Wall clock time and date at job start Tue Mar 31 2020 17:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38355 * 120.35204 * 2 1 4 4 N 1.31928 * 121.07874 * 180.02562 * 3 2 1 5 5 C 1.31694 * 121.87897 * 359.64747 * 4 3 2 6 6 C 1.39517 * 120.56681 * 0.64205 * 5 4 3 7 7 C 1.47845 * 120.55676 * 179.67963 * 6 5 4 8 8 O 1.21554 * 119.99393 * 179.72166 * 7 6 5 9 9 N 1.34772 * 120.00126 * 359.71678 * 7 6 5 10 10 C 1.46497 * 119.99945 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47298 * 180.02562 * 10 9 7 12 12 H 1.09007 * 112.78705 * 75.80823 * 11 10 9 13 13 C 1.53506 * 113.47762 * 206.61781 * 11 10 9 14 14 C 1.53518 * 83.57441 * 140.79307 * 13 11 10 15 15 N 1.47475 * 113.47524 * 305.00169 * 11 10 9 16 16 C 1.46906 * 111.00135 * 106.52642 * 15 11 10 17 17 C 1.50703 * 109.47109 * 187.49657 * 16 15 11 18 18 O 1.21296 * 119.99996 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99978 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99848 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00405 * 359.97438 * 20 19 17 22 22 C 1.38953 * 119.99358 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00464 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99431 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46988 * 60.00440 * 24 22 20 26 26 H 1.48496 * 109.47065 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47452 * 300.00298 * 24 22 20 28 28 C 1.38353 * 120.34546 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46622 * 269.98119 * 1 2 3 30 30 H 1.08998 * 109.46752 * 29.97749 * 1 2 3 31 31 H 1.08994 * 109.47112 * 149.97573 * 1 2 3 32 32 H 1.08000 * 119.45823 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.71433 * 180.31221 * 5 4 3 34 34 H 0.96998 * 120.00185 * 0.02562 * 9 7 6 35 35 H 1.09004 * 109.47312 * 59.99974 * 10 9 7 36 36 H 1.09003 * 109.47066 * 300.00400 * 10 9 7 37 37 H 1.08996 * 114.17352 * 27.14665 * 13 11 10 38 38 H 1.09000 * 114.34458 * 254.44937 * 13 11 10 39 39 H 1.09001 * 113.47541 * 219.21361 * 14 13 11 40 40 H 1.08993 * 113.53310 * 88.75610 * 14 13 11 41 41 H 1.08992 * 109.47459 * 307.49575 * 16 15 11 42 42 H 1.09004 * 109.47040 * 67.49726 * 16 15 11 43 43 H 0.97002 * 119.99767 * 359.97438 * 19 17 16 44 44 H 0.96997 * 119.99770 * 179.97438 * 23 22 20 45 45 H 1.07998 * 120.85845 * 359.95445 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2061 1.1939 0.0000 4 7 3.5253 1.2106 -0.0005 5 6 4.2350 0.1013 0.0059 6 6 3.6054 -1.1437 0.0000 7 6 4.4023 -2.3890 0.0000 8 8 3.8431 -3.4683 -0.0001 9 7 5.7486 -2.3275 0.0000 10 6 6.5383 -3.5614 -0.0006 11 6 8.0282 -3.2135 0.0001 12 1 8.3830 -2.8782 0.9748 13 6 8.9101 -4.2998 -0.6311 14 6 9.6735 -3.1006 -1.2106 15 7 8.4242 -2.3236 -1.1072 16 6 8.6891 -0.9632 -0.6203 17 6 8.9096 -0.0437 -1.7938 18 8 8.8513 -0.4788 -2.9245 19 7 9.1716 1.2621 -1.5869 20 6 9.3717 2.0986 -2.6545 21 1 9.3197 1.7112 -3.6613 22 6 9.6412 3.4449 -2.4410 23 7 9.7039 3.9164 -1.2160 24 14 9.9145 4.5846 -3.8956 25 1 8.7017 4.5930 -4.7526 26 1 10.1817 5.9600 -3.4035 27 1 11.0766 4.1071 -4.6872 28 6 2.2060 -1.1940 -0.0005 29 1 -0.3632 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6630 2.1274 0.0004 33 1 5.3136 0.1558 0.0103 34 1 6.1948 -1.4662 0.0003 35 1 6.3013 -4.1441 -0.8908 36 1 6.3013 -4.1448 0.8891 37 1 8.4019 -4.9088 -1.3787 38 1 9.4817 -4.8880 0.0869 39 1 10.0064 -3.2527 -2.2373 40 1 10.4677 -2.7346 -0.5600 41 1 7.8362 -0.6126 -0.0394 42 1 9.5793 -0.9693 0.0088 43 1 9.2179 1.6100 -0.6826 44 1 9.8924 4.8562 -1.0671 45 1 1.6858 -2.1404 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269214509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:13 Heat of formation + Delta-G solvation = -23.574436 kcal Electronic energy + Delta-G solvation = -28175.327051 eV Core-core repulsion = 24192.881194 eV Total energy + Delta-G solvation = -3982.445858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90186 -41.37129 -40.05677 -39.53434 -35.97370 -35.79589 -34.62596 -33.38370 -33.27551 -32.03388 -29.53954 -28.19766 -27.54455 -25.68386 -25.37219 -23.88569 -23.72550 -21.60838 -21.08792 -20.67056 -19.91161 -18.97306 -18.06169 -17.81291 -17.57183 -17.17628 -16.71350 -16.49607 -16.31578 -16.29275 -15.67999 -15.60035 -15.25147 -15.14984 -14.79176 -14.38360 -14.23077 -14.17679 -13.95013 -13.62030 -13.53213 -13.50035 -13.10223 -12.93003 -12.83449 -12.63787 -12.44907 -12.36357 -12.14823 -11.96233 -11.72800 -11.49208 -11.29914 -10.94243 -10.51311 -10.37912 -10.23866 -9.99953 -9.97655 -9.73137 -8.45925 -5.94097 -0.47055 0.10531 1.38487 1.40617 1.50931 1.70361 1.96522 2.06497 2.28357 2.73203 2.78717 3.18605 3.21434 3.34127 3.53962 3.60811 3.72468 3.76301 3.79064 3.86934 4.01839 4.12374 4.15968 4.25248 4.32882 4.40061 4.41820 4.50839 4.63932 4.73045 4.82386 4.83600 4.86235 4.91179 5.01052 5.13840 5.18970 5.19718 5.26620 5.40760 5.43517 5.55542 5.92445 6.10332 6.29867 6.61617 6.78697 6.98910 7.14301 7.57547 8.14353 8.71004 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.007926 B = 0.003988 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3531.900734 B = 7020.165419 C =10089.039047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.136 4.136 3 C 0.114 3.886 4 N -0.508 5.508 5 C 0.120 3.880 6 C -0.195 4.195 7 C 0.563 3.437 8 O -0.569 6.569 9 N -0.710 5.710 10 C 0.139 3.861 11 C 0.013 3.987 12 H 0.111 0.889 13 C -0.111 4.111 14 C -0.004 4.004 15 N -0.470 5.470 16 C 0.020 3.980 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.917 5.917 24 Si 0.987 3.013 25 H -0.275 1.275 26 H -0.269 1.269 27 H -0.272 1.272 28 C -0.029 4.029 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.189 0.811 33 H 0.153 0.847 34 H 0.402 0.598 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 -10.864 10.263 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.138 4.138 3 C -0.042 4.042 4 N -0.216 5.216 5 C -0.038 4.038 6 C -0.200 4.200 7 C 0.350 3.650 8 O -0.450 6.450 9 N -0.361 5.361 10 C 0.016 3.984 11 C -0.097 4.097 12 H 0.129 0.871 13 C -0.149 4.149 14 C -0.132 4.132 15 N -0.193 5.193 16 C -0.112 4.112 17 C 0.228 3.772 18 O -0.504 6.504 19 N -0.210 5.210 20 C -0.463 4.463 21 H 0.093 0.907 22 C -0.209 4.209 23 N -0.558 5.558 24 Si 0.811 3.189 25 H -0.200 1.200 26 H -0.193 1.193 27 H -0.197 1.197 28 C -0.055 4.055 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.206 0.794 33 H 0.170 0.830 34 H 0.239 0.761 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.267 -10.794 9.001 18.655 hybrid contribution 0.846 0.737 0.159 1.133 sum -11.422 -10.056 9.161 17.762 Atomic orbital electron populations 1.20828 0.86701 1.04664 1.04141 1.21306 0.99885 0.92574 1.00055 1.23527 0.89214 0.99487 0.92018 1.67735 1.09643 1.31286 1.12946 1.22976 1.00462 0.87099 0.93277 1.20999 0.96016 0.94077 1.08937 1.18188 0.82521 0.88337 0.75906 1.90725 1.71699 1.30518 1.52068 1.45911 1.05472 1.11175 1.73556 1.21491 0.88479 0.85748 1.02676 1.23878 0.94525 0.95278 0.95981 0.87140 1.23093 0.96621 0.94911 1.00297 1.23831 0.92753 0.94607 1.02033 1.68835 1.20787 0.98877 1.30846 1.22452 1.02892 0.91402 0.94408 1.20731 0.82363 0.82996 0.91072 1.90508 1.57144 1.76462 1.26298 1.41911 1.62775 1.07109 1.09210 1.19559 1.47458 0.90489 0.88801 0.90713 1.25944 0.96470 0.98229 1.00233 1.69649 1.48985 1.16293 1.20865 0.85078 0.78750 0.77269 0.77794 1.20043 1.19327 1.19715 1.21827 0.91844 1.00066 0.91801 0.89093 0.89217 0.90330 0.79422 0.82970 0.76086 0.91978 0.89145 0.88836 0.86855 0.91772 0.89896 0.88270 0.89390 0.77019 0.91322 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.03 71.24 0.71 -0.39 16 2 C -0.14 -2.55 5.89 -19.81 -0.12 -2.67 16 3 C 0.11 2.46 10.85 84.71 0.92 3.38 16 4 N -0.51 -14.75 10.35 -194.75 -2.01 -16.77 16 5 C 0.12 3.43 10.71 85.02 0.91 4.34 16 6 C -0.20 -5.32 5.89 -19.99 -0.12 -5.44 16 7 C 0.56 16.47 7.78 86.79 0.68 17.14 16 8 O -0.57 -19.12 16.42 -3.89 -0.06 -19.18 16 9 N -0.71 -18.43 5.42 -465.97 -2.52 -20.96 16 10 C 0.14 3.12 5.81 86.38 0.50 3.62 16 11 C 0.01 0.26 3.25 42.18 0.14 0.39 16 12 H 0.11 1.69 7.91 -2.38 -0.02 1.67 16 13 C -0.11 -1.94 8.00 30.94 0.25 -1.69 16 14 C 0.00 -0.09 7.69 83.57 0.64 0.55 16 15 N -0.47 -13.96 5.39 -906.76 -4.89 -18.85 16 16 C 0.02 0.65 5.04 85.56 0.43 1.08 16 17 C 0.44 20.71 7.83 87.66 0.69 21.40 16 18 O -0.62 -34.74 16.01 -3.08 -0.05 -34.79 16 19 N -0.57 -29.03 5.29 -306.98 -1.62 -30.65 16 20 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 21 H 0.07 4.59 7.16 -2.91 -0.02 4.57 16 22 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 23 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 24 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 C -0.03 -0.67 9.39 22.73 0.21 -0.46 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.68 8.09 -2.39 -0.02 0.66 16 31 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 32 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.15 4.23 6.42 -2.91 -0.02 4.21 16 34 H 0.40 10.27 4.27 -92.71 -0.40 9.87 16 35 H 0.06 1.59 7.88 -2.38 -0.02 1.57 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.71 7.94 -2.39 -0.02 1.69 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 1.84 7.44 -2.39 -0.02 1.82 16 41 H 0.10 2.72 6.25 -2.39 -0.01 2.70 16 42 H 0.09 2.37 7.35 -2.38 -0.02 2.36 16 43 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 44 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 45 H 0.15 3.22 7.74 -2.91 -0.02 3.19 16 Total: -1.00 -78.01 379.51 -1.81 -79.83 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: -0.09 Total: 41.95 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 7.13 Total: 23.07 kcal Atomic # 7 Polarization: -125.53 SS G_CDS: -10.77 Total: -136.30 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -0.11 Total: -53.97 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -78.01 -1.81 -79.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269214509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.251 kcal (2) G-P(sol) polarization free energy of solvation -78.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds