 C 0.228 3.772 18 O -0.456 6.456 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.177 4.177 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.199 1.199 28 C -0.046 4.046 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.177 0.823 33 H 0.174 0.826 34 H 0.238 0.762 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.224 0.776 44 H 0.082 0.918 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.428 -10.628 7.517 17.322 hybrid contribution 0.642 0.720 0.627 1.151 sum -10.785 -9.908 8.144 16.758 Atomic orbital electron populations 1.20719 0.89643 1.03428 1.02757 1.20944 0.97978 0.93788 1.02497 1.22979 0.89987 0.97721 0.92886 1.67759 1.07917 1.30867 1.11721 1.23017 1.00400 0.86789 0.92069 1.21002 0.95208 0.94768 1.07924 1.17997 0.82108 0.88360 0.76357 1.90752 1.71188 1.29638 1.50442 1.45858 1.05677 1.10635 1.74389 1.21368 0.88097 0.86231 1.02527 1.23804 0.95009 0.96102 0.95932 0.89836 1.23152 0.97760 0.95925 1.00233 1.23735 0.92687 0.92990 1.02903 1.68877 1.19273 0.99159 1.28282 1.22578 1.00821 0.91863 0.97274 1.19569 0.84893 0.83059 0.89706 1.90543 1.55753 1.75649 1.23619 1.41855 1.62055 1.06444 1.09692 1.19627 1.45219 0.89165 0.88906 0.88040 1.25233 0.97298 0.97536 0.97655 1.69594 1.49152 1.15750 1.19687 0.85942 0.79082 0.78621 0.80735 1.19872 1.20950 1.19947 1.21582 0.92337 0.98921 0.91773 0.90746 0.90896 0.91084 0.82250 0.82589 0.76177 0.90465 0.90983 0.88525 0.90368 0.89091 0.91328 0.90460 0.91968 0.77587 0.91812 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.03 36.01 0.36 -0.36 16 2 C -0.15 -1.52 5.89 -104.54 -0.62 -2.14 16 3 C 0.12 1.38 10.85 -17.47 -0.19 1.19 16 4 N -0.48 -6.89 10.35 -12.91 -0.13 -7.02 16 5 C 0.14 1.90 10.71 -17.13 -0.18 1.72 16 6 C -0.18 -2.48 5.89 -104.82 -0.62 -3.10 16 7 C 0.57 8.22 7.78 -12.33 -0.10 8.13 16 8 O -0.54 -9.08 16.42 5.32 0.09 -8.99 16 9 N -0.71 -9.40 5.42 -61.25 -0.33 -9.73 16 10 C 0.14 1.68 5.81 -4.04 -0.02 1.66 16 11 C 0.00 0.02 3.25 -71.44 -0.23 -0.21 16 12 H 0.08 0.81 7.91 -51.92 -0.41 0.40 16 13 C -0.13 -1.32 8.00 -26.20 -0.21 -1.53 16 14 C 0.01 0.08 7.69 -7.55 -0.06 0.02 16 15 N -0.43 -6.61 5.39 -237.96 -1.28 -7.89 16 16 C 0.01 0.11 5.04 -4.97 -0.03 0.09 16 17 C 0.44 10.17 7.83 -10.98 -0.09 10.09 16 18 O -0.57 -15.48 16.01 5.54 0.09 -15.39 16 19 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 23 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C -0.02 -0.23 9.39 -38.87 -0.37 -0.60 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 32 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.16 2.07 6.42 -52.48 -0.34 1.73 16 34 H 0.40 5.18 4.27 -40.82 -0.17 5.00 16 35 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.97 7.94 -51.93 -0.41 0.55 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.07 0.83 7.44 -51.93 -0.39 0.45 16 41 H 0.08 1.10 6.25 -51.93 -0.32 0.78 16 42 H 0.06 0.91 7.35 -51.93 -0.38 0.53 16 43 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.15 1.58 7.74 -52.49 -0.41 1.17 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -34.70 379.51 -8.82 -43.52 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -6.03 Total: 14.20 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: -2.58 Total: 7.07 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -1.08 Total: -62.21 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.18 Total: -24.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.70 -8.82 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269214509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.237 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds