Wall clock time and date at job start Tue Mar 31 2020 16:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86793 * 120.00337 * 2 1 4 4 H 1.48506 * 109.47536 * 239.99993 * 3 2 1 5 5 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47165 * 119.99723 * 3 2 1 7 7 C 1.38805 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00110 * 180.02562 * 7 2 1 9 9 S 1.76197 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00017 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47153 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00445 * 359.97438 * 11 10 9 13 13 N 1.34784 * 120.00064 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99851 * 179.97438 * 13 11 10 15 15 C 1.53009 * 109.46587 * 175.11207 * 14 13 11 16 16 N 1.46895 * 109.54151 * 54.94931 * 15 14 13 17 17 C 1.46898 * 111.00150 * 58.04855 * 16 15 14 18 18 C 1.52998 * 109.47095 * 182.60871 * 17 16 15 19 19 C 1.53003 * 109.47376 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.47192 * 180.02562 * 19 18 17 21 21 C 1.53182 * 109.53852 * 175.12096 * 15 14 13 22 22 C 1.53282 * 109.06155 * 176.85158 * 21 15 14 23 23 O 1.42896 * 109.46235 * 302.44976 * 22 21 15 24 24 C 1.42903 * 114.10163 * 61.15503 * 23 22 21 25 25 C 1.53086 * 109.41682 * 298.84435 * 24 23 22 26 26 H 0.97003 * 120.00036 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47304 * 59.99414 * 10 9 7 28 28 H 1.09007 * 109.47118 * 299.99653 * 10 9 7 29 29 H 0.96998 * 119.99885 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47018 * 55.12041 * 14 13 11 31 31 H 1.08994 * 109.47766 * 295.11516 * 14 13 11 32 32 H 1.00897 * 110.99638 * 182.00604 * 16 15 14 33 33 H 1.09001 * 109.47333 * 302.60771 * 17 16 15 34 34 H 1.09006 * 109.47038 * 62.61497 * 17 16 15 35 35 H 1.09002 * 109.47576 * 300.00556 * 18 17 16 36 36 H 1.09005 * 109.47367 * 60.00142 * 18 17 16 37 37 H 1.09002 * 109.46811 * 300.00379 * 19 18 17 38 38 H 1.08993 * 109.46954 * 60.00167 * 19 18 17 39 39 H 0.96697 * 113.99883 * 180.02562 * 20 19 18 40 40 H 1.08996 * 109.52798 * 296.84725 * 21 15 14 41 41 H 1.09004 * 109.52084 * 57.03916 * 21 15 14 42 42 H 1.09001 * 109.46054 * 182.44562 * 22 21 15 43 43 H 1.09006 * 109.46360 * 62.44974 * 22 21 15 44 44 H 1.08999 * 109.48426 * 178.85871 * 24 23 22 45 45 H 1.09010 * 109.48799 * 58.83159 * 24 23 22 46 46 H 1.09006 * 109.51971 * 297.69986 * 25 24 23 47 47 H 1.08997 * 109.57905 * 177.54536 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9872 -5.3027 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8440 -6.3432 0.0022 14 6 2.3301 -7.7151 0.0024 15 6 3.4974 -8.6968 -0.1200 16 7 4.4724 -8.4363 0.9474 17 6 3.8473 -8.5531 2.2716 18 6 4.8749 -8.2121 3.3525 19 6 4.2240 -8.3344 4.7318 20 8 5.1837 -8.0153 5.7414 21 6 2.9750 -10.1316 0.0022 22 6 4.1397 -11.1073 -0.2003 23 8 4.7421 -10.8717 -1.4745 24 6 5.2889 -9.5604 -1.6279 25 6 4.1722 -8.5232 -1.4841 26 1 -0.4850 0.8401 -0.0004 27 1 3.1237 -3.7310 0.8924 28 1 3.1250 -3.7319 -0.8875 29 1 3.8007 -6.1836 0.0025 30 1 1.6526 -7.8494 -0.8409 31 1 1.7939 -7.9023 0.9327 32 1 5.2685 -9.0511 0.8678 33 1 3.0066 -7.8626 2.3387 34 1 3.4921 -9.5734 2.4169 35 1 5.7157 -8.9026 3.2854 36 1 5.2302 -7.1919 3.2073 37 1 3.3831 -7.6442 4.7992 38 1 3.8691 -9.3547 4.8769 39 1 4.8396 -8.0725 6.6433 40 1 2.5417 -10.2786 0.9915 41 1 2.2154 -10.3088 -0.7592 42 1 3.7675 -12.1310 -0.1579 43 1 4.8803 -10.9570 0.5853 44 1 5.7446 -9.4696 -2.6139 45 1 6.0447 -9.3895 -0.8611 46 1 3.4366 -8.6680 -2.2754 47 1 4.5933 -7.5206 -1.5572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271023131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:26 Heat of formation + Delta-G solvation = -139.261799 kcal Electronic energy + Delta-G solvation = -27042.776960 eV Core-core repulsion = 23158.465722 eV Total energy + Delta-G solvation = -3884.311238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84614 -38.89243 -37.62910 -36.76310 -34.31440 -32.99842 -32.40480 -31.55603 -30.10125 -29.64029 -26.96348 -25.44086 -25.08255 -23.96688 -22.89468 -21.63506 -20.22669 -19.38859 -17.90709 -17.68873 -17.00631 -16.50462 -16.37932 -16.14872 -16.05295 -15.59049 -15.26746 -14.92526 -14.78157 -14.68368 -14.52708 -14.02264 -13.77455 -13.46382 -13.09686 -13.01416 -12.67963 -12.64927 -12.52456 -12.31002 -11.96027 -11.73361 -11.63394 -11.45031 -11.42865 -11.03273 -11.02077 -11.00619 -10.75991 -10.70413 -10.28746 -9.90724 -9.78806 -9.35679 -9.03982 -8.88452 -8.76104 -8.20880 -6.47121 -6.19368 -3.89548 3.06180 3.16085 3.25281 3.28809 3.31823 3.43682 3.48162 3.79658 4.11587 4.23062 4.25320 4.29082 4.41204 4.54695 4.60555 4.72410 4.83801 4.87551 4.97925 5.00326 5.12811 5.15673 5.17915 5.22640 5.25169 5.27594 5.34263 5.38640 5.51335 5.58483 5.61595 5.69291 5.74953 5.82694 5.87125 5.93438 5.94950 6.19566 6.53643 6.73096 6.77243 6.90871 7.29194 7.61735 7.84983 8.37494 8.69366 9.25897 10.88020 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011678 B = 0.002777 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.002283 B =10081.061790 C =11495.202336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.151 4.151 11 C 0.530 3.470 12 O -0.524 6.524 13 N -0.725 5.725 14 C 0.137 3.863 15 C 0.105 3.895 16 N -0.675 5.675 17 C 0.054 3.946 18 C -0.117 4.117 19 C 0.076 3.924 20 O -0.575 6.575 21 C -0.185 4.185 22 C 0.063 3.937 23 O -0.381 6.381 24 C 0.058 3.942 25 C -0.143 4.143 26 H 0.269 0.731 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.405 0.595 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.341 0.659 33 H 0.084 0.916 34 H 0.034 0.966 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.042 0.958 39 H 0.380 0.620 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.097 0.903 45 H 0.054 0.946 46 H 0.081 0.919 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.777 -23.965 3.818 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.316 3.684 12 O -0.399 6.399 13 N -0.381 5.381 14 C 0.012 3.988 15 C 0.014 3.986 16 N -0.307 5.307 17 C -0.075 4.075 18 C -0.155 4.155 19 C -0.002 4.002 20 O -0.380 6.380 21 C -0.225 4.225 22 C -0.014 4.014 23 O -0.300 6.300 24 C -0.019 4.019 25 C -0.181 4.181 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.241 0.759 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.227 0.773 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.115 0.885 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.927 -23.553 3.113 25.749 hybrid contribution 1.850 0.491 0.848 2.093 sum 11.777 -23.063 3.961 26.197 Atomic orbital electron populations 1.70010 1.05950 1.27517 1.46900 1.24986 0.95018 0.98998 0.94560 0.86232 0.79239 0.81259 0.78815 1.19937 1.20840 1.19935 1.22839 0.94894 0.91716 1.58924 0.90990 1.85363 1.05076 0.96292 1.96717 1.23507 1.06408 0.95439 1.04860 1.20310 0.86494 0.86352 0.75236 1.90694 1.15482 1.85678 1.48006 1.45835 1.10406 1.04591 1.77230 1.21242 0.94168 0.81236 1.02134 1.21204 0.92367 0.93011 0.92057 1.60550 1.09360 1.59163 1.01670 1.21962 0.97694 0.99988 0.87847 1.21427 0.98381 1.03930 0.91725 1.22102 0.91172 0.98661 0.88257 1.86464 1.40447 1.92829 1.18291 1.22881 0.99939 0.95840 1.03819 1.22553 0.93742 0.99468 0.85676 1.87965 1.76054 1.31676 1.34283 1.22652 0.94715 0.82096 1.02455 1.22247 0.99240 1.00824 0.95751 0.92167 0.89301 0.89354 0.75921 0.91015 0.91949 0.83908 0.89775 0.94745 0.91641 0.90025 0.93228 0.93946 0.77271 0.90212 0.89802 0.88634 0.93563 0.88468 0.92805 0.90061 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 11 C 0.53 9.88 7.85 -10.98 -0.09 9.79 16 12 O -0.52 -11.88 15.86 5.56 0.09 -11.79 16 13 N -0.73 -9.60 5.12 -60.29 -0.31 -9.90 16 14 C 0.14 1.54 3.99 -4.04 -0.02 1.53 16 15 C 0.11 0.83 0.35 -131.41 -0.05 0.79 16 16 N -0.67 -4.94 5.39 -99.77 -0.54 -5.48 16 17 C 0.05 0.41 4.91 -3.83 -0.02 0.39 16 18 C -0.12 -0.95 5.87 -26.73 -0.16 -1.11 16 19 C 0.08 0.60 7.05 37.16 0.26 0.87 16 20 O -0.57 -5.16 13.66 -35.23 -0.48 -5.65 16 21 C -0.18 -1.29 4.71 -26.49 -0.12 -1.41 16 22 C 0.06 0.41 6.58 37.30 0.25 0.66 16 23 O -0.38 -3.28 10.77 -35.23 -0.38 -3.66 16 24 C 0.06 0.41 6.58 37.20 0.24 0.65 16 25 C -0.14 -1.11 4.96 -26.59 -0.13 -1.24 16 26 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 28 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 29 H 0.41 4.64 7.44 -40.82 -0.30 4.33 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.74 6.61 -51.93 -0.34 0.40 16 32 H 0.34 2.20 5.46 -39.29 -0.21 1.99 16 33 H 0.08 0.81 6.24 -51.93 -0.32 0.48 16 34 H 0.03 0.23 6.43 -51.93 -0.33 -0.11 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.38 1.73 9.12 45.56 0.42 2.15 16 40 H 0.08 0.51 6.37 -51.93 -0.33 0.18 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.27 6.87 -51.93 -0.36 -0.09 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.33 6.77 -51.92 -0.35 -0.02 16 46 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.09 0.70 7.40 -51.93 -0.38 0.32 16 LS Contribution 383.83 15.07 5.78 5.78 Total: -1.00 -35.56 383.83 -8.47 -44.02 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.72 Total: 4.66 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 0.59 Total: -5.03 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.11 Total: -40.99 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.77 Total: -21.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.56 -8.47 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271023131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.238 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds